Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_425

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_424 and Pf6N2E2_425 are separated by 217 nucleotidesPf6N2E2_425 and Pf6N2E2_426 are separated by 4 nucleotidesPf6N2E2_426 and Pf6N2E2_427 are separated by 161 nucleotidesPf6N2E2_427 and Pf6N2E2_428 are separated by 125 nucleotides Pf6N2E2_424 - Decarboxylase family protein, at 492,718 to 494,091 _424 Pf6N2E2_425 - FIG00957304: hypothetical protein, at 494,309 to 494,842 _425 Pf6N2E2_426 - Arsenate reductase (EC 1.20.4.1), at 494,847 to 495,302 _426 Pf6N2E2_427 - Conidiation-specific protein 10, at 495,464 to 495,643 _427 Pf6N2E2_428 - Protease subunit of ATP-dependent Clp proteases, at 495,769 to 496,332 _428 Position (kb) 494 495Strain fitness (log2 ratio) -2 -1 0 1 2at 493.348 kb on + strand, within Pf6N2E2_424at 493.348 kb on + strand, within Pf6N2E2_424at 493.349 kb on - strand, within Pf6N2E2_424at 493.470 kb on + strand, within Pf6N2E2_424at 493.471 kb on - strand, within Pf6N2E2_424at 493.545 kb on + strand, within Pf6N2E2_424at 493.546 kb on - strand, within Pf6N2E2_424at 493.589 kb on + strand, within Pf6N2E2_424at 493.590 kb on - strand, within Pf6N2E2_424at 493.590 kb on - strand, within Pf6N2E2_424at 493.590 kb on - strand, within Pf6N2E2_424at 493.595 kb on + strand, within Pf6N2E2_424at 493.595 kb on + strand, within Pf6N2E2_424at 493.595 kb on + strand, within Pf6N2E2_424at 493.694 kb on + strand, within Pf6N2E2_424at 493.695 kb on - strand, within Pf6N2E2_424at 493.695 kb on - strand, within Pf6N2E2_424at 493.901 kb on + strand, within Pf6N2E2_424at 493.902 kb on - strand, within Pf6N2E2_424at 493.982 kb on + strandat 493.982 kb on + strandat 493.982 kb on + strandat 493.982 kb on + strandat 493.982 kb on + strandat 493.982 kb on + strandat 493.982 kb on + strandat 493.982 kb on + strandat 493.982 kb on + strandat 493.983 kb on - strandat 493.983 kb on - strandat 493.986 kb on + strandat 494.074 kb on + strandat 494.074 kb on + strandat 494.074 kb on + strandat 494.074 kb on + strandat 494.074 kb on + strandat 494.074 kb on + strandat 494.075 kb on - strandat 494.075 kb on - strandat 494.075 kb on - strandat 494.241 kb on + strandat 494.241 kb on + strandat 494.241 kb on + strandat 494.242 kb on - strandat 494.245 kb on + strandat 494.245 kb on + strandat 494.245 kb on + strandat 494.245 kb on + strandat 494.245 kb on + strandat 494.245 kb on + strandat 494.246 kb on - strandat 494.246 kb on - strandat 494.246 kb on - strandat 494.246 kb on - strandat 494.246 kb on - strandat 494.289 kb on + strandat 494.289 kb on + strandat 494.290 kb on - strandat 494.290 kb on - strandat 494.290 kb on - strandat 494.342 kb on + strandat 494.343 kb on - strandat 494.343 kb on - strandat 494.343 kb on - strandat 494.519 kb on + strand, within Pf6N2E2_425at 494.520 kb on - strand, within Pf6N2E2_425at 494.555 kb on + strand, within Pf6N2E2_425at 494.664 kb on - strand, within Pf6N2E2_425at 494.664 kb on - strand, within Pf6N2E2_425at 494.828 kb on + strandat 495.046 kb on + strand, within Pf6N2E2_426at 495.047 kb on - strand, within Pf6N2E2_426at 495.047 kb on - strand, within Pf6N2E2_426at 495.047 kb on - strand, within Pf6N2E2_426at 495.147 kb on + strand, within Pf6N2E2_426at 495.147 kb on + strand, within Pf6N2E2_426at 495.148 kb on - strand, within Pf6N2E2_426at 495.148 kb on - strand, within Pf6N2E2_426at 495.148 kb on - strand, within Pf6N2E2_426at 495.148 kb on - strand, within Pf6N2E2_426at 495.358 kb on + strandat 495.358 kb on + strandat 495.359 kb on - strandat 495.359 kb on - strandat 495.359 kb on - strandat 495.360 kb on + strandat 495.377 kb on - strandat 495.378 kb on + strandat 495.689 kb on - strandat 495.689 kb on - strandat 495.770 kb on + strandat 495.771 kb on - strandat 495.771 kb on - strandat 495.818 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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493,348 + Pf6N2E2_424 0.46 +1.3
493,348 + Pf6N2E2_424 0.46 +0.4
493,349 - Pf6N2E2_424 0.46 +0.1
493,470 + Pf6N2E2_424 0.55 +2.7
493,471 - Pf6N2E2_424 0.55 +0.5
493,545 + Pf6N2E2_424 0.60 +0.7
493,546 - Pf6N2E2_424 0.60 +0.5
493,589 + Pf6N2E2_424 0.63 +0.3
493,590 - Pf6N2E2_424 0.63 +1.6
493,590 - Pf6N2E2_424 0.63 +0.5
493,590 - Pf6N2E2_424 0.63 +2.0
493,595 + Pf6N2E2_424 0.64 +0.2
493,595 + Pf6N2E2_424 0.64 +1.0
493,595 + Pf6N2E2_424 0.64 -0.2
493,694 + Pf6N2E2_424 0.71 +0.1
493,695 - Pf6N2E2_424 0.71 +0.7
493,695 - Pf6N2E2_424 0.71 -0.2
493,901 + Pf6N2E2_424 0.86 +0.4
493,902 - Pf6N2E2_424 0.86 +1.2
493,982 + +1.0
493,982 + +0.8
493,982 + +1.1
493,982 + -0.0
493,982 + -1.0
493,982 + +0.6
493,982 + +0.4
493,982 + +1.1
493,982 + -0.9
493,983 - +0.7
493,983 - +0.2
493,986 + +0.1
494,074 + +1.3
494,074 + -1.8
494,074 + +0.1
494,074 + -0.2
494,074 + +0.6
494,074 + +0.5
494,075 - +1.3
494,075 - +0.7
494,075 - +1.7
494,241 + +0.5
494,241 + -1.5
494,241 + -0.5
494,242 - +0.0
494,245 + -0.3
494,245 + +0.2
494,245 + +0.4
494,245 + -1.6
494,245 + +1.1
494,245 + +1.0
494,246 - -2.2
494,246 - -0.8
494,246 - +1.0
494,246 - +2.3
494,246 - -0.6
494,289 + +0.1
494,289 + +1.6
494,290 - +1.1
494,290 - +0.7
494,290 - -0.8
494,342 + -0.3
494,343 - -1.3
494,343 - -0.7
494,343 - +0.1
494,519 + Pf6N2E2_425 0.39 -0.7
494,520 - Pf6N2E2_425 0.40 -1.6
494,555 + Pf6N2E2_425 0.46 +0.6
494,664 - Pf6N2E2_425 0.66 -1.1
494,664 - Pf6N2E2_425 0.66 -1.2
494,828 + -0.6
495,046 + Pf6N2E2_426 0.44 +0.1
495,047 - Pf6N2E2_426 0.44 -0.3
495,047 - Pf6N2E2_426 0.44 -0.6
495,047 - Pf6N2E2_426 0.44 +0.7
495,147 + Pf6N2E2_426 0.66 +1.1
495,147 + Pf6N2E2_426 0.66 +0.8
495,148 - Pf6N2E2_426 0.66 -1.0
495,148 - Pf6N2E2_426 0.66 -0.3
495,148 - Pf6N2E2_426 0.66 +0.4
495,148 - Pf6N2E2_426 0.66 +0.4
495,358 + -0.7
495,358 + -1.7
495,359 - +0.4
495,359 - +0.7
495,359 - -0.2
495,360 + +0.1
495,377 - -0.7
495,378 + +0.1
495,689 - -0.8
495,689 - +0.0
495,770 + +0.5
495,771 - +0.0
495,771 - +1.4
495,818 - +1.3

Or see this region's nucleotide sequence