Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4101 and Pf6N2E2_4102 are separated by 8 nucleotides Pf6N2E2_4102 and Pf6N2E2_4103 are separated by 70 nucleotides Pf6N2E2_4103 and Pf6N2E2_4104 overlap by 35 nucleotides Pf6N2E2_4104 and Pf6N2E2_4105 are separated by 10 nucleotides
Pf6N2E2_4101 - Cytochrome c oxidase polypeptide III (EC 1.9.3.1), at 4,781,930 to 4,782,817
_4101
Pf6N2E2_4102 - hypothetical protein, at 4,782,826 to 4,783,029
_4102
Pf6N2E2_4103 - Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion, at 4,783,100 to 4,783,837
_4103
Pf6N2E2_4104 - Probable transmembrane protein, at 4,783,803 to 4,784,396
_4104
Pf6N2E2_4105 - Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA, at 4,784,407 to 4,785,486
_4105
Position (kb)
4783
4784
4785 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4782.806 kb on + strand at 4782.806 kb on + strand at 4782.806 kb on + strand at 4782.806 kb on + strand at 4782.807 kb on - strand at 4782.807 kb on - strand at 4782.807 kb on - strand at 4782.807 kb on - strand at 4782.807 kb on - strand at 4783.025 kb on - strand at 4783.064 kb on + strand at 4783.064 kb on + strand at 4783.064 kb on + strand at 4783.064 kb on + strand at 4783.064 kb on + strand at 4783.064 kb on + strand at 4783.064 kb on + strand at 4783.065 kb on - strand at 4783.065 kb on - strand at 4783.065 kb on - strand at 4783.066 kb on + strand at 4783.066 kb on + strand at 4783.066 kb on + strand at 4783.066 kb on + strand at 4783.066 kb on + strand at 4783.066 kb on + strand at 4783.066 kb on + strand at 4783.066 kb on + strand at 4783.066 kb on + strand at 4783.066 kb on + strand at 4783.066 kb on + strand at 4783.066 kb on + strand at 4783.066 kb on + strand at 4783.066 kb on + strand at 4783.066 kb on + strand at 4783.066 kb on + strand at 4783.066 kb on + strand at 4783.066 kb on + strand at 4783.066 kb on + strand at 4783.066 kb on + strand at 4783.066 kb on + strand at 4783.066 kb on + strand at 4783.066 kb on + strand at 4783.066 kb on + strand at 4783.066 kb on + strand at 4783.066 kb on + strand at 4783.066 kb on + strand at 4783.066 kb on + strand at 4783.066 kb on + strand at 4783.066 kb on + strand at 4783.066 kb on + strand at 4783.066 kb on + strand at 4783.066 kb on + strand at 4783.067 kb on - strand at 4783.067 kb on - strand at 4783.067 kb on - strand at 4783.067 kb on - strand at 4783.067 kb on - strand at 4783.067 kb on - strand at 4783.067 kb on - strand at 4783.067 kb on - strand at 4783.067 kb on - strand at 4783.067 kb on - strand at 4783.067 kb on - strand at 4783.067 kb on - strand at 4783.067 kb on - strand at 4783.067 kb on - strand at 4783.067 kb on - strand at 4783.067 kb on - strand at 4783.067 kb on - strand at 4783.067 kb on - strand at 4783.067 kb on - strand at 4783.067 kb on - strand at 4783.067 kb on - strand at 4783.067 kb on - strand at 4783.067 kb on - strand at 4783.067 kb on - strand at 4783.067 kb on - strand at 4783.067 kb on - strand at 4783.071 kb on - strand at 4783.223 kb on + strand, within Pf6N2E2_4103 at 4783.223 kb on + strand, within Pf6N2E2_4103 at 4783.223 kb on + strand, within Pf6N2E2_4103 at 4783.223 kb on + strand, within Pf6N2E2_4103 at 4783.224 kb on - strand, within Pf6N2E2_4103 at 4783.224 kb on - strand, within Pf6N2E2_4103 at 4783.224 kb on - strand, within Pf6N2E2_4103 at 4783.224 kb on - strand, within Pf6N2E2_4103 at 4783.302 kb on + strand, within Pf6N2E2_4103 at 4783.302 kb on + strand, within Pf6N2E2_4103 at 4783.302 kb on + strand, within Pf6N2E2_4103 at 4783.303 kb on - strand, within Pf6N2E2_4103 at 4783.303 kb on - strand, within Pf6N2E2_4103 at 4783.514 kb on + strand, within Pf6N2E2_4103 at 4783.514 kb on + strand, within Pf6N2E2_4103 at 4783.514 kb on + strand, within Pf6N2E2_4103 at 4783.514 kb on + strand, within Pf6N2E2_4103 at 4783.514 kb on + strand, within Pf6N2E2_4103 at 4783.514 kb on + strand, within Pf6N2E2_4103 at 4783.514 kb on + strand, within Pf6N2E2_4103 at 4783.515 kb on - strand, within Pf6N2E2_4103 at 4783.515 kb on - strand, within Pf6N2E2_4103 at 4783.515 kb on - strand, within Pf6N2E2_4103 at 4783.772 kb on + strand at 4783.772 kb on + strand at 4783.932 kb on + strand, within Pf6N2E2_4104 at 4783.932 kb on + strand, within Pf6N2E2_4104 at 4783.932 kb on + strand, within Pf6N2E2_4104 at 4783.932 kb on + strand, within Pf6N2E2_4104 at 4783.933 kb on - strand, within Pf6N2E2_4104 at 4783.933 kb on - strand, within Pf6N2E2_4104 at 4783.933 kb on - strand, within Pf6N2E2_4104 at 4783.933 kb on - strand, within Pf6N2E2_4104 at 4783.933 kb on - strand, within Pf6N2E2_4104 at 4783.933 kb on - strand, within Pf6N2E2_4104 at 4783.933 kb on - strand, within Pf6N2E2_4104 at 4783.933 kb on - strand, within Pf6N2E2_4104 at 4783.933 kb on - strand, within Pf6N2E2_4104 at 4783.933 kb on - strand, within Pf6N2E2_4104 at 4783.968 kb on + strand, within Pf6N2E2_4104 at 4783.969 kb on - strand, within Pf6N2E2_4104 at 4783.969 kb on - strand, within Pf6N2E2_4104 at 4784.018 kb on - strand, within Pf6N2E2_4104 at 4784.094 kb on + strand, within Pf6N2E2_4104 at 4784.094 kb on + strand, within Pf6N2E2_4104 at 4784.185 kb on - strand, within Pf6N2E2_4104 at 4784.248 kb on - strand, within Pf6N2E2_4104 at 4784.284 kb on + strand, within Pf6N2E2_4104 at 4784.284 kb on + strand, within Pf6N2E2_4104 at 4784.284 kb on + strand, within Pf6N2E2_4104 at 4784.284 kb on + strand, within Pf6N2E2_4104 at 4784.284 kb on + strand, within Pf6N2E2_4104 at 4784.284 kb on + strand, within Pf6N2E2_4104 at 4784.284 kb on + strand, within Pf6N2E2_4104 at 4784.285 kb on - strand, within Pf6N2E2_4104 at 4784.285 kb on - strand, within Pf6N2E2_4104 at 4784.285 kb on - strand, within Pf6N2E2_4104 at 4784.285 kb on - strand, within Pf6N2E2_4104 at 4784.285 kb on - strand, within Pf6N2E2_4104 at 4784.285 kb on - strand, within Pf6N2E2_4104 at 4784.285 kb on - strand, within Pf6N2E2_4104 at 4784.479 kb on + strand at 4784.479 kb on + strand at 4784.479 kb on + strand at 4784.530 kb on + strand, within Pf6N2E2_4105 at 4784.530 kb on + strand, within Pf6N2E2_4105 at 4784.642 kb on - strand, within Pf6N2E2_4105 at 4784.642 kb on - strand, within Pf6N2E2_4105 at 4784.672 kb on + strand, within Pf6N2E2_4105 at 4784.989 kb on + strand, within Pf6N2E2_4105 at 4785.094 kb on + strand, within Pf6N2E2_4105 at 4785.094 kb on + strand, within Pf6N2E2_4105 at 4785.094 kb on + strand, within Pf6N2E2_4105 at 4785.094 kb on + strand, within Pf6N2E2_4105 at 4785.095 kb on - strand, within Pf6N2E2_4105 at 4785.176 kb on + strand, within Pf6N2E2_4105 at 4785.364 kb on + strand, within Pf6N2E2_4105 at 4785.364 kb on + strand, within Pf6N2E2_4105 at 4785.364 kb on + strand, within Pf6N2E2_4105 at 4785.364 kb on + strand, within Pf6N2E2_4105 at 4785.365 kb on - strand, within Pf6N2E2_4105 at 4785.365 kb on - strand, within Pf6N2E2_4105 at 4785.365 kb on - strand, within Pf6N2E2_4105
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 4,782,806 + +0.7 4,782,806 + +0.3 4,782,806 + -0.1 4,782,806 + -0.6 4,782,807 - +1.1 4,782,807 - +1.1 4,782,807 - +0.2 4,782,807 - +1.0 4,782,807 - +0.3 4,783,025 - +0.1 4,783,064 + -1.0 4,783,064 + -0.0 4,783,064 + +0.7 4,783,064 + +0.5 4,783,064 + +0.5 4,783,064 + +0.3 4,783,064 + +0.5 4,783,065 - -0.2 4,783,065 - +0.3 4,783,065 - +0.4 4,783,066 + +1.0 4,783,066 + -0.5 4,783,066 + -0.3 4,783,066 + -0.3 4,783,066 + +0.2 4,783,066 + +0.0 4,783,066 + +0.9 4,783,066 + +0.6 4,783,066 + +0.9 4,783,066 + -0.2 4,783,066 + -0.4 4,783,066 + +0.6 4,783,066 + +0.9 4,783,066 + -1.0 4,783,066 + +0.3 4,783,066 + +1.0 4,783,066 + +0.2 4,783,066 + +0.8 4,783,066 + +0.6 4,783,066 + +0.4 4,783,066 + +2.5 4,783,066 + -0.1 4,783,066 + -0.0 4,783,066 + +1.3 4,783,066 + +0.3 4,783,066 + -0.6 4,783,066 + +0.4 4,783,066 + +0.6 4,783,066 + +0.4 4,783,066 + +0.8 4,783,066 + +0.3 4,783,066 + +0.2 4,783,066 + +1.0 4,783,067 - +1.4 4,783,067 - +0.3 4,783,067 - +0.5 4,783,067 - +0.7 4,783,067 - +0.9 4,783,067 - -0.4 4,783,067 - -0.2 4,783,067 - +1.8 4,783,067 - -0.3 4,783,067 - +0.5 4,783,067 - +0.1 4,783,067 - +1.0 4,783,067 - -1.5 4,783,067 - +0.3 4,783,067 - +1.5 4,783,067 - +0.1 4,783,067 - +0.1 4,783,067 - -0.2 4,783,067 - +0.9 4,783,067 - +1.0 4,783,067 - +0.8 4,783,067 - +0.0 4,783,067 - +0.3 4,783,067 - +0.3 4,783,067 - +0.4 4,783,067 - -0.8 4,783,071 - -0.1 4,783,223 + Pf6N2E2_4103 0.17 -0.3 4,783,223 + Pf6N2E2_4103 0.17 -0.5 4,783,223 + Pf6N2E2_4103 0.17 +1.2 4,783,223 + Pf6N2E2_4103 0.17 +0.7 4,783,224 - Pf6N2E2_4103 0.17 -1.0 4,783,224 - Pf6N2E2_4103 0.17 +0.2 4,783,224 - Pf6N2E2_4103 0.17 -0.1 4,783,224 - Pf6N2E2_4103 0.17 +0.5 4,783,302 + Pf6N2E2_4103 0.27 +0.1 4,783,302 + Pf6N2E2_4103 0.27 +0.7 4,783,302 + Pf6N2E2_4103 0.27 -0.3 4,783,303 - Pf6N2E2_4103 0.28 +0.5 4,783,303 - Pf6N2E2_4103 0.28 -0.3 4,783,514 + Pf6N2E2_4103 0.56 +0.5 4,783,514 + Pf6N2E2_4103 0.56 +0.6 4,783,514 + Pf6N2E2_4103 0.56 +0.6 4,783,514 + Pf6N2E2_4103 0.56 -0.3 4,783,514 + Pf6N2E2_4103 0.56 -0.1 4,783,514 + Pf6N2E2_4103 0.56 +0.1 4,783,514 + Pf6N2E2_4103 0.56 -2.4 4,783,515 - Pf6N2E2_4103 0.56 +0.9 4,783,515 - Pf6N2E2_4103 0.56 +0.3 4,783,515 - Pf6N2E2_4103 0.56 -0.4 4,783,772 + +0.3 4,783,772 + +1.1 4,783,932 + Pf6N2E2_4104 0.22 +0.2 4,783,932 + Pf6N2E2_4104 0.22 +0.2 4,783,932 + Pf6N2E2_4104 0.22 +0.2 4,783,932 + Pf6N2E2_4104 0.22 +0.8 4,783,933 - Pf6N2E2_4104 0.22 +0.7 4,783,933 - Pf6N2E2_4104 0.22 +0.1 4,783,933 - Pf6N2E2_4104 0.22 -0.4 4,783,933 - Pf6N2E2_4104 0.22 +0.6 4,783,933 - Pf6N2E2_4104 0.22 +0.6 4,783,933 - Pf6N2E2_4104 0.22 +0.9 4,783,933 - Pf6N2E2_4104 0.22 -1.0 4,783,933 - Pf6N2E2_4104 0.22 -0.1 4,783,933 - Pf6N2E2_4104 0.22 +0.0 4,783,933 - Pf6N2E2_4104 0.22 -0.4 4,783,968 + Pf6N2E2_4104 0.28 +0.4 4,783,969 - Pf6N2E2_4104 0.28 +0.7 4,783,969 - Pf6N2E2_4104 0.28 +0.4 4,784,018 - Pf6N2E2_4104 0.36 +0.9 4,784,094 + Pf6N2E2_4104 0.49 -0.1 4,784,094 + Pf6N2E2_4104 0.49 +1.0 4,784,185 - Pf6N2E2_4104 0.64 +0.1 4,784,248 - Pf6N2E2_4104 0.75 +0.7 4,784,284 + Pf6N2E2_4104 0.81 +0.1 4,784,284 + Pf6N2E2_4104 0.81 +1.6 4,784,284 + Pf6N2E2_4104 0.81 +0.1 4,784,284 + Pf6N2E2_4104 0.81 +0.5 4,784,284 + Pf6N2E2_4104 0.81 -0.1 4,784,284 + Pf6N2E2_4104 0.81 +0.4 4,784,284 + Pf6N2E2_4104 0.81 +0.4 4,784,285 - Pf6N2E2_4104 0.81 +0.1 4,784,285 - Pf6N2E2_4104 0.81 +0.1 4,784,285 - Pf6N2E2_4104 0.81 +0.5 4,784,285 - Pf6N2E2_4104 0.81 -1.2 4,784,285 - Pf6N2E2_4104 0.81 -0.4 4,784,285 - Pf6N2E2_4104 0.81 -0.2 4,784,285 - Pf6N2E2_4104 0.81 +0.3 4,784,479 + +0.7 4,784,479 + +0.4 4,784,479 + +1.3 4,784,530 + Pf6N2E2_4105 0.11 -1.1 4,784,530 + Pf6N2E2_4105 0.11 +0.2 4,784,642 - Pf6N2E2_4105 0.22 +0.3 4,784,642 - Pf6N2E2_4105 0.22 +0.2 4,784,672 + Pf6N2E2_4105 0.25 +0.3 4,784,989 + Pf6N2E2_4105 0.54 +0.5 4,785,094 + Pf6N2E2_4105 0.64 +0.4 4,785,094 + Pf6N2E2_4105 0.64 +0.6 4,785,094 + Pf6N2E2_4105 0.64 +0.5 4,785,094 + Pf6N2E2_4105 0.64 +1.1 4,785,095 - Pf6N2E2_4105 0.64 +0.8 4,785,176 + Pf6N2E2_4105 0.71 -1.2 4,785,364 + Pf6N2E2_4105 0.89 +0.2 4,785,364 + Pf6N2E2_4105 0.89 +0.5 4,785,364 + Pf6N2E2_4105 0.89 +0.7 4,785,364 + Pf6N2E2_4105 0.89 -0.5 4,785,365 - Pf6N2E2_4105 0.89 +0.7 4,785,365 - Pf6N2E2_4105 0.89 -0.2 4,785,365 - Pf6N2E2_4105 0.89 +0.3
Or see this region's nucleotide sequence