Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20514

Experiment: Uridine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20513 and SM_b20514 are separated by 399 nucleotidesSM_b20514 and SM_b20515 are separated by 89 nucleotides SM_b20513: SM_b20513 - hypothetical protein, at 535,094 to 536,020 _b20513 SM_b20514: SM_b20514 - protein-glutamate methyltransferase, at 536,420 to 537,637 _b20514 SM_b20515: SM_b20515 - chemotaxis methyltransferase, at 537,727 to 541,212 _b20515 Position (kb) 536 537 538Strain fitness (log2 ratio) -2 -1 0 1 2 3at 535.494 kb on + strand, within SM_b20513at 535.495 kb on - strand, within SM_b20513at 535.495 kb on - strand, within SM_b20513at 535.580 kb on + strand, within SM_b20513at 535.621 kb on - strand, within SM_b20513at 535.822 kb on + strand, within SM_b20513at 535.823 kb on - strand, within SM_b20513at 535.868 kb on - strand, within SM_b20513at 535.882 kb on + strand, within SM_b20513at 535.882 kb on + strandat 535.883 kb on - strand, within SM_b20513at 535.909 kb on - strand, within SM_b20513at 535.967 kb on - strandat 535.985 kb on + strandat 535.985 kb on + strandat 535.986 kb on - strandat 535.986 kb on - strandat 536.080 kb on + strandat 536.080 kb on + strandat 536.080 kb on + strandat 536.080 kb on + strandat 536.081 kb on - strandat 536.083 kb on - strandat 536.083 kb on - strandat 536.083 kb on - strandat 536.220 kb on + strandat 536.221 kb on - strandat 536.275 kb on + strandat 536.275 kb on + strandat 536.275 kb on + strandat 536.275 kb on + strandat 536.276 kb on - strandat 536.276 kb on - strandat 536.276 kb on - strandat 536.311 kb on + strandat 536.311 kb on + strandat 536.312 kb on - strandat 536.386 kb on + strandat 536.386 kb on + strandat 536.386 kb on + strandat 536.386 kb on + strandat 536.387 kb on - strandat 536.387 kb on - strandat 536.456 kb on - strandat 536.719 kb on + strand, within SM_b20514at 536.720 kb on - strand, within SM_b20514at 536.721 kb on + strand, within SM_b20514at 536.722 kb on - strand, within SM_b20514at 536.780 kb on + strand, within SM_b20514at 536.781 kb on - strand, within SM_b20514at 536.828 kb on + strand, within SM_b20514at 536.829 kb on - strand, within SM_b20514at 536.853 kb on - strand, within SM_b20514at 536.853 kb on - strand, within SM_b20514at 537.110 kb on + strand, within SM_b20514at 537.111 kb on - strand, within SM_b20514at 537.258 kb on + strand, within SM_b20514at 537.258 kb on + strand, within SM_b20514at 537.258 kb on + strandat 537.258 kb on + strand, within SM_b20514at 537.258 kb on + strand, within SM_b20514at 537.259 kb on - strand, within SM_b20514at 537.329 kb on + strand, within SM_b20514at 537.329 kb on + strand, within SM_b20514at 537.330 kb on - strand, within SM_b20514at 537.342 kb on - strand, within SM_b20514at 537.362 kb on + strand, within SM_b20514at 537.363 kb on - strand, within SM_b20514at 537.368 kb on + strand, within SM_b20514at 537.368 kb on + strand, within SM_b20514at 537.368 kb on + strand, within SM_b20514at 537.368 kb on + strand, within SM_b20514at 537.368 kb on + strand, within SM_b20514at 537.368 kb on + strand, within SM_b20514at 537.369 kb on - strand, within SM_b20514at 537.456 kb on - strand, within SM_b20514at 537.456 kb on - strandat 537.461 kb on + strand, within SM_b20514at 537.461 kb on + strand, within SM_b20514at 537.462 kb on - strand, within SM_b20514at 537.481 kb on + strand, within SM_b20514at 537.481 kb on + strand, within SM_b20514at 537.482 kb on - strand, within SM_b20514at 537.482 kb on - strand, within SM_b20514at 537.482 kb on - strand, within SM_b20514at 537.482 kb on - strand, within SM_b20514at 537.482 kb on - strand, within SM_b20514at 537.482 kb on - strand, within SM_b20514at 537.484 kb on + strand, within SM_b20514at 537.484 kb on + strand, within SM_b20514at 537.484 kb on + strand, within SM_b20514at 537.484 kb on + strand, within SM_b20514at 537.485 kb on - strand, within SM_b20514at 537.519 kb on + strandat 537.588 kb on - strandat 537.599 kb on + strandat 537.601 kb on + strandat 537.602 kb on - strandat 537.623 kb on + strandat 537.623 kb on + strandat 537.623 kb on + strandat 537.624 kb on - strandat 537.624 kb on - strandat 537.625 kb on + strandat 537.626 kb on - strandat 537.626 kb on - strandat 537.626 kb on - strandat 537.628 kb on + strandat 537.628 kb on + strandat 537.629 kb on - strandat 537.629 kb on - strandat 537.629 kb on - strandat 537.660 kb on + strandat 537.660 kb on + strandat 537.810 kb on + strandat 537.956 kb on + strandat 537.956 kb on + strandat 537.956 kb on + strandat 537.957 kb on - strandat 537.958 kb on + strandat 537.958 kb on + strandat 537.959 kb on - strandat 537.985 kb on - strandat 538.198 kb on + strand, within SM_b20515at 538.198 kb on + strand, within SM_b20515at 538.199 kb on - strand, within SM_b20515at 538.254 kb on + strand, within SM_b20515at 538.255 kb on - strand, within SM_b20515at 538.255 kb on - strand, within SM_b20515at 538.257 kb on - strand, within SM_b20515at 538.399 kb on + strand, within SM_b20515at 538.399 kb on + strand, within SM_b20515at 538.399 kb on + strand, within SM_b20515at 538.399 kb on + strand, within SM_b20515at 538.399 kb on + strand, within SM_b20515at 538.399 kb on + strand, within SM_b20515at 538.399 kb on + strand, within SM_b20515at 538.399 kb on + strand, within SM_b20515at 538.400 kb on - strand, within SM_b20515at 538.400 kb on - strand, within SM_b20515at 538.471 kb on + strand, within SM_b20515at 538.471 kb on + strand, within SM_b20515at 538.474 kb on + strand, within SM_b20515at 538.474 kb on + strand, within SM_b20515at 538.474 kb on + strand, within SM_b20515at 538.474 kb on + strand, within SM_b20515at 538.475 kb on - strand, within SM_b20515at 538.480 kb on + strand, within SM_b20515at 538.480 kb on + strand, within SM_b20515

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (C)
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535,494 + SM_b20513 0.43 +0.4
535,495 - SM_b20513 0.43 -0.1
535,495 - SM_b20513 0.43 -0.7
535,580 + SM_b20513 0.52 +1.4
535,621 - SM_b20513 0.57 -0.2
535,822 + SM_b20513 0.79 -0.0
535,823 - SM_b20513 0.79 +1.1
535,868 - SM_b20513 0.83 +0.1
535,882 + SM_b20513 0.85 -0.4
535,882 + +1.4
535,883 - SM_b20513 0.85 +0.2
535,909 - SM_b20513 0.88 -0.1
535,967 - +0.4
535,985 + +0.2
535,985 + +1.1
535,986 - -0.1
535,986 - +0.4
536,080 + +0.2
536,080 + +1.4
536,080 + +0.5
536,080 + -0.5
536,081 - -0.2
536,083 - -1.1
536,083 - -0.2
536,083 - -0.1
536,220 + -0.2
536,221 - +0.0
536,275 + -0.4
536,275 + -0.0
536,275 + +0.1
536,275 + -1.2
536,276 - -0.0
536,276 - +0.3
536,276 - +0.2
536,311 + -1.3
536,311 + -0.4
536,312 - +0.3
536,386 + -0.5
536,386 + +0.6
536,386 + +0.7
536,386 + -0.4
536,387 - +0.5
536,387 - +0.1
536,456 - +1.2
536,719 + SM_b20514 0.25 -0.3
536,720 - SM_b20514 0.25 +0.3
536,721 + SM_b20514 0.25 -0.1
536,722 - SM_b20514 0.25 +0.3
536,780 + SM_b20514 0.30 +0.1
536,781 - SM_b20514 0.30 -0.2
536,828 + SM_b20514 0.33 -0.1
536,829 - SM_b20514 0.34 -0.1
536,853 - SM_b20514 0.36 +0.4
536,853 - SM_b20514 0.36 +0.8
537,110 + SM_b20514 0.57 -0.2
537,111 - SM_b20514 0.57 +0.4
537,258 + SM_b20514 0.69 +0.6
537,258 + SM_b20514 0.69 +0.4
537,258 + +1.2
537,258 + SM_b20514 0.69 +0.3
537,258 + SM_b20514 0.69 +0.1
537,259 - SM_b20514 0.69 -0.5
537,329 + SM_b20514 0.75 -0.5
537,329 + SM_b20514 0.75 -0.2
537,330 - SM_b20514 0.75 +0.6
537,342 - SM_b20514 0.76 -0.3
537,362 + SM_b20514 0.77 -0.6
537,363 - SM_b20514 0.77 +0.3
537,368 + SM_b20514 0.78 -0.0
537,368 + SM_b20514 0.78 +0.1
537,368 + SM_b20514 0.78 +1.1
537,368 + SM_b20514 0.78 +0.0
537,368 + SM_b20514 0.78 -0.0
537,368 + SM_b20514 0.78 +0.6
537,369 - SM_b20514 0.78 -0.0
537,456 - SM_b20514 0.85 -0.1
537,456 - +2.9
537,461 + SM_b20514 0.85 +0.4
537,461 + SM_b20514 0.85 +1.4
537,462 - SM_b20514 0.86 +0.0
537,481 + SM_b20514 0.87 +0.5
537,481 + SM_b20514 0.87 -0.2
537,482 - SM_b20514 0.87 +0.5
537,482 - SM_b20514 0.87 -0.4
537,482 - SM_b20514 0.87 +0.8
537,482 - SM_b20514 0.87 +0.8
537,482 - SM_b20514 0.87 -0.0
537,482 - SM_b20514 0.87 -0.0
537,484 + SM_b20514 0.87 +0.6
537,484 + SM_b20514 0.87 -0.3
537,484 + SM_b20514 0.87 -0.2
537,484 + SM_b20514 0.87 +0.1
537,485 - SM_b20514 0.87 +0.5
537,519 + +1.0
537,588 - -0.7
537,599 + -0.1
537,601 + -0.0
537,602 - +0.0
537,623 + +0.3
537,623 + +0.2
537,623 + -0.1
537,624 - -0.0
537,624 - -1.1
537,625 + +1.1
537,626 - -0.9
537,626 - -0.4
537,626 - -0.4
537,628 + +0.4
537,628 + +0.3
537,629 - -0.1
537,629 - +0.1
537,629 - +0.2
537,660 + +0.6
537,660 + -0.1
537,810 + +0.9
537,956 + +0.2
537,956 + +0.4
537,956 + +0.5
537,957 - -0.3
537,958 + +0.0
537,958 + -0.4
537,959 - -2.5
537,985 - +0.0
538,198 + SM_b20515 0.14 -0.5
538,198 + SM_b20515 0.14 +0.3
538,199 - SM_b20515 0.14 -0.0
538,254 + SM_b20515 0.15 +0.1
538,255 - SM_b20515 0.15 -1.6
538,255 - SM_b20515 0.15 -0.7
538,257 - SM_b20515 0.15 +0.2
538,399 + SM_b20515 0.19 +0.1
538,399 + SM_b20515 0.19 -0.1
538,399 + SM_b20515 0.19 -0.0
538,399 + SM_b20515 0.19 -1.4
538,399 + SM_b20515 0.19 -1.1
538,399 + SM_b20515 0.19 +1.6
538,399 + SM_b20515 0.19 -0.2
538,399 + SM_b20515 0.19 -0.6
538,400 - SM_b20515 0.19 -0.7
538,400 - SM_b20515 0.19 -0.5
538,471 + SM_b20515 0.21 -0.6
538,471 + SM_b20515 0.21 -0.4
538,474 + SM_b20515 0.21 +0.1
538,474 + SM_b20515 0.21 -0.1
538,474 + SM_b20515 0.21 -0.9
538,474 + SM_b20515 0.21 -0.3
538,475 - SM_b20515 0.21 +0.0
538,480 + SM_b20515 0.22 -0.8
538,480 + SM_b20515 0.22 +1.9

Or see this region's nucleotide sequence