Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4104

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4101 and Pf6N2E2_4102 are separated by 8 nucleotidesPf6N2E2_4102 and Pf6N2E2_4103 are separated by 70 nucleotidesPf6N2E2_4103 and Pf6N2E2_4104 overlap by 35 nucleotidesPf6N2E2_4104 and Pf6N2E2_4105 are separated by 10 nucleotides Pf6N2E2_4101 - Cytochrome c oxidase polypeptide III (EC 1.9.3.1), at 4,781,930 to 4,782,817 _4101 Pf6N2E2_4102 - hypothetical protein, at 4,782,826 to 4,783,029 _4102 Pf6N2E2_4103 - Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion, at 4,783,100 to 4,783,837 _4103 Pf6N2E2_4104 - Probable transmembrane protein, at 4,783,803 to 4,784,396 _4104 Pf6N2E2_4105 - Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA, at 4,784,407 to 4,785,486 _4105 Position (kb) 4783 4784 4785Strain fitness (log2 ratio) -2 -1 0 1 2at 4782.806 kb on + strandat 4782.806 kb on + strandat 4782.806 kb on + strandat 4782.806 kb on + strandat 4782.807 kb on - strandat 4782.807 kb on - strandat 4782.807 kb on - strandat 4782.807 kb on - strandat 4782.807 kb on - strandat 4783.025 kb on - strandat 4783.064 kb on + strandat 4783.064 kb on + strandat 4783.064 kb on + strandat 4783.064 kb on + strandat 4783.064 kb on + strandat 4783.064 kb on + strandat 4783.064 kb on + strandat 4783.065 kb on - strandat 4783.065 kb on - strandat 4783.065 kb on - strandat 4783.066 kb on + strandat 4783.066 kb on + strandat 4783.066 kb on + strandat 4783.066 kb on + strandat 4783.066 kb on + strandat 4783.066 kb on + strandat 4783.066 kb on + strandat 4783.066 kb on + strandat 4783.066 kb on + strandat 4783.066 kb on + strandat 4783.066 kb on + strandat 4783.066 kb on + strandat 4783.066 kb on + strandat 4783.066 kb on + strandat 4783.066 kb on + strandat 4783.066 kb on + strandat 4783.066 kb on + strandat 4783.066 kb on + strandat 4783.066 kb on + strandat 4783.066 kb on + strandat 4783.066 kb on + strandat 4783.066 kb on + strandat 4783.066 kb on + strandat 4783.066 kb on + strandat 4783.066 kb on + strandat 4783.066 kb on + strandat 4783.066 kb on + strandat 4783.066 kb on + strandat 4783.066 kb on + strandat 4783.066 kb on + strandat 4783.066 kb on + strandat 4783.066 kb on + strandat 4783.066 kb on + strandat 4783.067 kb on - strandat 4783.067 kb on - strandat 4783.067 kb on - strandat 4783.067 kb on - strandat 4783.067 kb on - strandat 4783.067 kb on - strandat 4783.067 kb on - strandat 4783.067 kb on - strandat 4783.067 kb on - strandat 4783.067 kb on - strandat 4783.067 kb on - strandat 4783.067 kb on - strandat 4783.067 kb on - strandat 4783.067 kb on - strandat 4783.067 kb on - strandat 4783.067 kb on - strandat 4783.067 kb on - strandat 4783.067 kb on - strandat 4783.067 kb on - strandat 4783.067 kb on - strandat 4783.067 kb on - strandat 4783.067 kb on - strandat 4783.067 kb on - strandat 4783.067 kb on - strandat 4783.067 kb on - strandat 4783.067 kb on - strandat 4783.071 kb on - strandat 4783.223 kb on + strand, within Pf6N2E2_4103at 4783.223 kb on + strand, within Pf6N2E2_4103at 4783.223 kb on + strand, within Pf6N2E2_4103at 4783.223 kb on + strand, within Pf6N2E2_4103at 4783.224 kb on - strand, within Pf6N2E2_4103at 4783.224 kb on - strand, within Pf6N2E2_4103at 4783.224 kb on - strand, within Pf6N2E2_4103at 4783.224 kb on - strand, within Pf6N2E2_4103at 4783.302 kb on + strand, within Pf6N2E2_4103at 4783.302 kb on + strand, within Pf6N2E2_4103at 4783.302 kb on + strand, within Pf6N2E2_4103at 4783.303 kb on - strand, within Pf6N2E2_4103at 4783.303 kb on - strand, within Pf6N2E2_4103at 4783.514 kb on + strand, within Pf6N2E2_4103at 4783.514 kb on + strand, within Pf6N2E2_4103at 4783.514 kb on + strand, within Pf6N2E2_4103at 4783.514 kb on + strand, within Pf6N2E2_4103at 4783.514 kb on + strand, within Pf6N2E2_4103at 4783.514 kb on + strand, within Pf6N2E2_4103at 4783.514 kb on + strand, within Pf6N2E2_4103at 4783.515 kb on - strand, within Pf6N2E2_4103at 4783.515 kb on - strand, within Pf6N2E2_4103at 4783.515 kb on - strand, within Pf6N2E2_4103at 4783.772 kb on + strandat 4783.772 kb on + strandat 4783.932 kb on + strand, within Pf6N2E2_4104at 4783.932 kb on + strand, within Pf6N2E2_4104at 4783.932 kb on + strand, within Pf6N2E2_4104at 4783.932 kb on + strand, within Pf6N2E2_4104at 4783.933 kb on - strand, within Pf6N2E2_4104at 4783.933 kb on - strand, within Pf6N2E2_4104at 4783.933 kb on - strand, within Pf6N2E2_4104at 4783.933 kb on - strand, within Pf6N2E2_4104at 4783.933 kb on - strand, within Pf6N2E2_4104at 4783.933 kb on - strand, within Pf6N2E2_4104at 4783.933 kb on - strand, within Pf6N2E2_4104at 4783.933 kb on - strand, within Pf6N2E2_4104at 4783.933 kb on - strand, within Pf6N2E2_4104at 4783.933 kb on - strand, within Pf6N2E2_4104at 4783.968 kb on + strand, within Pf6N2E2_4104at 4783.969 kb on - strand, within Pf6N2E2_4104at 4783.969 kb on - strand, within Pf6N2E2_4104at 4784.018 kb on - strand, within Pf6N2E2_4104at 4784.094 kb on + strand, within Pf6N2E2_4104at 4784.094 kb on + strand, within Pf6N2E2_4104at 4784.185 kb on - strand, within Pf6N2E2_4104at 4784.248 kb on - strand, within Pf6N2E2_4104at 4784.284 kb on + strand, within Pf6N2E2_4104at 4784.284 kb on + strand, within Pf6N2E2_4104at 4784.284 kb on + strand, within Pf6N2E2_4104at 4784.284 kb on + strand, within Pf6N2E2_4104at 4784.284 kb on + strand, within Pf6N2E2_4104at 4784.284 kb on + strand, within Pf6N2E2_4104at 4784.284 kb on + strand, within Pf6N2E2_4104at 4784.285 kb on - strand, within Pf6N2E2_4104at 4784.285 kb on - strand, within Pf6N2E2_4104at 4784.285 kb on - strand, within Pf6N2E2_4104at 4784.285 kb on - strand, within Pf6N2E2_4104at 4784.285 kb on - strand, within Pf6N2E2_4104at 4784.285 kb on - strand, within Pf6N2E2_4104at 4784.285 kb on - strand, within Pf6N2E2_4104at 4784.479 kb on + strandat 4784.479 kb on + strandat 4784.479 kb on + strandat 4784.530 kb on + strand, within Pf6N2E2_4105at 4784.530 kb on + strand, within Pf6N2E2_4105at 4784.642 kb on - strand, within Pf6N2E2_4105at 4784.642 kb on - strand, within Pf6N2E2_4105at 4784.672 kb on + strand, within Pf6N2E2_4105at 4784.989 kb on + strand, within Pf6N2E2_4105at 4785.094 kb on + strand, within Pf6N2E2_4105at 4785.094 kb on + strand, within Pf6N2E2_4105at 4785.094 kb on + strand, within Pf6N2E2_4105at 4785.094 kb on + strand, within Pf6N2E2_4105at 4785.095 kb on - strand, within Pf6N2E2_4105at 4785.176 kb on + strand, within Pf6N2E2_4105at 4785.364 kb on + strand, within Pf6N2E2_4105at 4785.364 kb on + strand, within Pf6N2E2_4105at 4785.364 kb on + strand, within Pf6N2E2_4105at 4785.364 kb on + strand, within Pf6N2E2_4105at 4785.365 kb on - strand, within Pf6N2E2_4105at 4785.365 kb on - strand, within Pf6N2E2_4105at 4785.365 kb on - strand, within Pf6N2E2_4105

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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4,782,806 + +0.7
4,782,806 + +0.3
4,782,806 + -0.1
4,782,806 + -0.6
4,782,807 - +1.1
4,782,807 - +1.1
4,782,807 - +0.2
4,782,807 - +1.0
4,782,807 - +0.3
4,783,025 - +0.1
4,783,064 + -1.0
4,783,064 + -0.0
4,783,064 + +0.7
4,783,064 + +0.5
4,783,064 + +0.5
4,783,064 + +0.3
4,783,064 + +0.5
4,783,065 - -0.2
4,783,065 - +0.3
4,783,065 - +0.4
4,783,066 + +1.0
4,783,066 + -0.5
4,783,066 + -0.3
4,783,066 + -0.3
4,783,066 + +0.2
4,783,066 + +0.0
4,783,066 + +0.9
4,783,066 + +0.6
4,783,066 + +0.9
4,783,066 + -0.2
4,783,066 + -0.4
4,783,066 + +0.6
4,783,066 + +0.9
4,783,066 + -1.0
4,783,066 + +0.3
4,783,066 + +1.0
4,783,066 + +0.2
4,783,066 + +0.8
4,783,066 + +0.6
4,783,066 + +0.4
4,783,066 + +2.5
4,783,066 + -0.1
4,783,066 + -0.0
4,783,066 + +1.3
4,783,066 + +0.3
4,783,066 + -0.6
4,783,066 + +0.4
4,783,066 + +0.6
4,783,066 + +0.4
4,783,066 + +0.8
4,783,066 + +0.3
4,783,066 + +0.2
4,783,066 + +1.0
4,783,067 - +1.4
4,783,067 - +0.3
4,783,067 - +0.5
4,783,067 - +0.7
4,783,067 - +0.9
4,783,067 - -0.4
4,783,067 - -0.2
4,783,067 - +1.8
4,783,067 - -0.3
4,783,067 - +0.5
4,783,067 - +0.1
4,783,067 - +1.0
4,783,067 - -1.5
4,783,067 - +0.3
4,783,067 - +1.5
4,783,067 - +0.1
4,783,067 - +0.1
4,783,067 - -0.2
4,783,067 - +0.9
4,783,067 - +1.0
4,783,067 - +0.8
4,783,067 - +0.0
4,783,067 - +0.3
4,783,067 - +0.3
4,783,067 - +0.4
4,783,067 - -0.8
4,783,071 - -0.1
4,783,223 + Pf6N2E2_4103 0.17 -0.3
4,783,223 + Pf6N2E2_4103 0.17 -0.5
4,783,223 + Pf6N2E2_4103 0.17 +1.2
4,783,223 + Pf6N2E2_4103 0.17 +0.7
4,783,224 - Pf6N2E2_4103 0.17 -1.0
4,783,224 - Pf6N2E2_4103 0.17 +0.2
4,783,224 - Pf6N2E2_4103 0.17 -0.1
4,783,224 - Pf6N2E2_4103 0.17 +0.5
4,783,302 + Pf6N2E2_4103 0.27 +0.1
4,783,302 + Pf6N2E2_4103 0.27 +0.7
4,783,302 + Pf6N2E2_4103 0.27 -0.3
4,783,303 - Pf6N2E2_4103 0.28 +0.5
4,783,303 - Pf6N2E2_4103 0.28 -0.3
4,783,514 + Pf6N2E2_4103 0.56 +0.5
4,783,514 + Pf6N2E2_4103 0.56 +0.6
4,783,514 + Pf6N2E2_4103 0.56 +0.6
4,783,514 + Pf6N2E2_4103 0.56 -0.3
4,783,514 + Pf6N2E2_4103 0.56 -0.1
4,783,514 + Pf6N2E2_4103 0.56 +0.1
4,783,514 + Pf6N2E2_4103 0.56 -2.4
4,783,515 - Pf6N2E2_4103 0.56 +0.9
4,783,515 - Pf6N2E2_4103 0.56 +0.3
4,783,515 - Pf6N2E2_4103 0.56 -0.4
4,783,772 + +0.3
4,783,772 + +1.1
4,783,932 + Pf6N2E2_4104 0.22 +0.2
4,783,932 + Pf6N2E2_4104 0.22 +0.2
4,783,932 + Pf6N2E2_4104 0.22 +0.2
4,783,932 + Pf6N2E2_4104 0.22 +0.8
4,783,933 - Pf6N2E2_4104 0.22 +0.7
4,783,933 - Pf6N2E2_4104 0.22 +0.1
4,783,933 - Pf6N2E2_4104 0.22 -0.4
4,783,933 - Pf6N2E2_4104 0.22 +0.6
4,783,933 - Pf6N2E2_4104 0.22 +0.6
4,783,933 - Pf6N2E2_4104 0.22 +0.9
4,783,933 - Pf6N2E2_4104 0.22 -1.0
4,783,933 - Pf6N2E2_4104 0.22 -0.1
4,783,933 - Pf6N2E2_4104 0.22 +0.0
4,783,933 - Pf6N2E2_4104 0.22 -0.4
4,783,968 + Pf6N2E2_4104 0.28 +0.4
4,783,969 - Pf6N2E2_4104 0.28 +0.7
4,783,969 - Pf6N2E2_4104 0.28 +0.4
4,784,018 - Pf6N2E2_4104 0.36 +0.9
4,784,094 + Pf6N2E2_4104 0.49 -0.1
4,784,094 + Pf6N2E2_4104 0.49 +1.0
4,784,185 - Pf6N2E2_4104 0.64 +0.1
4,784,248 - Pf6N2E2_4104 0.75 +0.7
4,784,284 + Pf6N2E2_4104 0.81 +0.1
4,784,284 + Pf6N2E2_4104 0.81 +1.6
4,784,284 + Pf6N2E2_4104 0.81 +0.1
4,784,284 + Pf6N2E2_4104 0.81 +0.5
4,784,284 + Pf6N2E2_4104 0.81 -0.1
4,784,284 + Pf6N2E2_4104 0.81 +0.4
4,784,284 + Pf6N2E2_4104 0.81 +0.4
4,784,285 - Pf6N2E2_4104 0.81 +0.1
4,784,285 - Pf6N2E2_4104 0.81 +0.1
4,784,285 - Pf6N2E2_4104 0.81 +0.5
4,784,285 - Pf6N2E2_4104 0.81 -1.2
4,784,285 - Pf6N2E2_4104 0.81 -0.4
4,784,285 - Pf6N2E2_4104 0.81 -0.2
4,784,285 - Pf6N2E2_4104 0.81 +0.3
4,784,479 + +0.7
4,784,479 + +0.4
4,784,479 + +1.3
4,784,530 + Pf6N2E2_4105 0.11 -1.1
4,784,530 + Pf6N2E2_4105 0.11 +0.2
4,784,642 - Pf6N2E2_4105 0.22 +0.3
4,784,642 - Pf6N2E2_4105 0.22 +0.2
4,784,672 + Pf6N2E2_4105 0.25 +0.3
4,784,989 + Pf6N2E2_4105 0.54 +0.5
4,785,094 + Pf6N2E2_4105 0.64 +0.4
4,785,094 + Pf6N2E2_4105 0.64 +0.6
4,785,094 + Pf6N2E2_4105 0.64 +0.5
4,785,094 + Pf6N2E2_4105 0.64 +1.1
4,785,095 - Pf6N2E2_4105 0.64 +0.8
4,785,176 + Pf6N2E2_4105 0.71 -1.2
4,785,364 + Pf6N2E2_4105 0.89 +0.2
4,785,364 + Pf6N2E2_4105 0.89 +0.5
4,785,364 + Pf6N2E2_4105 0.89 +0.7
4,785,364 + Pf6N2E2_4105 0.89 -0.5
4,785,365 - Pf6N2E2_4105 0.89 +0.7
4,785,365 - Pf6N2E2_4105 0.89 -0.2
4,785,365 - Pf6N2E2_4105 0.89 +0.3

Or see this region's nucleotide sequence