Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5765 and Pf6N2E2_5766 are separated by 41 nucleotides Pf6N2E2_5766 and Pf6N2E2_5767 are separated by 118 nucleotides
Pf6N2E2_5765 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 6,579,863 to 6,581,737
_5765
Pf6N2E2_5766 - Quaternary ammonium compound-resistance protein SugE, at 6,581,779 to 6,582,093
_5766
Pf6N2E2_5767 - Sodium-dependent transporter, at 6,582,212 to 6,583,177
_5767
Position (kb)
6581
6582
6583 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 6580.848 kb on + strand, within Pf6N2E2_5765 at 6580.916 kb on + strand, within Pf6N2E2_5765 at 6580.916 kb on + strand, within Pf6N2E2_5765 at 6580.916 kb on + strand, within Pf6N2E2_5765 at 6580.916 kb on + strand, within Pf6N2E2_5765 at 6580.931 kb on + strand, within Pf6N2E2_5765 at 6581.117 kb on + strand, within Pf6N2E2_5765 at 6581.118 kb on - strand, within Pf6N2E2_5765 at 6581.118 kb on - strand, within Pf6N2E2_5765 at 6581.183 kb on + strand, within Pf6N2E2_5765 at 6581.315 kb on + strand, within Pf6N2E2_5765 at 6581.315 kb on + strand, within Pf6N2E2_5765 at 6581.315 kb on + strand, within Pf6N2E2_5765 at 6581.316 kb on - strand, within Pf6N2E2_5765 at 6581.316 kb on - strand, within Pf6N2E2_5765 at 6581.316 kb on - strand, within Pf6N2E2_5765 at 6581.316 kb on - strand, within Pf6N2E2_5765 at 6581.318 kb on + strand, within Pf6N2E2_5765 at 6581.319 kb on - strand, within Pf6N2E2_5765 at 6581.319 kb on - strand, within Pf6N2E2_5765 at 6581.319 kb on - strand, within Pf6N2E2_5765 at 6581.319 kb on - strand, within Pf6N2E2_5765 at 6581.327 kb on + strand, within Pf6N2E2_5765 at 6581.328 kb on - strand, within Pf6N2E2_5765 at 6581.328 kb on - strand, within Pf6N2E2_5765 at 6581.328 kb on - strand, within Pf6N2E2_5765 at 6581.328 kb on - strand, within Pf6N2E2_5765 at 6581.404 kb on + strand, within Pf6N2E2_5765 at 6581.404 kb on + strand, within Pf6N2E2_5765 at 6581.404 kb on + strand, within Pf6N2E2_5765 at 6581.404 kb on + strand, within Pf6N2E2_5765 at 6581.404 kb on + strand, within Pf6N2E2_5765 at 6581.404 kb on + strand, within Pf6N2E2_5765 at 6581.404 kb on + strand, within Pf6N2E2_5765 at 6581.405 kb on - strand, within Pf6N2E2_5765 at 6581.405 kb on - strand, within Pf6N2E2_5765 at 6581.405 kb on - strand, within Pf6N2E2_5765 at 6581.405 kb on - strand, within Pf6N2E2_5765 at 6581.405 kb on - strand, within Pf6N2E2_5765 at 6581.405 kb on - strand, within Pf6N2E2_5765 at 6581.405 kb on - strand, within Pf6N2E2_5765 at 6581.405 kb on - strand, within Pf6N2E2_5765 at 6581.405 kb on - strand, within Pf6N2E2_5765 at 6581.405 kb on - strand, within Pf6N2E2_5765 at 6581.405 kb on - strand, within Pf6N2E2_5765 at 6581.405 kb on - strand, within Pf6N2E2_5765 at 6581.408 kb on + strand, within Pf6N2E2_5765 at 6581.409 kb on - strand, within Pf6N2E2_5765 at 6581.439 kb on - strand, within Pf6N2E2_5765 at 6581.439 kb on - strand, within Pf6N2E2_5765 at 6581.735 kb on + strand at 6581.775 kb on + strand at 6581.776 kb on - strand at 6581.776 kb on - strand at 6581.776 kb on - strand at 6581.776 kb on - strand at 6582.030 kb on - strand, within Pf6N2E2_5766 at 6582.141 kb on + strand at 6582.236 kb on + strand at 6582.237 kb on - strand at 6582.237 kb on - strand at 6582.274 kb on - strand at 6582.415 kb on + strand, within Pf6N2E2_5767 at 6582.416 kb on - strand, within Pf6N2E2_5767 at 6582.416 kb on - strand, within Pf6N2E2_5767 at 6582.416 kb on - strand, within Pf6N2E2_5767 at 6582.416 kb on - strand, within Pf6N2E2_5767 at 6582.416 kb on - strand, within Pf6N2E2_5767 at 6582.456 kb on + strand, within Pf6N2E2_5767 at 6582.457 kb on - strand, within Pf6N2E2_5767 at 6582.596 kb on + strand, within Pf6N2E2_5767 at 6582.597 kb on - strand, within Pf6N2E2_5767 at 6582.597 kb on - strand, within Pf6N2E2_5767 at 6582.597 kb on - strand, within Pf6N2E2_5767 at 6582.597 kb on - strand, within Pf6N2E2_5767 at 6582.597 kb on - strand, within Pf6N2E2_5767 at 6582.659 kb on - strand, within Pf6N2E2_5767
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 6,580,848 + Pf6N2E2_5765 0.53 +1.1 6,580,916 + Pf6N2E2_5765 0.56 +0.9 6,580,916 + Pf6N2E2_5765 0.56 +2.1 6,580,916 + Pf6N2E2_5765 0.56 -0.1 6,580,916 + Pf6N2E2_5765 0.56 -1.0 6,580,931 + Pf6N2E2_5765 0.57 +0.9 6,581,117 + Pf6N2E2_5765 0.67 +1.6 6,581,118 - Pf6N2E2_5765 0.67 -0.1 6,581,118 - Pf6N2E2_5765 0.67 -0.5 6,581,183 + Pf6N2E2_5765 0.70 +1.1 6,581,315 + Pf6N2E2_5765 0.77 +0.8 6,581,315 + Pf6N2E2_5765 0.77 +1.0 6,581,315 + Pf6N2E2_5765 0.77 -0.7 6,581,316 - Pf6N2E2_5765 0.77 -0.4 6,581,316 - Pf6N2E2_5765 0.77 +0.8 6,581,316 - Pf6N2E2_5765 0.77 -0.9 6,581,316 - Pf6N2E2_5765 0.77 +0.1 6,581,318 + Pf6N2E2_5765 0.78 -0.1 6,581,319 - Pf6N2E2_5765 0.78 -0.6 6,581,319 - Pf6N2E2_5765 0.78 -0.3 6,581,319 - Pf6N2E2_5765 0.78 -0.2 6,581,319 - Pf6N2E2_5765 0.78 +0.0 6,581,327 + Pf6N2E2_5765 0.78 -0.9 6,581,328 - Pf6N2E2_5765 0.78 +0.0 6,581,328 - Pf6N2E2_5765 0.78 +1.1 6,581,328 - Pf6N2E2_5765 0.78 -0.7 6,581,328 - Pf6N2E2_5765 0.78 -1.2 6,581,404 + Pf6N2E2_5765 0.82 -1.3 6,581,404 + Pf6N2E2_5765 0.82 +1.3 6,581,404 + Pf6N2E2_5765 0.82 +0.4 6,581,404 + Pf6N2E2_5765 0.82 -0.8 6,581,404 + Pf6N2E2_5765 0.82 +0.5 6,581,404 + Pf6N2E2_5765 0.82 -0.5 6,581,404 + Pf6N2E2_5765 0.82 +0.4 6,581,405 - Pf6N2E2_5765 0.82 -0.0 6,581,405 - Pf6N2E2_5765 0.82 +1.2 6,581,405 - Pf6N2E2_5765 0.82 -0.5 6,581,405 - Pf6N2E2_5765 0.82 -0.4 6,581,405 - Pf6N2E2_5765 0.82 +0.6 6,581,405 - Pf6N2E2_5765 0.82 -0.5 6,581,405 - Pf6N2E2_5765 0.82 -0.1 6,581,405 - Pf6N2E2_5765 0.82 +0.7 6,581,405 - Pf6N2E2_5765 0.82 +3.4 6,581,405 - Pf6N2E2_5765 0.82 -0.0 6,581,405 - Pf6N2E2_5765 0.82 -2.3 6,581,405 - Pf6N2E2_5765 0.82 -1.3 6,581,408 + Pf6N2E2_5765 0.82 -0.3 6,581,409 - Pf6N2E2_5765 0.82 +0.5 6,581,439 - Pf6N2E2_5765 0.84 +0.1 6,581,439 - Pf6N2E2_5765 0.84 +0.3 6,581,735 + -0.9 6,581,775 + -0.0 6,581,776 - +0.4 6,581,776 - -0.9 6,581,776 - -0.3 6,581,776 - +0.5 6,582,030 - Pf6N2E2_5766 0.80 -1.1 6,582,141 + +1.0 6,582,236 + +0.4 6,582,237 - -0.3 6,582,237 - -0.7 6,582,274 - +0.2 6,582,415 + Pf6N2E2_5767 0.21 -0.6 6,582,416 - Pf6N2E2_5767 0.21 +0.2 6,582,416 - Pf6N2E2_5767 0.21 +0.3 6,582,416 - Pf6N2E2_5767 0.21 -0.6 6,582,416 - Pf6N2E2_5767 0.21 -0.8 6,582,416 - Pf6N2E2_5767 0.21 +0.7 6,582,456 + Pf6N2E2_5767 0.25 +0.4 6,582,457 - Pf6N2E2_5767 0.25 -0.0 6,582,596 + Pf6N2E2_5767 0.40 +0.4 6,582,597 - Pf6N2E2_5767 0.40 -0.5 6,582,597 - Pf6N2E2_5767 0.40 -1.8 6,582,597 - Pf6N2E2_5767 0.40 +0.2 6,582,597 - Pf6N2E2_5767 0.40 -0.3 6,582,597 - Pf6N2E2_5767 0.40 +0.3 6,582,659 - Pf6N2E2_5767 0.46 +0.6
Or see this region's nucleotide sequence