Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4188

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4187 and Pf6N2E2_4188 are separated by 43 nucleotidesPf6N2E2_4188 and Pf6N2E2_4189 are separated by 120 nucleotides Pf6N2E2_4187 - Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-), at 4,872,302 to 4,873,189 _4187 Pf6N2E2_4188 - DNA-3-methyladenine glycosylase (EC 3.2.2.20), at 4,873,233 to 4,873,751 _4188 Pf6N2E2_4189 - Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14), at 4,873,872 to 4,874,825 _4189 Position (kb) 4873 4874Strain fitness (log2 ratio) -1 0 1 2 3at 4872.238 kb on + strandat 4872.307 kb on - strandat 4872.360 kb on + strandat 4872.361 kb on - strandat 4872.384 kb on + strandat 4872.438 kb on + strand, within Pf6N2E2_4187at 4872.438 kb on + strand, within Pf6N2E2_4187at 4872.438 kb on + strand, within Pf6N2E2_4187at 4872.438 kb on + strandat 4872.438 kb on + strand, within Pf6N2E2_4187at 4872.438 kb on + strand, within Pf6N2E2_4187at 4872.439 kb on - strand, within Pf6N2E2_4187at 4872.439 kb on - strand, within Pf6N2E2_4187at 4872.439 kb on - strand, within Pf6N2E2_4187at 4872.439 kb on - strand, within Pf6N2E2_4187at 4872.439 kb on - strand, within Pf6N2E2_4187at 4872.439 kb on - strand, within Pf6N2E2_4187at 4872.798 kb on + strand, within Pf6N2E2_4187at 4872.799 kb on - strand, within Pf6N2E2_4187at 4872.799 kb on - strand, within Pf6N2E2_4187at 4873.206 kb on + strandat 4873.207 kb on - strandat 4873.207 kb on - strandat 4873.315 kb on + strand, within Pf6N2E2_4188at 4873.437 kb on - strand, within Pf6N2E2_4188at 4873.609 kb on + strand, within Pf6N2E2_4188at 4873.610 kb on - strand, within Pf6N2E2_4188at 4873.744 kb on + strandat 4873.744 kb on + strandat 4873.745 kb on - strandat 4873.753 kb on + strandat 4873.754 kb on - strandat 4873.754 kb on - strandat 4873.754 kb on - strandat 4873.791 kb on - strandat 4873.791 kb on - strandat 4873.791 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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4,872,238 + -0.7
4,872,307 - +1.1
4,872,360 + +0.0
4,872,361 - +1.0
4,872,384 + +0.5
4,872,438 + Pf6N2E2_4187 0.15 +3.7
4,872,438 + Pf6N2E2_4187 0.15 -1.0
4,872,438 + Pf6N2E2_4187 0.15 +0.8
4,872,438 + +1.2
4,872,438 + Pf6N2E2_4187 0.15 +0.6
4,872,438 + Pf6N2E2_4187 0.15 -0.5
4,872,439 - Pf6N2E2_4187 0.15 +0.6
4,872,439 - Pf6N2E2_4187 0.15 -0.1
4,872,439 - Pf6N2E2_4187 0.15 +1.8
4,872,439 - Pf6N2E2_4187 0.15 +0.9
4,872,439 - Pf6N2E2_4187 0.15 +1.5
4,872,439 - Pf6N2E2_4187 0.15 +1.6
4,872,798 + Pf6N2E2_4187 0.56 +0.6
4,872,799 - Pf6N2E2_4187 0.56 -0.3
4,872,799 - Pf6N2E2_4187 0.56 +1.6
4,873,206 + +0.4
4,873,207 - +0.5
4,873,207 - +1.0
4,873,315 + Pf6N2E2_4188 0.16 -0.1
4,873,437 - Pf6N2E2_4188 0.39 -1.5
4,873,609 + Pf6N2E2_4188 0.72 -1.4
4,873,610 - Pf6N2E2_4188 0.73 +0.3
4,873,744 + +0.8
4,873,744 + +1.5
4,873,745 - -0.5
4,873,753 + +0.9
4,873,754 - +0.1
4,873,754 - +0.5
4,873,754 - -0.1
4,873,791 - +0.2
4,873,791 - -1.1
4,873,791 - -0.3

Or see this region's nucleotide sequence