Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20349 and SM_b20350 are separated by 165 nucleotides SM_b20350 and SM_b20351 overlap by 4 nucleotides SM_b20351 and SM_b20352 overlap by 1 nucleotides
SM_b20349: SM_b20349 - sugar ABC transporter, at 356,464 to 357,405
_b20349
SM_b20350: SM_b20350 - hypothetical protein, at 357,571 to 358,215
_b20350
SM_b20351: SM_b20351 - sugar ABC transporter ATP-binding protein, at 358,212 to 359,762
_b20351
SM_b20352: SM_b20352 - sugar ABC transporter permease, at 359,762 to 360,826
_b20352
Position (kb) 358
359
360 Strain fitness (log2 ratio) -2
-1
0
1
2 at 357.259 kb on + strand, within SM_b20349 at 357.260 kb on - strand, within SM_b20349 at 357.298 kb on + strand, within SM_b20349 at 357.299 kb on - strand, within SM_b20349 at 357.739 kb on + strand, within SM_b20350 at 357.817 kb on + strand, within SM_b20350 at 357.885 kb on + strand, within SM_b20350 at 357.886 kb on - strand, within SM_b20350 at 357.914 kb on - strand, within SM_b20350 at 358.275 kb on + strand at 358.284 kb on - strand at 358.285 kb on + strand at 358.286 kb on - strand at 358.725 kb on - strand, within SM_b20351 at 358.821 kb on + strand, within SM_b20351 at 358.822 kb on - strand, within SM_b20351 at 358.863 kb on + strand, within SM_b20351 at 358.863 kb on + strand, within SM_b20351 at 358.864 kb on - strand, within SM_b20351 at 358.864 kb on - strand, within SM_b20351 at 358.864 kb on - strand, within SM_b20351 at 358.922 kb on + strand, within SM_b20351 at 359.078 kb on - strand, within SM_b20351 at 359.078 kb on - strand, within SM_b20351 at 359.103 kb on + strand, within SM_b20351 at 359.103 kb on + strand, within SM_b20351 at 359.104 kb on - strand, within SM_b20351 at 359.104 kb on - strand, within SM_b20351 at 359.248 kb on + strand, within SM_b20351 at 359.249 kb on - strand, within SM_b20351 at 359.348 kb on + strand, within SM_b20351 at 359.348 kb on + strand, within SM_b20351 at 359.349 kb on - strand, within SM_b20351 at 359.349 kb on - strand, within SM_b20351 at 359.530 kb on + strand, within SM_b20351 at 359.531 kb on - strand, within SM_b20351 at 359.531 kb on - strand, within SM_b20351 at 359.531 kb on - strand, within SM_b20351 at 359.717 kb on - strand at 359.738 kb on + strand at 359.738 kb on + strand at 359.815 kb on - strand at 359.914 kb on - strand, within SM_b20352 at 359.914 kb on - strand, within SM_b20352 at 360.087 kb on - strand, within SM_b20352 at 360.163 kb on + strand, within SM_b20352 at 360.377 kb on + strand, within SM_b20352 at 360.390 kb on - strand, within SM_b20352 at 360.392 kb on - strand, within SM_b20352 at 360.392 kb on - strand, within SM_b20352 at 360.392 kb on - strand, within SM_b20352 at 360.486 kb on - strand, within SM_b20352 at 360.486 kb on - strand, within SM_b20352 at 360.486 kb on - strand, within SM_b20352
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 357,259 + SM_b20349 0.84 +0.6 357,260 - SM_b20349 0.85 +0.4 357,298 + SM_b20349 0.89 +1.5 357,299 - SM_b20349 0.89 +0.4 357,739 + SM_b20350 0.26 -0.6 357,817 + SM_b20350 0.38 +0.2 357,885 + SM_b20350 0.49 -1.4 357,886 - SM_b20350 0.49 +0.4 357,914 - SM_b20350 0.53 -0.2 358,275 + +0.9 358,284 - -0.2 358,285 + -0.0 358,286 - -0.1 358,725 - SM_b20351 0.33 +0.0 358,821 + SM_b20351 0.39 +0.1 358,822 - SM_b20351 0.39 -0.1 358,863 + SM_b20351 0.42 -1.4 358,863 + SM_b20351 0.42 +0.0 358,864 - SM_b20351 0.42 -0.0 358,864 - SM_b20351 0.42 +0.1 358,864 - SM_b20351 0.42 +0.8 358,922 + SM_b20351 0.46 +0.5 359,078 - SM_b20351 0.56 +0.2 359,078 - SM_b20351 0.56 -1.4 359,103 + SM_b20351 0.57 +0.4 359,103 + SM_b20351 0.57 -1.7 359,104 - SM_b20351 0.58 -0.2 359,104 - SM_b20351 0.58 -0.2 359,248 + SM_b20351 0.67 -0.0 359,249 - SM_b20351 0.67 -0.3 359,348 + SM_b20351 0.73 -0.1 359,348 + SM_b20351 0.73 -0.2 359,349 - SM_b20351 0.73 -2.0 359,349 - SM_b20351 0.73 -0.3 359,530 + SM_b20351 0.85 -1.4 359,531 - SM_b20351 0.85 +0.1 359,531 - SM_b20351 0.85 -0.3 359,531 - SM_b20351 0.85 +2.3 359,717 - +0.0 359,738 + -0.2 359,738 + -1.3 359,815 - -0.0 359,914 - SM_b20352 0.14 -0.2 359,914 - SM_b20352 0.14 -1.2 360,087 - SM_b20352 0.31 +0.1 360,163 + SM_b20352 0.38 +0.0 360,377 + SM_b20352 0.58 -1.1 360,390 - SM_b20352 0.59 -0.3 360,392 - SM_b20352 0.59 -0.4 360,392 - SM_b20352 0.59 -0.2 360,392 - SM_b20352 0.59 +0.2 360,486 - SM_b20352 0.68 +0.4 360,486 - SM_b20352 0.68 +0.1 360,486 - SM_b20352 0.68 +0.0
Or see this region's nucleotide sequence