Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20671 and SM_b20672 overlap by 4 nucleotides SM_b20672 and SM_b20673 overlap by 4 nucleotides
SM_b20671: SM_b20671 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,472,038 to 1,473,006
_b20671
SM_b20672: SM_b20672 - sugar uptake ABC transporter permease, at 1,473,003 to 1,474,325
_b20672
SM_b20673: SM_b20673 - sugar uptake ABC transporter ATP-binding protein, at 1,474,322 to 1,475,902
_b20673
Position (kb)
1473
1474
1475 Strain fitness (log2 ratio)
-1
0
1 at 1472.039 kb on + strand at 1472.303 kb on + strand, within SM_b20671 at 1472.303 kb on + strand, within SM_b20671 at 1472.304 kb on - strand, within SM_b20671 at 1472.327 kb on + strand, within SM_b20671 at 1472.329 kb on + strand, within SM_b20671 at 1472.330 kb on - strand, within SM_b20671 at 1472.378 kb on + strand, within SM_b20671 at 1472.378 kb on + strand, within SM_b20671 at 1472.379 kb on - strand, within SM_b20671 at 1472.379 kb on - strand, within SM_b20671 at 1472.506 kb on + strand, within SM_b20671 at 1472.507 kb on - strand, within SM_b20671 at 1472.517 kb on + strand, within SM_b20671 at 1472.562 kb on - strand, within SM_b20671 at 1472.615 kb on + strand, within SM_b20671 at 1472.616 kb on - strand, within SM_b20671 at 1472.797 kb on + strand, within SM_b20671 at 1473.027 kb on + strand at 1473.128 kb on - strand at 1473.379 kb on + strand, within SM_b20672 at 1473.379 kb on + strand, within SM_b20672 at 1473.421 kb on + strand, within SM_b20672 at 1473.421 kb on + strand, within SM_b20672 at 1473.422 kb on - strand, within SM_b20672 at 1473.422 kb on - strand, within SM_b20672 at 1473.422 kb on - strand, within SM_b20672 at 1473.493 kb on + strand, within SM_b20672 at 1473.499 kb on + strand, within SM_b20672 at 1473.500 kb on - strand, within SM_b20672 at 1473.561 kb on + strand, within SM_b20672 at 1473.561 kb on + strand, within SM_b20672 at 1473.561 kb on + strand, within SM_b20672 at 1473.561 kb on + strand, within SM_b20672 at 1473.562 kb on - strand, within SM_b20672 at 1473.605 kb on + strand, within SM_b20672 at 1473.605 kb on + strand, within SM_b20672 at 1473.636 kb on - strand, within SM_b20672 at 1473.929 kb on + strand, within SM_b20672 at 1473.930 kb on - strand, within SM_b20672 at 1473.978 kb on + strand, within SM_b20672 at 1473.978 kb on + strand, within SM_b20672 at 1473.979 kb on - strand, within SM_b20672 at 1474.033 kb on + strand, within SM_b20672 at 1474.033 kb on + strand, within SM_b20672 at 1474.120 kb on - strand, within SM_b20672 at 1474.177 kb on - strand, within SM_b20672 at 1474.288 kb on + strand at 1474.527 kb on + strand, within SM_b20673 at 1474.527 kb on + strand, within SM_b20673 at 1474.527 kb on + strand, within SM_b20673 at 1474.527 kb on + strand, within SM_b20673 at 1474.527 kb on + strand, within SM_b20673 at 1474.527 kb on + strand, within SM_b20673 at 1474.527 kb on + strand, within SM_b20673 at 1474.527 kb on + strand, within SM_b20673 at 1474.528 kb on - strand, within SM_b20673 at 1474.528 kb on - strand, within SM_b20673 at 1475.082 kb on + strand, within SM_b20673 at 1475.167 kb on + strand, within SM_b20673 at 1475.167 kb on + strand, within SM_b20673 at 1475.272 kb on + strand, within SM_b20673 at 1475.272 kb on + strand, within SM_b20673 at 1475.272 kb on + strand, within SM_b20673 at 1475.273 kb on - strand, within SM_b20673 at 1475.274 kb on + strand, within SM_b20673 at 1475.275 kb on - strand, within SM_b20673
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 1,472,039 + +0.0 1,472,303 + SM_b20671 0.27 -0.2 1,472,303 + SM_b20671 0.27 +0.0 1,472,304 - SM_b20671 0.27 -0.3 1,472,327 + SM_b20671 0.30 -0.4 1,472,329 + SM_b20671 0.30 -1.1 1,472,330 - SM_b20671 0.30 +0.3 1,472,378 + SM_b20671 0.35 -0.2 1,472,378 + SM_b20671 0.35 +0.2 1,472,379 - SM_b20671 0.35 -0.7 1,472,379 - SM_b20671 0.35 +0.7 1,472,506 + SM_b20671 0.48 -0.4 1,472,507 - SM_b20671 0.48 -0.4 1,472,517 + SM_b20671 0.49 -0.4 1,472,562 - SM_b20671 0.54 +0.0 1,472,615 + SM_b20671 0.60 -0.4 1,472,616 - SM_b20671 0.60 -0.7 1,472,797 + SM_b20671 0.78 -1.1 1,473,027 + -0.9 1,473,128 - -0.2 1,473,379 + SM_b20672 0.28 +0.2 1,473,379 + SM_b20672 0.28 +0.6 1,473,421 + SM_b20672 0.32 +0.3 1,473,421 + SM_b20672 0.32 -0.7 1,473,422 - SM_b20672 0.32 -0.3 1,473,422 - SM_b20672 0.32 +0.0 1,473,422 - SM_b20672 0.32 -1.0 1,473,493 + SM_b20672 0.37 -1.3 1,473,499 + SM_b20672 0.37 +0.4 1,473,500 - SM_b20672 0.38 -0.1 1,473,561 + SM_b20672 0.42 -0.8 1,473,561 + SM_b20672 0.42 +0.8 1,473,561 + SM_b20672 0.42 -0.4 1,473,561 + SM_b20672 0.42 +0.6 1,473,562 - SM_b20672 0.42 -0.4 1,473,605 + SM_b20672 0.46 +0.4 1,473,605 + SM_b20672 0.46 -0.3 1,473,636 - SM_b20672 0.48 -0.0 1,473,929 + SM_b20672 0.70 +0.1 1,473,930 - SM_b20672 0.70 +0.1 1,473,978 + SM_b20672 0.74 -0.1 1,473,978 + SM_b20672 0.74 +0.0 1,473,979 - SM_b20672 0.74 -0.6 1,474,033 + SM_b20672 0.78 -0.7 1,474,033 + SM_b20672 0.78 +0.1 1,474,120 - SM_b20672 0.84 +0.0 1,474,177 - SM_b20672 0.89 +0.0 1,474,288 + +0.3 1,474,527 + SM_b20673 0.13 +0.9 1,474,527 + SM_b20673 0.13 -0.9 1,474,527 + SM_b20673 0.13 -0.9 1,474,527 + SM_b20673 0.13 -0.0 1,474,527 + SM_b20673 0.13 -0.2 1,474,527 + SM_b20673 0.13 -0.6 1,474,527 + SM_b20673 0.13 -0.0 1,474,527 + SM_b20673 0.13 +0.3 1,474,528 - SM_b20673 0.13 +0.8 1,474,528 - SM_b20673 0.13 -0.3 1,475,082 + SM_b20673 0.48 +0.7 1,475,167 + SM_b20673 0.53 +0.2 1,475,167 + SM_b20673 0.53 -1.1 1,475,272 + SM_b20673 0.60 -0.0 1,475,272 + SM_b20673 0.60 +0.7 1,475,272 + SM_b20673 0.60 -0.6 1,475,273 - SM_b20673 0.60 -0.6 1,475,274 + SM_b20673 0.60 -0.3 1,475,275 - SM_b20673 0.60 -0.7
Or see this region's nucleotide sequence