Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4596

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4594 and Pf6N2E2_4595 overlap by 4 nucleotidesPf6N2E2_4595 and Pf6N2E2_4596 are separated by 25 nucleotidesPf6N2E2_4596 and Pf6N2E2_4597 are separated by 7 nucleotides Pf6N2E2_4594 - Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15), at 5,322,313 to 5,322,909 _4594 Pf6N2E2_4595 - FIG003551: hypothetical protein, at 5,322,906 to 5,323,340 _4595 Pf6N2E2_4596 - Homoserine O-acetyltransferase (EC 2.3.1.31), at 5,323,366 to 5,323,986 _4596 Pf6N2E2_4597 - Homoserine O-acetyltransferase (EC 2.3.1.31), at 5,323,994 to 5,325,085 _4597 Position (kb) 5323 5324Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5322.653 kb on + strand, within Pf6N2E2_4594at 5322.654 kb on - strand, within Pf6N2E2_4594at 5322.654 kb on - strand, within Pf6N2E2_4594at 5322.654 kb on - strand, within Pf6N2E2_4594at 5322.820 kb on + strand, within Pf6N2E2_4594at 5322.886 kb on + strandat 5322.887 kb on - strandat 5323.021 kb on + strand, within Pf6N2E2_4595at 5323.021 kb on + strand, within Pf6N2E2_4595at 5323.021 kb on + strand, within Pf6N2E2_4595at 5323.021 kb on + strand, within Pf6N2E2_4595at 5323.021 kb on + strand, within Pf6N2E2_4595at 5323.021 kb on + strand, within Pf6N2E2_4595at 5323.022 kb on - strand, within Pf6N2E2_4595at 5323.022 kb on - strand, within Pf6N2E2_4595at 5323.022 kb on - strand, within Pf6N2E2_4595at 5323.022 kb on - strand, within Pf6N2E2_4595at 5323.024 kb on + strand, within Pf6N2E2_4595at 5323.025 kb on - strand, within Pf6N2E2_4595at 5323.025 kb on - strand, within Pf6N2E2_4595at 5323.025 kb on - strand, within Pf6N2E2_4595at 5323.025 kb on - strand, within Pf6N2E2_4595at 5323.228 kb on + strand, within Pf6N2E2_4595at 5323.228 kb on + strand, within Pf6N2E2_4595at 5323.228 kb on + strand, within Pf6N2E2_4595at 5323.228 kb on + strand, within Pf6N2E2_4595at 5323.228 kb on + strand, within Pf6N2E2_4595at 5323.228 kb on + strand, within Pf6N2E2_4595at 5323.229 kb on - strand, within Pf6N2E2_4595at 5323.229 kb on - strand, within Pf6N2E2_4595at 5323.229 kb on - strand, within Pf6N2E2_4595at 5323.229 kb on - strand, within Pf6N2E2_4595at 5323.242 kb on - strand, within Pf6N2E2_4595at 5323.382 kb on + strandat 5323.383 kb on - strandat 5323.390 kb on - strandat 5323.413 kb on - strandat 5323.420 kb on + strandat 5323.420 kb on + strandat 5323.420 kb on + strandat 5323.429 kb on + strand, within Pf6N2E2_4596at 5323.437 kb on + strand, within Pf6N2E2_4596at 5323.438 kb on - strand, within Pf6N2E2_4596at 5323.444 kb on + strand, within Pf6N2E2_4596at 5323.444 kb on + strand, within Pf6N2E2_4596at 5323.444 kb on + strand, within Pf6N2E2_4596at 5323.444 kb on + strand, within Pf6N2E2_4596at 5323.444 kb on + strand, within Pf6N2E2_4596at 5323.444 kb on + strand, within Pf6N2E2_4596at 5323.445 kb on - strand, within Pf6N2E2_4596at 5323.445 kb on - strand, within Pf6N2E2_4596at 5323.445 kb on - strand, within Pf6N2E2_4596at 5323.445 kb on - strand, within Pf6N2E2_4596at 5323.445 kb on - strand, within Pf6N2E2_4596at 5323.445 kb on - strand, within Pf6N2E2_4596at 5323.445 kb on - strand, within Pf6N2E2_4596at 5323.571 kb on + strand, within Pf6N2E2_4596at 5323.571 kb on + strand, within Pf6N2E2_4596at 5323.571 kb on + strand, within Pf6N2E2_4596at 5323.571 kb on + strand, within Pf6N2E2_4596at 5323.571 kb on + strand, within Pf6N2E2_4596at 5323.571 kb on + strand, within Pf6N2E2_4596at 5323.571 kb on + strand, within Pf6N2E2_4596at 5323.572 kb on - strand, within Pf6N2E2_4596at 5323.580 kb on + strand, within Pf6N2E2_4596at 5323.581 kb on - strand, within Pf6N2E2_4596at 5323.625 kb on + strand, within Pf6N2E2_4596at 5323.626 kb on - strand, within Pf6N2E2_4596at 5324.004 kb on - strandat 5324.005 kb on + strandat 5324.005 kb on + strandat 5324.005 kb on + strandat 5324.005 kb on + strandat 5324.005 kb on + strandat 5324.005 kb on + strandat 5324.006 kb on - strandat 5324.006 kb on - strandat 5324.006 kb on - strandat 5324.016 kb on + strandat 5324.016 kb on + strandat 5324.016 kb on + strandat 5324.016 kb on + strandat 5324.017 kb on - strandat 5324.017 kb on - strandat 5324.017 kb on - strandat 5324.257 kb on - strand, within Pf6N2E2_4597at 5324.283 kb on + strand, within Pf6N2E2_4597at 5324.283 kb on + strand, within Pf6N2E2_4597at 5324.283 kb on + strand, within Pf6N2E2_4597at 5324.283 kb on + strand, within Pf6N2E2_4597at 5324.283 kb on + strand, within Pf6N2E2_4597at 5324.283 kb on + strand, within Pf6N2E2_4597at 5324.284 kb on - strand, within Pf6N2E2_4597at 5324.284 kb on - strand, within Pf6N2E2_4597at 5324.284 kb on - strand, within Pf6N2E2_4597at 5324.284 kb on - strand, within Pf6N2E2_4597at 5324.335 kb on - strand, within Pf6N2E2_4597at 5324.370 kb on + strand, within Pf6N2E2_4597at 5324.370 kb on + strand, within Pf6N2E2_4597at 5324.370 kb on + strand, within Pf6N2E2_4597at 5324.371 kb on - strand, within Pf6N2E2_4597at 5324.371 kb on - strand, within Pf6N2E2_4597at 5324.433 kb on + strand, within Pf6N2E2_4597at 5324.433 kb on + strand, within Pf6N2E2_4597at 5324.433 kb on + strand, within Pf6N2E2_4597at 5324.434 kb on - strand, within Pf6N2E2_4597at 5324.434 kb on - strand, within Pf6N2E2_4597at 5324.434 kb on - strand, within Pf6N2E2_4597

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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5,322,653 + Pf6N2E2_4594 0.57 -0.3
5,322,654 - Pf6N2E2_4594 0.57 -1.4
5,322,654 - Pf6N2E2_4594 0.57 +0.2
5,322,654 - Pf6N2E2_4594 0.57 +1.2
5,322,820 + Pf6N2E2_4594 0.85 -1.4
5,322,886 + +1.3
5,322,887 - -0.4
5,323,021 + Pf6N2E2_4595 0.26 +0.4
5,323,021 + Pf6N2E2_4595 0.26 +1.0
5,323,021 + Pf6N2E2_4595 0.26 -0.1
5,323,021 + Pf6N2E2_4595 0.26 +0.1
5,323,021 + Pf6N2E2_4595 0.26 -1.9
5,323,021 + Pf6N2E2_4595 0.26 -0.6
5,323,022 - Pf6N2E2_4595 0.27 -0.4
5,323,022 - Pf6N2E2_4595 0.27 +0.4
5,323,022 - Pf6N2E2_4595 0.27 -0.6
5,323,022 - Pf6N2E2_4595 0.27 -0.4
5,323,024 + Pf6N2E2_4595 0.27 +0.4
5,323,025 - Pf6N2E2_4595 0.27 +0.2
5,323,025 - Pf6N2E2_4595 0.27 +1.2
5,323,025 - Pf6N2E2_4595 0.27 +0.5
5,323,025 - Pf6N2E2_4595 0.27 +1.1
5,323,228 + Pf6N2E2_4595 0.74 +0.3
5,323,228 + Pf6N2E2_4595 0.74 -0.0
5,323,228 + Pf6N2E2_4595 0.74 -0.4
5,323,228 + Pf6N2E2_4595 0.74 +0.3
5,323,228 + Pf6N2E2_4595 0.74 +0.8
5,323,228 + Pf6N2E2_4595 0.74 +1.7
5,323,229 - Pf6N2E2_4595 0.74 +0.6
5,323,229 - Pf6N2E2_4595 0.74 +1.0
5,323,229 - Pf6N2E2_4595 0.74 +1.1
5,323,229 - Pf6N2E2_4595 0.74 +0.1
5,323,242 - Pf6N2E2_4595 0.77 +2.6
5,323,382 + -0.0
5,323,383 - +0.1
5,323,390 - -1.1
5,323,413 - -2.6
5,323,420 + -3.9
5,323,420 + -2.6
5,323,420 + -3.6
5,323,429 + Pf6N2E2_4596 0.10 -3.3
5,323,437 + Pf6N2E2_4596 0.11 -2.7
5,323,438 - Pf6N2E2_4596 0.12 -1.6
5,323,444 + Pf6N2E2_4596 0.13 -3.9
5,323,444 + Pf6N2E2_4596 0.13 -2.3
5,323,444 + Pf6N2E2_4596 0.13 -2.1
5,323,444 + Pf6N2E2_4596 0.13 -3.7
5,323,444 + Pf6N2E2_4596 0.13 -3.3
5,323,444 + Pf6N2E2_4596 0.13 -3.4
5,323,445 - Pf6N2E2_4596 0.13 -3.2
5,323,445 - Pf6N2E2_4596 0.13 -3.6
5,323,445 - Pf6N2E2_4596 0.13 -3.6
5,323,445 - Pf6N2E2_4596 0.13 -3.8
5,323,445 - Pf6N2E2_4596 0.13 -3.4
5,323,445 - Pf6N2E2_4596 0.13 -2.8
5,323,445 - Pf6N2E2_4596 0.13 -4.0
5,323,571 + Pf6N2E2_4596 0.33 -1.5
5,323,571 + Pf6N2E2_4596 0.33 -3.6
5,323,571 + Pf6N2E2_4596 0.33 -1.7
5,323,571 + Pf6N2E2_4596 0.33 -3.3
5,323,571 + Pf6N2E2_4596 0.33 -3.7
5,323,571 + Pf6N2E2_4596 0.33 -2.1
5,323,571 + Pf6N2E2_4596 0.33 -2.7
5,323,572 - Pf6N2E2_4596 0.33 -3.7
5,323,580 + Pf6N2E2_4596 0.34 -3.3
5,323,581 - Pf6N2E2_4596 0.35 -3.3
5,323,625 + Pf6N2E2_4596 0.42 -1.0
5,323,626 - Pf6N2E2_4596 0.42 -3.0
5,324,004 - +0.2
5,324,005 + -2.7
5,324,005 + -2.5
5,324,005 + -3.0
5,324,005 + -3.8
5,324,005 + -2.2
5,324,005 + -2.7
5,324,006 - -3.0
5,324,006 - -3.3
5,324,006 - -2.7
5,324,016 + -3.1
5,324,016 + -3.4
5,324,016 + -1.1
5,324,016 + -3.3
5,324,017 - -3.5
5,324,017 - -1.8
5,324,017 - -3.1
5,324,257 - Pf6N2E2_4597 0.24 -3.1
5,324,283 + Pf6N2E2_4597 0.26 -3.2
5,324,283 + Pf6N2E2_4597 0.26 -4.2
5,324,283 + Pf6N2E2_4597 0.26 -4.5
5,324,283 + Pf6N2E2_4597 0.26 -1.6
5,324,283 + Pf6N2E2_4597 0.26 -3.3
5,324,283 + Pf6N2E2_4597 0.26 -1.8
5,324,284 - Pf6N2E2_4597 0.27 -3.1
5,324,284 - Pf6N2E2_4597 0.27 -3.7
5,324,284 - Pf6N2E2_4597 0.27 -2.9
5,324,284 - Pf6N2E2_4597 0.27 -4.4
5,324,335 - Pf6N2E2_4597 0.31 -2.7
5,324,370 + Pf6N2E2_4597 0.34 -3.2
5,324,370 + Pf6N2E2_4597 0.34 -2.7
5,324,370 + Pf6N2E2_4597 0.34 -2.7
5,324,371 - Pf6N2E2_4597 0.35 -3.3
5,324,371 - Pf6N2E2_4597 0.35 -2.2
5,324,433 + Pf6N2E2_4597 0.40 -4.1
5,324,433 + Pf6N2E2_4597 0.40 -3.3
5,324,433 + Pf6N2E2_4597 0.40 -3.5
5,324,434 - Pf6N2E2_4597 0.40 -3.6
5,324,434 - Pf6N2E2_4597 0.40 -3.4
5,324,434 - Pf6N2E2_4597 0.40 -3.2

Or see this region's nucleotide sequence