Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_373 and Pf6N2E2_374 are separated by 87 nucleotides Pf6N2E2_374 and Pf6N2E2_375 are separated by 45 nucleotides Pf6N2E2_375 and Pf6N2E2_376 are separated by 128 nucleotides
Pf6N2E2_373 - Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19), at 440,796 to 442,088
_373
Pf6N2E2_374 - FIG00953249: hypothetical protein, at 442,176 to 442,832
_374
Pf6N2E2_375 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 442,878 to 443,366
_375
Pf6N2E2_376 - Similar to non-heme chloroperoxidase, sll5080 homolog, at 443,495 to 444,448
_376
Position (kb) 442
443 Strain fitness (log2 ratio) -2
-1
0
1 at 441.270 kb on + strand, within Pf6N2E2_373 at 441.271 kb on - strand, within Pf6N2E2_373 at 441.330 kb on + strand, within Pf6N2E2_373 at 441.330 kb on + strand, within Pf6N2E2_373 at 441.699 kb on + strand, within Pf6N2E2_373 at 441.700 kb on - strand, within Pf6N2E2_373 at 442.133 kb on + strand at 442.327 kb on + strand, within Pf6N2E2_374 at 442.328 kb on - strand, within Pf6N2E2_374 at 442.341 kb on + strand, within Pf6N2E2_374 at 442.503 kb on + strand, within Pf6N2E2_374 at 442.503 kb on + strand, within Pf6N2E2_374 at 442.503 kb on + strand, within Pf6N2E2_374 at 442.504 kb on - strand, within Pf6N2E2_374 at 442.774 kb on - strand at 442.774 kb on - strand at 442.839 kb on + strand at 442.853 kb on - strand at 442.853 kb on - strand at 443.043 kb on + strand, within Pf6N2E2_375 at 443.043 kb on + strand, within Pf6N2E2_375 at 443.170 kb on + strand, within Pf6N2E2_375 at 443.171 kb on - strand, within Pf6N2E2_375 at 443.205 kb on + strand, within Pf6N2E2_375 at 443.292 kb on + strand, within Pf6N2E2_375 at 443.301 kb on + strand, within Pf6N2E2_375 at 443.301 kb on + strand, within Pf6N2E2_375 at 443.497 kb on - strand at 443.497 kb on - strand at 443.736 kb on + strand, within Pf6N2E2_376 at 443.737 kb on - strand, within Pf6N2E2_376 at 443.740 kb on + strand, within Pf6N2E2_376 at 443.740 kb on + strand, within Pf6N2E2_376 at 443.740 kb on + strand, within Pf6N2E2_376 at 443.741 kb on - strand, within Pf6N2E2_376 at 443.741 kb on - strand, within Pf6N2E2_376 at 443.741 kb on - strand, within Pf6N2E2_376 at 443.820 kb on + strand, within Pf6N2E2_376 at 443.820 kb on + strand, within Pf6N2E2_376
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 441,270 + Pf6N2E2_373 0.37 +0.1 441,271 - Pf6N2E2_373 0.37 +0.6 441,330 + Pf6N2E2_373 0.41 +0.3 441,330 + Pf6N2E2_373 0.41 -0.3 441,699 + Pf6N2E2_373 0.70 -0.4 441,700 - Pf6N2E2_373 0.70 -0.9 442,133 + -0.2 442,327 + Pf6N2E2_374 0.23 -1.0 442,328 - Pf6N2E2_374 0.23 -1.6 442,341 + Pf6N2E2_374 0.25 -0.4 442,503 + Pf6N2E2_374 0.50 -0.5 442,503 + Pf6N2E2_374 0.50 -1.9 442,503 + Pf6N2E2_374 0.50 -2.0 442,504 - Pf6N2E2_374 0.50 -0.2 442,774 - -0.3 442,774 - -0.0 442,839 + -0.2 442,853 - -0.0 442,853 - -1.5 443,043 + Pf6N2E2_375 0.34 +0.0 443,043 + Pf6N2E2_375 0.34 +0.6 443,170 + Pf6N2E2_375 0.60 +1.7 443,171 - Pf6N2E2_375 0.60 -0.1 443,205 + Pf6N2E2_375 0.67 -0.3 443,292 + Pf6N2E2_375 0.85 +0.7 443,301 + Pf6N2E2_375 0.87 -0.7 443,301 + Pf6N2E2_375 0.87 -0.0 443,497 - +0.2 443,497 - -0.1 443,736 + Pf6N2E2_376 0.25 +0.9 443,737 - Pf6N2E2_376 0.25 +0.3 443,740 + Pf6N2E2_376 0.26 +1.0 443,740 + Pf6N2E2_376 0.26 -1.8 443,740 + Pf6N2E2_376 0.26 +0.2 443,741 - Pf6N2E2_376 0.26 -0.5 443,741 - Pf6N2E2_376 0.26 +0.8 443,741 - Pf6N2E2_376 0.26 -0.2 443,820 + Pf6N2E2_376 0.34 +0.2 443,820 + Pf6N2E2_376 0.34 +0.7
Or see this region's nucleotide sequence