Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3637 and Pf6N2E2_3638 are separated by 640 nucleotides Pf6N2E2_3638 and Pf6N2E2_3639 are separated by 716 nucleotides
Pf6N2E2_3637 - yqiA-like hydrolase, affects the cell envelope (from data) , at 4,236,906 to 4,237,514
_3637
Pf6N2E2_3638 - hypothetical protein, at 4,238,155 to 4,238,358
_3638
Pf6N2E2_3639 - 3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17), at 4,239,075 to 4,239,911
_3639
Position (kb)
4238
4239 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4237.213 kb on + strand, within Pf6N2E2_3637 at 4237.297 kb on + strand, within Pf6N2E2_3637 at 4237.297 kb on + strand, within Pf6N2E2_3637 at 4237.297 kb on + strand, within Pf6N2E2_3637 at 4237.297 kb on + strand, within Pf6N2E2_3637 at 4237.297 kb on + strand, within Pf6N2E2_3637 at 4237.297 kb on + strand, within Pf6N2E2_3637 at 4237.298 kb on - strand, within Pf6N2E2_3637 at 4237.298 kb on - strand, within Pf6N2E2_3637 at 4237.298 kb on - strand, within Pf6N2E2_3637 at 4237.298 kb on - strand, within Pf6N2E2_3637 at 4237.298 kb on - strand, within Pf6N2E2_3637 at 4237.298 kb on - strand, within Pf6N2E2_3637 at 4237.407 kb on + strand, within Pf6N2E2_3637 at 4237.407 kb on + strand, within Pf6N2E2_3637 at 4237.407 kb on + strand, within Pf6N2E2_3637 at 4237.407 kb on + strand, within Pf6N2E2_3637 at 4237.407 kb on + strand, within Pf6N2E2_3637 at 4237.408 kb on - strand, within Pf6N2E2_3637 at 4237.408 kb on - strand, within Pf6N2E2_3637 at 4237.408 kb on - strand, within Pf6N2E2_3637 at 4237.437 kb on + strand, within Pf6N2E2_3637 at 4237.437 kb on + strand, within Pf6N2E2_3637 at 4237.437 kb on + strand, within Pf6N2E2_3637 at 4237.437 kb on + strand, within Pf6N2E2_3637 at 4237.437 kb on + strand, within Pf6N2E2_3637 at 4237.437 kb on + strand, within Pf6N2E2_3637 at 4237.438 kb on - strand, within Pf6N2E2_3637 at 4237.438 kb on - strand, within Pf6N2E2_3637 at 4237.438 kb on - strand, within Pf6N2E2_3637 at 4237.438 kb on - strand, within Pf6N2E2_3637 at 4237.438 kb on - strand, within Pf6N2E2_3637 at 4237.438 kb on - strand, within Pf6N2E2_3637 at 4237.493 kb on + strand at 4237.494 kb on - strand at 4237.495 kb on + strand at 4237.495 kb on + strand at 4237.495 kb on + strand at 4237.495 kb on + strand at 4237.496 kb on - strand at 4237.496 kb on - strand at 4237.496 kb on - strand at 4237.502 kb on + strand at 4237.503 kb on - strand at 4237.503 kb on - strand at 4237.589 kb on + strand at 4237.590 kb on - strand at 4237.590 kb on - strand at 4237.624 kb on + strand at 4237.669 kb on - strand at 4237.669 kb on - strand at 4237.673 kb on - strand at 4237.673 kb on - strand at 4237.673 kb on - strand at 4237.699 kb on - strand at 4237.699 kb on - strand at 4237.972 kb on + strand at 4237.972 kb on + strand at 4237.972 kb on + strand at 4238.037 kb on + strand at 4238.037 kb on + strand at 4238.037 kb on + strand at 4238.037 kb on + strand at 4238.038 kb on - strand at 4238.038 kb on - strand at 4238.038 kb on - strand at 4238.038 kb on - strand at 4238.038 kb on - strand at 4238.156 kb on + strand at 4238.157 kb on - strand at 4238.157 kb on - strand at 4238.297 kb on - strand, within Pf6N2E2_3638 at 4238.318 kb on - strand, within Pf6N2E2_3638 at 4238.348 kb on - strand at 4238.408 kb on + strand at 4238.408 kb on + strand at 4238.503 kb on - strand at 4238.514 kb on + strand at 4238.514 kb on + strand at 4238.514 kb on + strand at 4238.515 kb on - strand at 4238.515 kb on - strand at 4238.515 kb on - strand at 4238.515 kb on - strand at 4238.528 kb on + strand at 4238.528 kb on + strand at 4238.528 kb on + strand at 4238.529 kb on - strand at 4238.539 kb on + strand at 4238.539 kb on + strand at 4238.540 kb on - strand at 4238.540 kb on - strand at 4238.540 kb on - strand at 4238.540 kb on - strand at 4238.540 kb on - strand at 4238.540 kb on - strand at 4238.772 kb on + strand at 4238.773 kb on - strand at 4238.773 kb on - strand at 4238.774 kb on + strand at 4238.774 kb on + strand at 4238.775 kb on - strand at 4238.834 kb on - strand at 4238.834 kb on - strand at 4238.834 kb on - strand at 4238.834 kb on - strand at 4238.873 kb on + strand at 4239.032 kb on - strand at 4239.032 kb on - strand at 4239.032 kb on - strand at 4239.032 kb on - strand at 4239.036 kb on - strand at 4239.036 kb on - strand at 4239.057 kb on + strand at 4239.058 kb on - strand at 4239.058 kb on - strand at 4239.058 kb on - strand at 4239.058 kb on - strand at 4239.058 kb on - strand at 4239.058 kb on - strand at 4239.058 kb on - strand at 4239.058 kb on - strand at 4239.061 kb on + strand at 4239.062 kb on - strand at 4239.062 kb on - strand at 4239.062 kb on - strand at 4239.062 kb on - strand at 4239.095 kb on - strand at 4239.095 kb on - strand at 4239.095 kb on - strand at 4239.105 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 4,237,213 + Pf6N2E2_3637 0.50 -0.4 4,237,297 + Pf6N2E2_3637 0.64 -0.1 4,237,297 + Pf6N2E2_3637 0.64 -1.2 4,237,297 + Pf6N2E2_3637 0.64 -0.1 4,237,297 + Pf6N2E2_3637 0.64 +0.1 4,237,297 + Pf6N2E2_3637 0.64 +0.9 4,237,297 + Pf6N2E2_3637 0.64 +0.1 4,237,298 - Pf6N2E2_3637 0.64 +1.0 4,237,298 - Pf6N2E2_3637 0.64 -1.2 4,237,298 - Pf6N2E2_3637 0.64 +0.4 4,237,298 - Pf6N2E2_3637 0.64 -0.4 4,237,298 - Pf6N2E2_3637 0.64 +0.2 4,237,298 - Pf6N2E2_3637 0.64 -0.7 4,237,407 + Pf6N2E2_3637 0.82 -0.3 4,237,407 + Pf6N2E2_3637 0.82 +0.9 4,237,407 + Pf6N2E2_3637 0.82 +0.4 4,237,407 + Pf6N2E2_3637 0.82 +0.3 4,237,407 + Pf6N2E2_3637 0.82 -0.4 4,237,408 - Pf6N2E2_3637 0.82 -0.8 4,237,408 - Pf6N2E2_3637 0.82 +0.9 4,237,408 - Pf6N2E2_3637 0.82 +0.7 4,237,437 + Pf6N2E2_3637 0.87 -0.2 4,237,437 + Pf6N2E2_3637 0.87 +0.5 4,237,437 + Pf6N2E2_3637 0.87 +0.3 4,237,437 + Pf6N2E2_3637 0.87 -0.5 4,237,437 + Pf6N2E2_3637 0.87 +0.6 4,237,437 + Pf6N2E2_3637 0.87 +0.3 4,237,438 - Pf6N2E2_3637 0.87 +1.0 4,237,438 - Pf6N2E2_3637 0.87 +1.2 4,237,438 - Pf6N2E2_3637 0.87 +0.1 4,237,438 - Pf6N2E2_3637 0.87 -0.8 4,237,438 - Pf6N2E2_3637 0.87 +1.0 4,237,438 - Pf6N2E2_3637 0.87 -0.8 4,237,493 + +0.2 4,237,494 - +0.2 4,237,495 + -0.6 4,237,495 + -0.0 4,237,495 + -1.2 4,237,495 + +0.4 4,237,496 - +0.6 4,237,496 - +1.2 4,237,496 - -0.2 4,237,502 + +0.6 4,237,503 - -0.1 4,237,503 - -0.3 4,237,589 + +0.2 4,237,590 - +1.5 4,237,590 - +0.1 4,237,624 + -0.0 4,237,669 - +0.5 4,237,669 - -0.0 4,237,673 - +0.0 4,237,673 - +0.5 4,237,673 - -0.1 4,237,699 - +0.6 4,237,699 - +0.5 4,237,972 + -0.7 4,237,972 + -0.1 4,237,972 + -0.3 4,238,037 + +0.8 4,238,037 + +0.5 4,238,037 + +0.6 4,238,037 + +0.4 4,238,038 - +0.1 4,238,038 - +2.1 4,238,038 - -0.2 4,238,038 - -1.0 4,238,038 - -0.0 4,238,156 + -0.6 4,238,157 - +0.3 4,238,157 - -0.0 4,238,297 - Pf6N2E2_3638 0.70 -0.5 4,238,318 - Pf6N2E2_3638 0.80 -1.1 4,238,348 - +0.4 4,238,408 + +0.9 4,238,408 + -0.7 4,238,503 - -0.5 4,238,514 + +0.2 4,238,514 + -0.9 4,238,514 + +0.8 4,238,515 - +0.2 4,238,515 - -0.1 4,238,515 - +0.9 4,238,515 - +1.1 4,238,528 + -0.1 4,238,528 + -0.1 4,238,528 + +0.4 4,238,529 - +1.7 4,238,539 + -0.4 4,238,539 + +0.4 4,238,540 - +2.9 4,238,540 - +2.0 4,238,540 - +1.8 4,238,540 - +2.0 4,238,540 - +1.3 4,238,540 - +1.3 4,238,772 + +0.4 4,238,773 - +0.3 4,238,773 - +0.3 4,238,774 + -0.5 4,238,774 + -0.4 4,238,775 - +0.3 4,238,834 - +0.3 4,238,834 - -0.4 4,238,834 - -0.9 4,238,834 - +1.1 4,238,873 + -1.6 4,239,032 - -0.0 4,239,032 - -1.8 4,239,032 - +0.8 4,239,032 - +1.1 4,239,036 - -0.8 4,239,036 - -0.5 4,239,057 + -1.9 4,239,058 - +0.6 4,239,058 - +0.2 4,239,058 - +1.3 4,239,058 - +0.7 4,239,058 - -0.1 4,239,058 - -0.8 4,239,058 - -1.3 4,239,058 - +0.6 4,239,061 + +0.3 4,239,062 - +0.4 4,239,062 - +0.4 4,239,062 - -0.4 4,239,062 - -0.1 4,239,095 - +1.4 4,239,095 - +0.4 4,239,095 - +0.5 4,239,105 - +0.4
Or see this region's nucleotide sequence