Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5756

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5754 and Pf6N2E2_5755 are separated by 144 nucleotidesPf6N2E2_5755 and Pf6N2E2_5756 are separated by 276 nucleotidesPf6N2E2_5756 and Pf6N2E2_5757 are separated by 953 nucleotides Pf6N2E2_5754 - Long-chain fatty acid transport protein, at 6,567,051 to 6,568,325 _5754 Pf6N2E2_5755 - FIG00956435: hypothetical protein, at 6,568,470 to 6,568,952 _5755 Pf6N2E2_5756 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 6,569,229 to 6,569,453 _5756 Pf6N2E2_5757 - hypothetical protein, at 6,570,407 to 6,570,595 _5757 Position (kb) 6569 6570Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6568.329 kb on + strandat 6568.329 kb on + strandat 6568.330 kb on - strandat 6568.361 kb on - strandat 6568.405 kb on - strandat 6568.716 kb on + strand, within Pf6N2E2_5755at 6568.717 kb on - strand, within Pf6N2E2_5755at 6568.750 kb on + strand, within Pf6N2E2_5755at 6568.750 kb on + strand, within Pf6N2E2_5755at 6568.751 kb on - strand, within Pf6N2E2_5755at 6568.897 kb on + strand, within Pf6N2E2_5755at 6568.921 kb on + strandat 6568.921 kb on + strandat 6568.921 kb on + strandat 6568.921 kb on + strandat 6568.921 kb on + strandat 6568.952 kb on + strandat 6568.952 kb on + strandat 6568.952 kb on + strandat 6569.068 kb on + strandat 6569.117 kb on + strandat 6569.117 kb on + strandat 6569.117 kb on + strandat 6569.124 kb on + strandat 6569.124 kb on + strandat 6569.125 kb on - strandat 6569.137 kb on - strandat 6569.253 kb on - strand, within Pf6N2E2_5756at 6569.253 kb on - strand, within Pf6N2E2_5756at 6569.291 kb on - strand, within Pf6N2E2_5756at 6569.291 kb on - strand, within Pf6N2E2_5756at 6569.423 kb on + strand, within Pf6N2E2_5756at 6569.457 kb on - strandat 6569.483 kb on + strandat 6569.484 kb on - strandat 6569.501 kb on - strandat 6569.576 kb on + strandat 6569.576 kb on + strandat 6569.577 kb on - strandat 6569.577 kb on - strandat 6569.577 kb on - strandat 6569.577 kb on - strandat 6569.578 kb on + strandat 6569.578 kb on + strandat 6569.579 kb on - strandat 6569.579 kb on - strandat 6569.579 kb on - strandat 6569.579 kb on - strandat 6569.579 kb on - strandat 6569.579 kb on - strandat 6569.579 kb on - strandat 6569.579 kb on - strandat 6569.579 kb on - strandat 6569.579 kb on - strandat 6569.605 kb on + strandat 6569.606 kb on - strandat 6569.609 kb on + strandat 6569.609 kb on + strandat 6569.609 kb on + strandat 6569.610 kb on - strandat 6569.610 kb on - strandat 6569.610 kb on - strandat 6569.610 kb on - strandat 6569.613 kb on + strandat 6569.613 kb on + strandat 6569.613 kb on + strandat 6569.613 kb on + strandat 6569.613 kb on + strandat 6569.614 kb on - strandat 6569.614 kb on - strandat 6569.614 kb on - strandat 6569.614 kb on - strandat 6569.614 kb on - strandat 6569.614 kb on - strandat 6569.614 kb on - strandat 6569.614 kb on - strandat 6569.700 kb on - strandat 6569.755 kb on + strandat 6569.862 kb on + strandat 6569.862 kb on + strandat 6569.863 kb on - strandat 6569.863 kb on - strandat 6569.866 kb on - strandat 6569.922 kb on + strandat 6569.938 kb on - strandat 6570.089 kb on + strandat 6570.089 kb on + strandat 6570.090 kb on - strandat 6570.090 kb on - strandat 6570.090 kb on - strandat 6570.090 kb on - strandat 6570.090 kb on - strandat 6570.090 kb on - strandat 6570.090 kb on - strandat 6570.090 kb on - strandat 6570.198 kb on + strandat 6570.198 kb on + strandat 6570.198 kb on + strandat 6570.198 kb on + strandat 6570.198 kb on + strandat 6570.199 kb on - strandat 6570.199 kb on - strandat 6570.199 kb on - strandat 6570.199 kb on - strandat 6570.199 kb on - strandat 6570.199 kb on - strandat 6570.199 kb on - strandat 6570.199 kb on - strandat 6570.199 kb on - strandat 6570.216 kb on + strandat 6570.216 kb on + strandat 6570.217 kb on - strandat 6570.446 kb on + strand, within Pf6N2E2_5757

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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6,568,329 + -0.2
6,568,329 + -0.5
6,568,330 - -0.6
6,568,361 - +0.1
6,568,405 - -2.0
6,568,716 + Pf6N2E2_5755 0.51 +0.3
6,568,717 - Pf6N2E2_5755 0.51 -0.4
6,568,750 + Pf6N2E2_5755 0.58 -0.3
6,568,750 + Pf6N2E2_5755 0.58 -0.3
6,568,751 - Pf6N2E2_5755 0.58 +0.1
6,568,897 + Pf6N2E2_5755 0.88 +1.0
6,568,921 + +1.3
6,568,921 + -0.3
6,568,921 + +1.5
6,568,921 + +1.2
6,568,921 + +0.1
6,568,952 + -0.1
6,568,952 + -0.5
6,568,952 + +0.6
6,569,068 + -0.7
6,569,117 + -1.8
6,569,117 + +0.3
6,569,117 + +0.6
6,569,124 + +1.3
6,569,124 + -0.4
6,569,125 - -0.2
6,569,137 - -0.6
6,569,253 - Pf6N2E2_5756 0.11 -2.7
6,569,253 - Pf6N2E2_5756 0.11 +0.0
6,569,291 - Pf6N2E2_5756 0.28 -0.6
6,569,291 - Pf6N2E2_5756 0.28 -1.7
6,569,423 + Pf6N2E2_5756 0.86 -1.3
6,569,457 - -0.2
6,569,483 + -0.3
6,569,484 - +0.3
6,569,501 - -0.1
6,569,576 + +0.3
6,569,576 + +0.1
6,569,577 - +0.2
6,569,577 - -0.7
6,569,577 - -0.3
6,569,577 - +0.6
6,569,578 + -0.2
6,569,578 + +1.5
6,569,579 - +0.6
6,569,579 - -1.0
6,569,579 - -1.4
6,569,579 - +0.5
6,569,579 - -0.7
6,569,579 - +0.1
6,569,579 - +1.7
6,569,579 - -0.1
6,569,579 - -0.2
6,569,579 - -0.6
6,569,605 + +0.5
6,569,606 - +0.0
6,569,609 + +0.3
6,569,609 + +1.0
6,569,609 + +1.1
6,569,610 - +0.9
6,569,610 - +0.7
6,569,610 - +0.9
6,569,610 - -0.7
6,569,613 + +0.3
6,569,613 + +0.5
6,569,613 + -2.0
6,569,613 + +1.5
6,569,613 + +0.3
6,569,614 - +0.4
6,569,614 - -3.2
6,569,614 - +0.8
6,569,614 - -1.1
6,569,614 - +0.7
6,569,614 - +0.3
6,569,614 - +0.8
6,569,614 - +0.9
6,569,700 - +1.4
6,569,755 + +0.4
6,569,862 + -0.6
6,569,862 + +0.3
6,569,863 - -0.1
6,569,863 - +0.4
6,569,866 - +0.4
6,569,922 + +0.7
6,569,938 - +0.6
6,570,089 + +0.4
6,570,089 + +1.8
6,570,090 - -1.1
6,570,090 - -1.4
6,570,090 - +0.4
6,570,090 - -0.3
6,570,090 - +0.6
6,570,090 - -0.6
6,570,090 - +0.5
6,570,090 - -0.1
6,570,198 + +0.5
6,570,198 + +2.3
6,570,198 + +0.8
6,570,198 + +1.1
6,570,198 + +1.9
6,570,199 - +1.0
6,570,199 - +0.8
6,570,199 - -0.2
6,570,199 - -1.1
6,570,199 - -1.2
6,570,199 - +0.7
6,570,199 - +0.5
6,570,199 - +1.2
6,570,199 - +0.8
6,570,216 + +1.0
6,570,216 + +1.9
6,570,217 - -0.1
6,570,446 + Pf6N2E2_5757 0.21 +0.1

Or see this region's nucleotide sequence