Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20394 and SM_b20395 are separated by 39 nucleotides SM_b20395 and SM_b20396 are separated by 43 nucleotides
SM_b20394: SM_b20394 - hypothetical protein, at 407,812 to 409,140
_b20394
SM_b20395: SM_b20395 - dehydrogenase, at 409,180 to 411,429
_b20395
SM_b20396: SM_b20396 - dehydrogenase, at 411,473 to 412,456
_b20396
Position (kb) 409
410
411
412 Strain fitness (log2 ratio) -2
-1
0
1 at 408.241 kb on + strand, within SM_b20394 at 408.350 kb on + strand, within SM_b20394 at 408.350 kb on + strand, within SM_b20394 at 408.351 kb on - strand, within SM_b20394 at 408.529 kb on + strand, within SM_b20394 at 408.529 kb on + strand, within SM_b20394 at 408.529 kb on + strand, within SM_b20394 at 408.529 kb on + strand, within SM_b20394 at 408.529 kb on + strand, within SM_b20394 at 408.529 kb on + strand, within SM_b20394 at 408.530 kb on - strand, within SM_b20394 at 408.530 kb on - strand, within SM_b20394 at 408.797 kb on - strand, within SM_b20394 at 408.946 kb on - strand, within SM_b20394 at 408.987 kb on + strand, within SM_b20394 at 408.988 kb on - strand, within SM_b20394 at 408.988 kb on - strand, within SM_b20394 at 409.041 kb on + strand at 409.109 kb on - strand at 409.183 kb on + strand at 409.273 kb on + strand at 409.274 kb on - strand at 409.311 kb on + strand at 409.311 kb on + strand at 409.311 kb on + strand at 409.311 kb on + strand at 409.311 kb on + strand at 409.312 kb on - strand at 409.312 kb on - strand at 409.334 kb on + strand at 409.334 kb on + strand at 409.334 kb on + strand at 409.379 kb on + strand at 409.694 kb on + strand, within SM_b20395 at 409.694 kb on + strand, within SM_b20395 at 409.863 kb on + strand, within SM_b20395 at 409.863 kb on + strand, within SM_b20395 at 410.079 kb on - strand, within SM_b20395 at 410.079 kb on - strand, within SM_b20395 at 410.079 kb on - strand, within SM_b20395 at 410.411 kb on + strand, within SM_b20395 at 410.412 kb on - strand, within SM_b20395 at 410.412 kb on - strand, within SM_b20395 at 410.412 kb on - strand, within SM_b20395 at 410.835 kb on + strand, within SM_b20395 at 410.843 kb on + strand, within SM_b20395 at 411.006 kb on - strand, within SM_b20395 at 411.151 kb on + strand, within SM_b20395 at 411.151 kb on + strand, within SM_b20395 at 411.208 kb on + strand at 411.209 kb on - strand at 411.211 kb on + strand at 411.212 kb on - strand at 411.212 kb on - strand at 411.294 kb on - strand at 411.451 kb on - strand at 411.451 kb on - strand at 411.474 kb on + strand at 411.474 kb on + strand at 411.475 kb on - strand at 411.475 kb on - strand at 411.747 kb on + strand, within SM_b20396 at 411.747 kb on + strand, within SM_b20396 at 411.747 kb on + strand, within SM_b20396 at 411.748 kb on - strand, within SM_b20396 at 411.748 kb on - strand, within SM_b20396 at 411.775 kb on - strand, within SM_b20396 at 411.965 kb on - strand, within SM_b20396 at 411.965 kb on - strand, within SM_b20396 at 411.965 kb on - strand, within SM_b20396 at 412.243 kb on + strand, within SM_b20396 at 412.243 kb on + strand, within SM_b20396 at 412.244 kb on - strand, within SM_b20396 at 412.244 kb on - strand, within SM_b20396 at 412.244 kb on - strand, within SM_b20396
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 408,241 + SM_b20394 0.32 +0.2 408,350 + SM_b20394 0.40 +0.3 408,350 + SM_b20394 0.40 -0.5 408,351 - SM_b20394 0.41 -0.6 408,529 + SM_b20394 0.54 -1.0 408,529 + SM_b20394 0.54 +0.3 408,529 + SM_b20394 0.54 +0.8 408,529 + SM_b20394 0.54 +1.0 408,529 + SM_b20394 0.54 +0.3 408,529 + SM_b20394 0.54 -0.2 408,530 - SM_b20394 0.54 +0.2 408,530 - SM_b20394 0.54 +0.3 408,797 - SM_b20394 0.74 +0.3 408,946 - SM_b20394 0.85 -0.0 408,987 + SM_b20394 0.88 -0.1 408,988 - SM_b20394 0.88 -1.0 408,988 - SM_b20394 0.88 +0.7 409,041 + -0.3 409,109 - -0.1 409,183 + -0.9 409,273 + -0.2 409,274 - +0.4 409,311 + -0.3 409,311 + +0.2 409,311 + +0.3 409,311 + +0.2 409,311 + +0.0 409,312 - -0.7 409,312 - +0.3 409,334 + -0.4 409,334 + +0.7 409,334 + -0.3 409,379 + +0.2 409,694 + SM_b20395 0.23 +0.4 409,694 + SM_b20395 0.23 -0.1 409,863 + SM_b20395 0.30 +0.9 409,863 + SM_b20395 0.30 +1.2 410,079 - SM_b20395 0.40 +1.4 410,079 - SM_b20395 0.40 +0.1 410,079 - SM_b20395 0.40 +0.2 410,411 + SM_b20395 0.55 -0.5 410,412 - SM_b20395 0.55 +0.5 410,412 - SM_b20395 0.55 -0.6 410,412 - SM_b20395 0.55 -0.2 410,835 + SM_b20395 0.74 -0.1 410,843 + SM_b20395 0.74 -0.1 411,006 - SM_b20395 0.81 +0.2 411,151 + SM_b20395 0.88 +0.8 411,151 + SM_b20395 0.88 +0.2 411,208 + +0.3 411,209 - -0.1 411,211 + -0.8 411,212 - +1.0 411,212 - +0.4 411,294 - +0.5 411,451 - -0.6 411,451 - -0.2 411,474 + -0.2 411,474 + +0.4 411,475 - -0.1 411,475 - -0.4 411,747 + SM_b20396 0.28 +0.7 411,747 + SM_b20396 0.28 +0.5 411,747 + SM_b20396 0.28 -0.2 411,748 - SM_b20396 0.28 -0.4 411,748 - SM_b20396 0.28 +0.2 411,775 - SM_b20396 0.31 -0.3 411,965 - SM_b20396 0.50 +0.2 411,965 - SM_b20396 0.50 +0.2 411,965 - SM_b20396 0.50 +1.4 412,243 + SM_b20396 0.78 -0.1 412,243 + SM_b20396 0.78 -0.4 412,244 - SM_b20396 0.78 +0.2 412,244 - SM_b20396 0.78 -2.1 412,244 - SM_b20396 0.78 +0.9
Or see this region's nucleotide sequence