Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4707 and Pf6N2E2_4708 are separated by 888 nucleotides Pf6N2E2_4708 and Pf6N2E2_4709 overlap by 42 nucleotides
Pf6N2E2_4707 - acetyltransferase, GNAT family, at 5,440,344 to 5,440,910
_4707
Pf6N2E2_4708 - hypothetical protein, at 5,441,799 to 5,442,002
_4708
Pf6N2E2_4709 - Cholesterol oxidase (EC 1.1.3.6), at 5,441,961 to 5,445,413
_4709
Position (kb) 5441
5442
5443 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5440.812 kb on + strand, within Pf6N2E2_4707 at 5440.812 kb on + strand, within Pf6N2E2_4707 at 5440.813 kb on - strand, within Pf6N2E2_4707 at 5440.891 kb on - strand at 5440.891 kb on - strand at 5440.891 kb on - strand at 5440.963 kb on + strand at 5440.963 kb on + strand at 5440.963 kb on + strand at 5440.964 kb on - strand at 5440.964 kb on - strand at 5440.964 kb on - strand at 5440.964 kb on - strand at 5440.968 kb on - strand at 5441.126 kb on + strand at 5441.226 kb on - strand at 5441.226 kb on - strand at 5441.279 kb on - strand at 5441.392 kb on - strand at 5441.392 kb on - strand at 5441.428 kb on - strand at 5441.491 kb on + strand at 5441.491 kb on + strand at 5441.492 kb on - strand at 5441.498 kb on - strand at 5441.498 kb on - strand at 5441.498 kb on - strand at 5441.498 kb on - strand at 5441.498 kb on - strand at 5441.498 kb on - strand at 5441.599 kb on - strand at 5441.606 kb on + strand at 5441.607 kb on - strand at 5441.607 kb on - strand at 5441.614 kb on - strand at 5441.673 kb on - strand at 5441.673 kb on - strand at 5441.673 kb on - strand at 5441.726 kb on + strand at 5441.727 kb on - strand at 5441.727 kb on - strand at 5441.819 kb on + strand at 5441.819 kb on + strand at 5441.820 kb on - strand, within Pf6N2E2_4708 at 5441.820 kb on - strand, within Pf6N2E2_4708 at 5441.851 kb on - strand, within Pf6N2E2_4708 at 5442.003 kb on + strand at 5442.004 kb on - strand at 5442.487 kb on - strand, within Pf6N2E2_4709 at 5442.593 kb on + strand, within Pf6N2E2_4709 at 5442.594 kb on - strand, within Pf6N2E2_4709 at 5442.627 kb on + strand, within Pf6N2E2_4709 at 5442.627 kb on + strand, within Pf6N2E2_4709 at 5442.628 kb on - strand, within Pf6N2E2_4709 at 5442.628 kb on - strand, within Pf6N2E2_4709 at 5442.628 kb on - strand, within Pf6N2E2_4709 at 5442.628 kb on - strand, within Pf6N2E2_4709 at 5442.628 kb on - strand, within Pf6N2E2_4709 at 5442.628 kb on - strand, within Pf6N2E2_4709 at 5442.628 kb on - strand, within Pf6N2E2_4709 at 5442.727 kb on - strand, within Pf6N2E2_4709
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 5,440,812 + Pf6N2E2_4707 0.83 -2.0 5,440,812 + Pf6N2E2_4707 0.83 -0.5 5,440,813 - Pf6N2E2_4707 0.83 -0.6 5,440,891 - +0.2 5,440,891 - +0.4 5,440,891 - +0.6 5,440,963 + -0.7 5,440,963 + +0.2 5,440,963 + +0.9 5,440,964 - -0.6 5,440,964 - +0.5 5,440,964 - -0.3 5,440,964 - -0.1 5,440,968 - +0.1 5,441,126 + +1.9 5,441,226 - +0.5 5,441,226 - +0.3 5,441,279 - +0.5 5,441,392 - -1.1 5,441,392 - +0.5 5,441,428 - +0.3 5,441,491 + -2.3 5,441,491 + -0.1 5,441,492 - -1.8 5,441,498 - -0.8 5,441,498 - +0.6 5,441,498 - -1.4 5,441,498 - +0.9 5,441,498 - +0.8 5,441,498 - +0.1 5,441,599 - -1.0 5,441,606 + +0.2 5,441,607 - +0.9 5,441,607 - +1.1 5,441,614 - +0.4 5,441,673 - +0.3 5,441,673 - -0.2 5,441,673 - +0.2 5,441,726 + +0.5 5,441,727 - +1.0 5,441,727 - -1.6 5,441,819 + +0.7 5,441,819 + +1.1 5,441,820 - Pf6N2E2_4708 0.10 -1.6 5,441,820 - Pf6N2E2_4708 0.10 -0.3 5,441,851 - Pf6N2E2_4708 0.25 -1.8 5,442,003 + +0.6 5,442,004 - -0.2 5,442,487 - Pf6N2E2_4709 0.15 +0.5 5,442,593 + Pf6N2E2_4709 0.18 -1.0 5,442,594 - Pf6N2E2_4709 0.18 +1.0 5,442,627 + Pf6N2E2_4709 0.19 +0.8 5,442,627 + Pf6N2E2_4709 0.19 +0.1 5,442,628 - Pf6N2E2_4709 0.19 +0.7 5,442,628 - Pf6N2E2_4709 0.19 -0.3 5,442,628 - Pf6N2E2_4709 0.19 +0.2 5,442,628 - Pf6N2E2_4709 0.19 +1.7 5,442,628 - Pf6N2E2_4709 0.19 -0.1 5,442,628 - Pf6N2E2_4709 0.19 -0.1 5,442,628 - Pf6N2E2_4709 0.19 +0.5 5,442,727 - Pf6N2E2_4709 0.22 +0.5
Or see this region's nucleotide sequence