Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5365

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5364 and Pf6N2E2_5365 are separated by 230 nucleotidesPf6N2E2_5365 and Pf6N2E2_5366 overlap by 14 nucleotidesPf6N2E2_5366 and Pf6N2E2_5367 are separated by 9 nucleotides Pf6N2E2_5364 - GGDEF domain protein, at 6,161,502 to 6,162,995 _5364 Pf6N2E2_5365 - Heavy metal sensor histidine kinase, at 6,163,226 to 6,164,593 _5365 Pf6N2E2_5366 - DNA-binding heavy metal response regulator, at 6,164,580 to 6,165,263 _5366 Pf6N2E2_5367 - Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA, at 6,165,273 to 6,168,389 _5367 Position (kb) 6163 6164 6165Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 6162.249 kb on - strand, within Pf6N2E2_5364at 6162.267 kb on + strand, within Pf6N2E2_5364at 6162.267 kb on + strand, within Pf6N2E2_5364at 6162.267 kb on + strand, within Pf6N2E2_5364at 6162.409 kb on + strand, within Pf6N2E2_5364at 6162.409 kb on + strand, within Pf6N2E2_5364at 6162.410 kb on - strand, within Pf6N2E2_5364at 6162.410 kb on - strand, within Pf6N2E2_5364at 6162.410 kb on - strand, within Pf6N2E2_5364at 6162.473 kb on - strand, within Pf6N2E2_5364at 6162.586 kb on + strand, within Pf6N2E2_5364at 6162.586 kb on + strand, within Pf6N2E2_5364at 6162.586 kb on + strand, within Pf6N2E2_5364at 6162.586 kb on + strand, within Pf6N2E2_5364at 6162.587 kb on - strand, within Pf6N2E2_5364at 6162.587 kb on - strand, within Pf6N2E2_5364at 6162.587 kb on - strand, within Pf6N2E2_5364at 6162.627 kb on + strand, within Pf6N2E2_5364at 6162.627 kb on + strand, within Pf6N2E2_5364at 6162.628 kb on - strand, within Pf6N2E2_5364at 6162.628 kb on - strand, within Pf6N2E2_5364at 6162.667 kb on + strand, within Pf6N2E2_5364at 6162.667 kb on + strand, within Pf6N2E2_5364at 6162.778 kb on + strand, within Pf6N2E2_5364at 6162.778 kb on + strand, within Pf6N2E2_5364at 6162.936 kb on + strandat 6163.127 kb on - strandat 6163.127 kb on - strandat 6163.506 kb on - strand, within Pf6N2E2_5365at 6163.776 kb on + strand, within Pf6N2E2_5365at 6163.776 kb on + strand, within Pf6N2E2_5365at 6163.776 kb on + strand, within Pf6N2E2_5365at 6163.776 kb on + strand, within Pf6N2E2_5365at 6163.776 kb on + strand, within Pf6N2E2_5365at 6163.776 kb on + strand, within Pf6N2E2_5365at 6163.777 kb on - strand, within Pf6N2E2_5365at 6163.777 kb on - strand, within Pf6N2E2_5365at 6163.890 kb on + strand, within Pf6N2E2_5365at 6163.890 kb on + strand, within Pf6N2E2_5365at 6163.890 kb on + strand, within Pf6N2E2_5365at 6164.213 kb on + strand, within Pf6N2E2_5365at 6164.446 kb on - strand, within Pf6N2E2_5365at 6164.446 kb on - strand, within Pf6N2E2_5365at 6164.502 kb on + strandat 6164.503 kb on - strandat 6164.503 kb on - strandat 6164.505 kb on - strandat 6164.505 kb on - strandat 6164.505 kb on - strandat 6164.505 kb on - strandat 6164.614 kb on + strandat 6164.615 kb on - strandat 6164.615 kb on - strandat 6164.615 kb on - strandat 6164.974 kb on + strand, within Pf6N2E2_5366at 6164.974 kb on + strand, within Pf6N2E2_5366at 6164.975 kb on - strand, within Pf6N2E2_5366at 6164.975 kb on - strand, within Pf6N2E2_5366at 6164.975 kb on - strand, within Pf6N2E2_5366at 6164.975 kb on - strand, within Pf6N2E2_5366at 6165.078 kb on + strand, within Pf6N2E2_5366at 6165.079 kb on - strand, within Pf6N2E2_5366at 6165.131 kb on - strand, within Pf6N2E2_5366at 6165.189 kb on - strand, within Pf6N2E2_5366at 6165.190 kb on + strand, within Pf6N2E2_5366at 6165.190 kb on + strand, within Pf6N2E2_5366at 6165.190 kb on + strand, within Pf6N2E2_5366at 6165.220 kb on + strandat 6165.221 kb on - strandat 6165.221 kb on - strandat 6165.358 kb on + strandat 6165.358 kb on + strandat 6165.358 kb on + strandat 6165.358 kb on + strandat 6165.358 kb on + strandat 6165.358 kb on + strandat 6165.358 kb on + strandat 6165.358 kb on + strandat 6165.358 kb on + strandat 6165.358 kb on + strandat 6165.358 kb on + strandat 6165.358 kb on + strandat 6165.358 kb on + strandat 6165.358 kb on + strandat 6165.358 kb on + strandat 6165.358 kb on + strandat 6165.358 kb on + strandat 6165.359 kb on - strandat 6165.359 kb on - strandat 6165.359 kb on - strandat 6165.359 kb on - strandat 6165.359 kb on - strandat 6165.359 kb on - strandat 6165.359 kb on - strandat 6165.359 kb on - strandat 6165.359 kb on - strandat 6165.359 kb on - strandat 6165.359 kb on - strandat 6165.359 kb on - strandat 6165.359 kb on - strandat 6165.359 kb on - strandat 6165.359 kb on - strandat 6165.359 kb on - strandat 6165.359 kb on - strandat 6165.359 kb on - strandat 6165.360 kb on + strandat 6165.360 kb on + strandat 6165.360 kb on + strandat 6165.361 kb on - strandat 6165.361 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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6,162,249 - Pf6N2E2_5364 0.50 -1.1
6,162,267 + Pf6N2E2_5364 0.51 -0.0
6,162,267 + Pf6N2E2_5364 0.51 +0.4
6,162,267 + Pf6N2E2_5364 0.51 -0.6
6,162,409 + Pf6N2E2_5364 0.61 +1.7
6,162,409 + Pf6N2E2_5364 0.61 -0.3
6,162,410 - Pf6N2E2_5364 0.61 +0.3
6,162,410 - Pf6N2E2_5364 0.61 -0.2
6,162,410 - Pf6N2E2_5364 0.61 -1.2
6,162,473 - Pf6N2E2_5364 0.65 +0.8
6,162,586 + Pf6N2E2_5364 0.73 -0.1
6,162,586 + Pf6N2E2_5364 0.73 +0.1
6,162,586 + Pf6N2E2_5364 0.73 +0.7
6,162,586 + Pf6N2E2_5364 0.73 -0.2
6,162,587 - Pf6N2E2_5364 0.73 -1.0
6,162,587 - Pf6N2E2_5364 0.73 -0.8
6,162,587 - Pf6N2E2_5364 0.73 -0.1
6,162,627 + Pf6N2E2_5364 0.75 +0.6
6,162,627 + Pf6N2E2_5364 0.75 +0.1
6,162,628 - Pf6N2E2_5364 0.75 +0.2
6,162,628 - Pf6N2E2_5364 0.75 +0.3
6,162,667 + Pf6N2E2_5364 0.78 -0.4
6,162,667 + Pf6N2E2_5364 0.78 +0.2
6,162,778 + Pf6N2E2_5364 0.85 -0.3
6,162,778 + Pf6N2E2_5364 0.85 -0.0
6,162,936 + +1.9
6,163,127 - -0.3
6,163,127 - -1.4
6,163,506 - Pf6N2E2_5365 0.20 +4.2
6,163,776 + Pf6N2E2_5365 0.40 +3.8
6,163,776 + Pf6N2E2_5365 0.40 +4.1
6,163,776 + Pf6N2E2_5365 0.40 +4.0
6,163,776 + Pf6N2E2_5365 0.40 +3.8
6,163,776 + Pf6N2E2_5365 0.40 +2.8
6,163,776 + Pf6N2E2_5365 0.40 +3.9
6,163,777 - Pf6N2E2_5365 0.40 +3.4
6,163,777 - Pf6N2E2_5365 0.40 +3.3
6,163,890 + Pf6N2E2_5365 0.49 +3.5
6,163,890 + Pf6N2E2_5365 0.49 +3.6
6,163,890 + Pf6N2E2_5365 0.49 +0.9
6,164,213 + Pf6N2E2_5365 0.72 +3.3
6,164,446 - Pf6N2E2_5365 0.89 +4.0
6,164,446 - Pf6N2E2_5365 0.89 +3.2
6,164,502 + +2.7
6,164,503 - +3.8
6,164,503 - +2.7
6,164,505 - +3.5
6,164,505 - +3.8
6,164,505 - +3.3
6,164,505 - +3.9
6,164,614 + -0.0
6,164,615 - +0.1
6,164,615 - -0.1
6,164,615 - +0.4
6,164,974 + Pf6N2E2_5366 0.58 -0.5
6,164,974 + Pf6N2E2_5366 0.58 +1.0
6,164,975 - Pf6N2E2_5366 0.58 -0.2
6,164,975 - Pf6N2E2_5366 0.58 -1.0
6,164,975 - Pf6N2E2_5366 0.58 +0.8
6,164,975 - Pf6N2E2_5366 0.58 +0.6
6,165,078 + Pf6N2E2_5366 0.73 +1.9
6,165,079 - Pf6N2E2_5366 0.73 +0.2
6,165,131 - Pf6N2E2_5366 0.81 -0.1
6,165,189 - Pf6N2E2_5366 0.89 -2.3
6,165,190 + Pf6N2E2_5366 0.89 -0.5
6,165,190 + Pf6N2E2_5366 0.89 +0.5
6,165,190 + Pf6N2E2_5366 0.89 +0.5
6,165,220 + -0.4
6,165,221 - +0.8
6,165,221 - +0.5
6,165,358 + +0.4
6,165,358 + -0.5
6,165,358 + -0.5
6,165,358 + -1.2
6,165,358 + +0.7
6,165,358 + -3.3
6,165,358 + +0.6
6,165,358 + -0.7
6,165,358 + +0.7
6,165,358 + +0.9
6,165,358 + +0.3
6,165,358 + +0.7
6,165,358 + +0.6
6,165,358 + -0.2
6,165,358 + -0.3
6,165,358 + -0.1
6,165,358 + -1.0
6,165,359 - -0.3
6,165,359 - -0.9
6,165,359 - -0.3
6,165,359 - -1.9
6,165,359 - -0.7
6,165,359 - -0.2
6,165,359 - -0.6
6,165,359 - -0.2
6,165,359 - +0.2
6,165,359 - +0.2
6,165,359 - +0.5
6,165,359 - +0.4
6,165,359 - -1.1
6,165,359 - -1.0
6,165,359 - -0.2
6,165,359 - +0.2
6,165,359 - -0.1
6,165,359 - -0.2
6,165,360 + +0.9
6,165,360 + +0.7
6,165,360 + -0.2
6,165,361 - -0.2
6,165,361 - -0.2

Or see this region's nucleotide sequence