Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5754 and Pf6N2E2_5755 are separated by 144 nucleotides Pf6N2E2_5755 and Pf6N2E2_5756 are separated by 276 nucleotides Pf6N2E2_5756 and Pf6N2E2_5757 are separated by 953 nucleotides
Pf6N2E2_5754 - Long-chain fatty acid transport protein, at 6,567,051 to 6,568,325
_5754
Pf6N2E2_5755 - FIG00956435: hypothetical protein, at 6,568,470 to 6,568,952
_5755
Pf6N2E2_5756 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 6,569,229 to 6,569,453
_5756
Pf6N2E2_5757 - hypothetical protein, at 6,570,407 to 6,570,595
_5757
Position (kb)
6569
6570 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 6568.329 kb on + strand at 6568.329 kb on + strand at 6568.330 kb on - strand at 6568.361 kb on - strand at 6568.405 kb on - strand at 6568.716 kb on + strand, within Pf6N2E2_5755 at 6568.717 kb on - strand, within Pf6N2E2_5755 at 6568.750 kb on + strand, within Pf6N2E2_5755 at 6568.750 kb on + strand, within Pf6N2E2_5755 at 6568.751 kb on - strand, within Pf6N2E2_5755 at 6568.897 kb on + strand, within Pf6N2E2_5755 at 6568.921 kb on + strand at 6568.921 kb on + strand at 6568.921 kb on + strand at 6568.921 kb on + strand at 6568.921 kb on + strand at 6568.952 kb on + strand at 6568.952 kb on + strand at 6568.952 kb on + strand at 6569.068 kb on + strand at 6569.117 kb on + strand at 6569.117 kb on + strand at 6569.117 kb on + strand at 6569.124 kb on + strand at 6569.124 kb on + strand at 6569.125 kb on - strand at 6569.137 kb on - strand at 6569.253 kb on - strand, within Pf6N2E2_5756 at 6569.253 kb on - strand, within Pf6N2E2_5756 at 6569.291 kb on - strand, within Pf6N2E2_5756 at 6569.291 kb on - strand, within Pf6N2E2_5756 at 6569.423 kb on + strand, within Pf6N2E2_5756 at 6569.457 kb on - strand at 6569.483 kb on + strand at 6569.484 kb on - strand at 6569.501 kb on - strand at 6569.576 kb on + strand at 6569.576 kb on + strand at 6569.577 kb on - strand at 6569.577 kb on - strand at 6569.577 kb on - strand at 6569.577 kb on - strand at 6569.578 kb on + strand at 6569.578 kb on + strand at 6569.579 kb on - strand at 6569.579 kb on - strand at 6569.579 kb on - strand at 6569.579 kb on - strand at 6569.579 kb on - strand at 6569.579 kb on - strand at 6569.579 kb on - strand at 6569.579 kb on - strand at 6569.579 kb on - strand at 6569.579 kb on - strand at 6569.605 kb on + strand at 6569.606 kb on - strand at 6569.609 kb on + strand at 6569.609 kb on + strand at 6569.609 kb on + strand at 6569.610 kb on - strand at 6569.610 kb on - strand at 6569.610 kb on - strand at 6569.610 kb on - strand at 6569.613 kb on + strand at 6569.613 kb on + strand at 6569.613 kb on + strand at 6569.613 kb on + strand at 6569.613 kb on + strand at 6569.614 kb on - strand at 6569.614 kb on - strand at 6569.614 kb on - strand at 6569.614 kb on - strand at 6569.614 kb on - strand at 6569.614 kb on - strand at 6569.614 kb on - strand at 6569.614 kb on - strand at 6569.700 kb on - strand at 6569.755 kb on + strand at 6569.862 kb on + strand at 6569.862 kb on + strand at 6569.863 kb on - strand at 6569.863 kb on - strand at 6569.866 kb on - strand at 6569.922 kb on + strand at 6569.938 kb on - strand at 6570.089 kb on + strand at 6570.089 kb on + strand at 6570.090 kb on - strand at 6570.090 kb on - strand at 6570.090 kb on - strand at 6570.090 kb on - strand at 6570.090 kb on - strand at 6570.090 kb on - strand at 6570.090 kb on - strand at 6570.090 kb on - strand at 6570.198 kb on + strand at 6570.198 kb on + strand at 6570.198 kb on + strand at 6570.198 kb on + strand at 6570.198 kb on + strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.216 kb on + strand at 6570.216 kb on + strand at 6570.217 kb on - strand at 6570.446 kb on + strand, within Pf6N2E2_5757
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 6,568,329 + -0.2 6,568,329 + -0.5 6,568,330 - -0.6 6,568,361 - +0.1 6,568,405 - -2.0 6,568,716 + Pf6N2E2_5755 0.51 +0.3 6,568,717 - Pf6N2E2_5755 0.51 -0.4 6,568,750 + Pf6N2E2_5755 0.58 -0.3 6,568,750 + Pf6N2E2_5755 0.58 -0.3 6,568,751 - Pf6N2E2_5755 0.58 +0.1 6,568,897 + Pf6N2E2_5755 0.88 +1.0 6,568,921 + +1.3 6,568,921 + -0.3 6,568,921 + +1.5 6,568,921 + +1.2 6,568,921 + +0.1 6,568,952 + -0.1 6,568,952 + -0.5 6,568,952 + +0.6 6,569,068 + -0.7 6,569,117 + -1.8 6,569,117 + +0.3 6,569,117 + +0.6 6,569,124 + +1.3 6,569,124 + -0.4 6,569,125 - -0.2 6,569,137 - -0.6 6,569,253 - Pf6N2E2_5756 0.11 -2.7 6,569,253 - Pf6N2E2_5756 0.11 +0.0 6,569,291 - Pf6N2E2_5756 0.28 -0.6 6,569,291 - Pf6N2E2_5756 0.28 -1.7 6,569,423 + Pf6N2E2_5756 0.86 -1.3 6,569,457 - -0.2 6,569,483 + -0.3 6,569,484 - +0.3 6,569,501 - -0.1 6,569,576 + +0.3 6,569,576 + +0.1 6,569,577 - +0.2 6,569,577 - -0.7 6,569,577 - -0.3 6,569,577 - +0.6 6,569,578 + -0.2 6,569,578 + +1.5 6,569,579 - +0.6 6,569,579 - -1.0 6,569,579 - -1.4 6,569,579 - +0.5 6,569,579 - -0.7 6,569,579 - +0.1 6,569,579 - +1.7 6,569,579 - -0.1 6,569,579 - -0.2 6,569,579 - -0.6 6,569,605 + +0.5 6,569,606 - +0.0 6,569,609 + +0.3 6,569,609 + +1.0 6,569,609 + +1.1 6,569,610 - +0.9 6,569,610 - +0.7 6,569,610 - +0.9 6,569,610 - -0.7 6,569,613 + +0.3 6,569,613 + +0.5 6,569,613 + -2.0 6,569,613 + +1.5 6,569,613 + +0.3 6,569,614 - +0.4 6,569,614 - -3.2 6,569,614 - +0.8 6,569,614 - -1.1 6,569,614 - +0.7 6,569,614 - +0.3 6,569,614 - +0.8 6,569,614 - +0.9 6,569,700 - +1.4 6,569,755 + +0.4 6,569,862 + -0.6 6,569,862 + +0.3 6,569,863 - -0.1 6,569,863 - +0.4 6,569,866 - +0.4 6,569,922 + +0.7 6,569,938 - +0.6 6,570,089 + +0.4 6,570,089 + +1.8 6,570,090 - -1.1 6,570,090 - -1.4 6,570,090 - +0.4 6,570,090 - -0.3 6,570,090 - +0.6 6,570,090 - -0.6 6,570,090 - +0.5 6,570,090 - -0.1 6,570,198 + +0.5 6,570,198 + +2.3 6,570,198 + +0.8 6,570,198 + +1.1 6,570,198 + +1.9 6,570,199 - +1.0 6,570,199 - +0.8 6,570,199 - -0.2 6,570,199 - -1.1 6,570,199 - -1.2 6,570,199 - +0.7 6,570,199 - +0.5 6,570,199 - +1.2 6,570,199 - +0.8 6,570,216 + +1.0 6,570,216 + +1.9 6,570,217 - -0.1 6,570,446 + Pf6N2E2_5757 0.21 +0.1
Or see this region's nucleotide sequence