Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_614 and Pf6N2E2_615 are separated by 156 nucleotides Pf6N2E2_615 and Pf6N2E2_616 are separated by 173 nucleotides Pf6N2E2_616 and Pf6N2E2_617 are separated by 143 nucleotides
Pf6N2E2_614 - 3-carboxymuconate cyclase, at 697,856 to 699,031
_614
Pf6N2E2_615 - FIG00957600: hypothetical protein, at 699,188 to 699,367
_615
Pf6N2E2_616 - hypothetical protein, at 699,541 to 699,666
_616
Pf6N2E2_617 - Probable glutathione S-transferase, at 699,810 to 700,412
_617
Position (kb) 699
700 Strain fitness (log2 ratio) -2
-1
0
1 at 698.266 kb on + strand, within Pf6N2E2_614 at 698.266 kb on + strand, within Pf6N2E2_614 at 698.270 kb on + strand, within Pf6N2E2_614 at 698.270 kb on + strand, within Pf6N2E2_614 at 698.270 kb on + strand, within Pf6N2E2_614 at 698.271 kb on - strand, within Pf6N2E2_614 at 698.271 kb on - strand, within Pf6N2E2_614 at 698.438 kb on + strand, within Pf6N2E2_614 at 698.438 kb on + strand, within Pf6N2E2_614 at 698.438 kb on + strand, within Pf6N2E2_614 at 698.438 kb on + strand, within Pf6N2E2_614 at 698.439 kb on - strand, within Pf6N2E2_614 at 698.439 kb on - strand, within Pf6N2E2_614 at 698.439 kb on - strand, within Pf6N2E2_614 at 698.439 kb on - strand, within Pf6N2E2_614 at 698.439 kb on - strand, within Pf6N2E2_614 at 698.439 kb on - strand, within Pf6N2E2_614 at 698.472 kb on + strand, within Pf6N2E2_614 at 698.472 kb on + strand, within Pf6N2E2_614 at 698.472 kb on + strand, within Pf6N2E2_614 at 698.472 kb on + strand, within Pf6N2E2_614 at 698.472 kb on + strand, within Pf6N2E2_614 at 698.473 kb on - strand, within Pf6N2E2_614 at 698.473 kb on - strand, within Pf6N2E2_614 at 698.756 kb on + strand, within Pf6N2E2_614 at 698.756 kb on + strand, within Pf6N2E2_614 at 699.067 kb on + strand at 699.068 kb on - strand at 699.068 kb on - strand at 699.098 kb on - strand at 699.299 kb on + strand, within Pf6N2E2_615 at 699.299 kb on + strand, within Pf6N2E2_615 at 699.300 kb on - strand, within Pf6N2E2_615 at 699.311 kb on + strand, within Pf6N2E2_615 at 699.311 kb on + strand, within Pf6N2E2_615 at 699.312 kb on - strand, within Pf6N2E2_615 at 699.335 kb on + strand, within Pf6N2E2_615 at 699.527 kb on + strand at 699.527 kb on + strand at 699.528 kb on - strand at 699.578 kb on - strand, within Pf6N2E2_616 at 699.812 kb on - strand at 700.076 kb on - strand, within Pf6N2E2_617 at 700.076 kb on - strand, within Pf6N2E2_617 at 700.081 kb on + strand, within Pf6N2E2_617 at 700.081 kb on + strand, within Pf6N2E2_617 at 700.082 kb on - strand, within Pf6N2E2_617
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 698,266 + Pf6N2E2_614 0.35 -0.6 698,266 + Pf6N2E2_614 0.35 +0.8 698,270 + Pf6N2E2_614 0.35 +0.3 698,270 + Pf6N2E2_614 0.35 +0.0 698,270 + Pf6N2E2_614 0.35 +0.7 698,271 - Pf6N2E2_614 0.35 +0.1 698,271 - Pf6N2E2_614 0.35 -1.1 698,438 + Pf6N2E2_614 0.49 +0.4 698,438 + Pf6N2E2_614 0.49 -0.2 698,438 + Pf6N2E2_614 0.49 +0.9 698,438 + Pf6N2E2_614 0.49 +0.8 698,439 - Pf6N2E2_614 0.50 +0.5 698,439 - Pf6N2E2_614 0.50 -0.5 698,439 - Pf6N2E2_614 0.50 +0.2 698,439 - Pf6N2E2_614 0.50 +0.8 698,439 - Pf6N2E2_614 0.50 -0.4 698,439 - Pf6N2E2_614 0.50 +0.4 698,472 + Pf6N2E2_614 0.52 -1.0 698,472 + Pf6N2E2_614 0.52 +0.0 698,472 + Pf6N2E2_614 0.52 +1.2 698,472 + Pf6N2E2_614 0.52 +1.1 698,472 + Pf6N2E2_614 0.52 +1.6 698,473 - Pf6N2E2_614 0.52 +0.2 698,473 - Pf6N2E2_614 0.52 -0.3 698,756 + Pf6N2E2_614 0.77 -1.2 698,756 + Pf6N2E2_614 0.77 -1.0 699,067 + +0.6 699,068 - -0.8 699,068 - -0.3 699,098 - -0.4 699,299 + Pf6N2E2_615 0.62 -0.9 699,299 + Pf6N2E2_615 0.62 -0.2 699,300 - Pf6N2E2_615 0.62 -1.1 699,311 + Pf6N2E2_615 0.68 -2.2 699,311 + Pf6N2E2_615 0.68 -0.2 699,312 - Pf6N2E2_615 0.69 +0.1 699,335 + Pf6N2E2_615 0.82 +0.1 699,527 + -0.6 699,527 + -0.1 699,528 - -0.1 699,578 - Pf6N2E2_616 0.29 -0.2 699,812 - -0.6 700,076 - Pf6N2E2_617 0.44 -2.1 700,076 - Pf6N2E2_617 0.44 -0.0 700,081 + Pf6N2E2_617 0.45 +0.5 700,081 + Pf6N2E2_617 0.45 +1.6 700,082 - Pf6N2E2_617 0.45 +0.8
Or see this region's nucleotide sequence