Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4187 and Pf6N2E2_4188 are separated by 43 nucleotides Pf6N2E2_4188 and Pf6N2E2_4189 are separated by 120 nucleotides
Pf6N2E2_4187 - Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-), at 4,872,302 to 4,873,189
_4187
Pf6N2E2_4188 - DNA-3-methyladenine glycosylase (EC 3.2.2.20), at 4,873,233 to 4,873,751
_4188
Pf6N2E2_4189 - Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14), at 4,873,872 to 4,874,825
_4189
Position (kb)
4873
4874 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4872.238 kb on + strand at 4872.307 kb on - strand at 4872.360 kb on + strand at 4872.361 kb on - strand at 4872.384 kb on + strand at 4872.438 kb on + strand, within Pf6N2E2_4187 at 4872.438 kb on + strand, within Pf6N2E2_4187 at 4872.438 kb on + strand, within Pf6N2E2_4187 at 4872.438 kb on + strand at 4872.438 kb on + strand, within Pf6N2E2_4187 at 4872.438 kb on + strand, within Pf6N2E2_4187 at 4872.439 kb on - strand, within Pf6N2E2_4187 at 4872.439 kb on - strand, within Pf6N2E2_4187 at 4872.439 kb on - strand, within Pf6N2E2_4187 at 4872.439 kb on - strand, within Pf6N2E2_4187 at 4872.439 kb on - strand, within Pf6N2E2_4187 at 4872.439 kb on - strand, within Pf6N2E2_4187 at 4872.798 kb on + strand, within Pf6N2E2_4187 at 4872.799 kb on - strand, within Pf6N2E2_4187 at 4872.799 kb on - strand, within Pf6N2E2_4187 at 4873.206 kb on + strand at 4873.207 kb on - strand at 4873.207 kb on - strand at 4873.315 kb on + strand, within Pf6N2E2_4188 at 4873.437 kb on - strand, within Pf6N2E2_4188 at 4873.609 kb on + strand, within Pf6N2E2_4188 at 4873.610 kb on - strand, within Pf6N2E2_4188 at 4873.744 kb on + strand at 4873.744 kb on + strand at 4873.745 kb on - strand at 4873.753 kb on + strand at 4873.754 kb on - strand at 4873.754 kb on - strand at 4873.754 kb on - strand at 4873.791 kb on - strand at 4873.791 kb on - strand at 4873.791 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 4,872,238 + -0.7 4,872,307 - +1.1 4,872,360 + +0.0 4,872,361 - +1.0 4,872,384 + +0.5 4,872,438 + Pf6N2E2_4187 0.15 +3.7 4,872,438 + Pf6N2E2_4187 0.15 -1.0 4,872,438 + Pf6N2E2_4187 0.15 +0.8 4,872,438 + +1.2 4,872,438 + Pf6N2E2_4187 0.15 +0.6 4,872,438 + Pf6N2E2_4187 0.15 -0.5 4,872,439 - Pf6N2E2_4187 0.15 +0.6 4,872,439 - Pf6N2E2_4187 0.15 -0.1 4,872,439 - Pf6N2E2_4187 0.15 +1.8 4,872,439 - Pf6N2E2_4187 0.15 +0.9 4,872,439 - Pf6N2E2_4187 0.15 +1.5 4,872,439 - Pf6N2E2_4187 0.15 +1.6 4,872,798 + Pf6N2E2_4187 0.56 +0.6 4,872,799 - Pf6N2E2_4187 0.56 -0.3 4,872,799 - Pf6N2E2_4187 0.56 +1.6 4,873,206 + +0.4 4,873,207 - +0.5 4,873,207 - +1.0 4,873,315 + Pf6N2E2_4188 0.16 -0.1 4,873,437 - Pf6N2E2_4188 0.39 -1.5 4,873,609 + Pf6N2E2_4188 0.72 -1.4 4,873,610 - Pf6N2E2_4188 0.73 +0.3 4,873,744 + +0.8 4,873,744 + +1.5 4,873,745 - -0.5 4,873,753 + +0.9 4,873,754 - +0.1 4,873,754 - +0.5 4,873,754 - -0.1 4,873,791 - +0.2 4,873,791 - -1.1 4,873,791 - -0.3
Or see this region's nucleotide sequence