Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3638

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3637 and Pf6N2E2_3638 are separated by 640 nucleotidesPf6N2E2_3638 and Pf6N2E2_3639 are separated by 716 nucleotides Pf6N2E2_3637 - yqiA-like hydrolase, affects the cell envelope (from data), at 4,236,906 to 4,237,514 _3637 Pf6N2E2_3638 - hypothetical protein, at 4,238,155 to 4,238,358 _3638 Pf6N2E2_3639 - 3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17), at 4,239,075 to 4,239,911 _3639 Position (kb) 4238 4239Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4237.213 kb on + strand, within Pf6N2E2_3637at 4237.297 kb on + strand, within Pf6N2E2_3637at 4237.297 kb on + strand, within Pf6N2E2_3637at 4237.297 kb on + strand, within Pf6N2E2_3637at 4237.297 kb on + strand, within Pf6N2E2_3637at 4237.297 kb on + strand, within Pf6N2E2_3637at 4237.297 kb on + strand, within Pf6N2E2_3637at 4237.298 kb on - strand, within Pf6N2E2_3637at 4237.298 kb on - strand, within Pf6N2E2_3637at 4237.298 kb on - strand, within Pf6N2E2_3637at 4237.298 kb on - strand, within Pf6N2E2_3637at 4237.298 kb on - strand, within Pf6N2E2_3637at 4237.298 kb on - strand, within Pf6N2E2_3637at 4237.407 kb on + strand, within Pf6N2E2_3637at 4237.407 kb on + strand, within Pf6N2E2_3637at 4237.407 kb on + strand, within Pf6N2E2_3637at 4237.407 kb on + strand, within Pf6N2E2_3637at 4237.407 kb on + strand, within Pf6N2E2_3637at 4237.408 kb on - strand, within Pf6N2E2_3637at 4237.408 kb on - strand, within Pf6N2E2_3637at 4237.408 kb on - strand, within Pf6N2E2_3637at 4237.437 kb on + strand, within Pf6N2E2_3637at 4237.437 kb on + strand, within Pf6N2E2_3637at 4237.437 kb on + strand, within Pf6N2E2_3637at 4237.437 kb on + strand, within Pf6N2E2_3637at 4237.437 kb on + strand, within Pf6N2E2_3637at 4237.437 kb on + strand, within Pf6N2E2_3637at 4237.438 kb on - strand, within Pf6N2E2_3637at 4237.438 kb on - strand, within Pf6N2E2_3637at 4237.438 kb on - strand, within Pf6N2E2_3637at 4237.438 kb on - strand, within Pf6N2E2_3637at 4237.438 kb on - strand, within Pf6N2E2_3637at 4237.438 kb on - strand, within Pf6N2E2_3637at 4237.493 kb on + strandat 4237.494 kb on - strandat 4237.495 kb on + strandat 4237.495 kb on + strandat 4237.495 kb on + strandat 4237.495 kb on + strandat 4237.496 kb on - strandat 4237.496 kb on - strandat 4237.496 kb on - strandat 4237.502 kb on + strandat 4237.503 kb on - strandat 4237.503 kb on - strandat 4237.589 kb on + strandat 4237.590 kb on - strandat 4237.590 kb on - strandat 4237.624 kb on + strandat 4237.669 kb on - strandat 4237.669 kb on - strandat 4237.673 kb on - strandat 4237.673 kb on - strandat 4237.673 kb on - strandat 4237.699 kb on - strandat 4237.699 kb on - strandat 4237.972 kb on + strandat 4237.972 kb on + strandat 4237.972 kb on + strandat 4238.037 kb on + strandat 4238.037 kb on + strandat 4238.037 kb on + strandat 4238.037 kb on + strandat 4238.038 kb on - strandat 4238.038 kb on - strandat 4238.038 kb on - strandat 4238.038 kb on - strandat 4238.038 kb on - strandat 4238.156 kb on + strandat 4238.157 kb on - strandat 4238.157 kb on - strandat 4238.297 kb on - strand, within Pf6N2E2_3638at 4238.318 kb on - strand, within Pf6N2E2_3638at 4238.348 kb on - strandat 4238.408 kb on + strandat 4238.408 kb on + strandat 4238.503 kb on - strandat 4238.514 kb on + strandat 4238.514 kb on + strandat 4238.514 kb on + strandat 4238.515 kb on - strandat 4238.515 kb on - strandat 4238.515 kb on - strandat 4238.515 kb on - strandat 4238.528 kb on + strandat 4238.528 kb on + strandat 4238.528 kb on + strandat 4238.529 kb on - strandat 4238.539 kb on + strandat 4238.539 kb on + strandat 4238.540 kb on - strandat 4238.540 kb on - strandat 4238.540 kb on - strandat 4238.540 kb on - strandat 4238.540 kb on - strandat 4238.540 kb on - strandat 4238.772 kb on + strandat 4238.773 kb on - strandat 4238.773 kb on - strandat 4238.774 kb on + strandat 4238.774 kb on + strandat 4238.775 kb on - strandat 4238.834 kb on - strandat 4238.834 kb on - strandat 4238.834 kb on - strandat 4238.834 kb on - strandat 4238.873 kb on + strandat 4239.032 kb on - strandat 4239.032 kb on - strandat 4239.032 kb on - strandat 4239.032 kb on - strandat 4239.036 kb on - strandat 4239.036 kb on - strandat 4239.057 kb on + strandat 4239.058 kb on - strandat 4239.058 kb on - strandat 4239.058 kb on - strandat 4239.058 kb on - strandat 4239.058 kb on - strandat 4239.058 kb on - strandat 4239.058 kb on - strandat 4239.058 kb on - strandat 4239.061 kb on + strandat 4239.062 kb on - strandat 4239.062 kb on - strandat 4239.062 kb on - strandat 4239.062 kb on - strandat 4239.095 kb on - strandat 4239.095 kb on - strandat 4239.095 kb on - strandat 4239.105 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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4,237,213 + Pf6N2E2_3637 0.50 -0.4
4,237,297 + Pf6N2E2_3637 0.64 -0.1
4,237,297 + Pf6N2E2_3637 0.64 -1.2
4,237,297 + Pf6N2E2_3637 0.64 -0.1
4,237,297 + Pf6N2E2_3637 0.64 +0.1
4,237,297 + Pf6N2E2_3637 0.64 +0.9
4,237,297 + Pf6N2E2_3637 0.64 +0.1
4,237,298 - Pf6N2E2_3637 0.64 +1.0
4,237,298 - Pf6N2E2_3637 0.64 -1.2
4,237,298 - Pf6N2E2_3637 0.64 +0.4
4,237,298 - Pf6N2E2_3637 0.64 -0.4
4,237,298 - Pf6N2E2_3637 0.64 +0.2
4,237,298 - Pf6N2E2_3637 0.64 -0.7
4,237,407 + Pf6N2E2_3637 0.82 -0.3
4,237,407 + Pf6N2E2_3637 0.82 +0.9
4,237,407 + Pf6N2E2_3637 0.82 +0.4
4,237,407 + Pf6N2E2_3637 0.82 +0.3
4,237,407 + Pf6N2E2_3637 0.82 -0.4
4,237,408 - Pf6N2E2_3637 0.82 -0.8
4,237,408 - Pf6N2E2_3637 0.82 +0.9
4,237,408 - Pf6N2E2_3637 0.82 +0.7
4,237,437 + Pf6N2E2_3637 0.87 -0.2
4,237,437 + Pf6N2E2_3637 0.87 +0.5
4,237,437 + Pf6N2E2_3637 0.87 +0.3
4,237,437 + Pf6N2E2_3637 0.87 -0.5
4,237,437 + Pf6N2E2_3637 0.87 +0.6
4,237,437 + Pf6N2E2_3637 0.87 +0.3
4,237,438 - Pf6N2E2_3637 0.87 +1.0
4,237,438 - Pf6N2E2_3637 0.87 +1.2
4,237,438 - Pf6N2E2_3637 0.87 +0.1
4,237,438 - Pf6N2E2_3637 0.87 -0.8
4,237,438 - Pf6N2E2_3637 0.87 +1.0
4,237,438 - Pf6N2E2_3637 0.87 -0.8
4,237,493 + +0.2
4,237,494 - +0.2
4,237,495 + -0.6
4,237,495 + -0.0
4,237,495 + -1.2
4,237,495 + +0.4
4,237,496 - +0.6
4,237,496 - +1.2
4,237,496 - -0.2
4,237,502 + +0.6
4,237,503 - -0.1
4,237,503 - -0.3
4,237,589 + +0.2
4,237,590 - +1.5
4,237,590 - +0.1
4,237,624 + -0.0
4,237,669 - +0.5
4,237,669 - -0.0
4,237,673 - +0.0
4,237,673 - +0.5
4,237,673 - -0.1
4,237,699 - +0.6
4,237,699 - +0.5
4,237,972 + -0.7
4,237,972 + -0.1
4,237,972 + -0.3
4,238,037 + +0.8
4,238,037 + +0.5
4,238,037 + +0.6
4,238,037 + +0.4
4,238,038 - +0.1
4,238,038 - +2.1
4,238,038 - -0.2
4,238,038 - -1.0
4,238,038 - -0.0
4,238,156 + -0.6
4,238,157 - +0.3
4,238,157 - -0.0
4,238,297 - Pf6N2E2_3638 0.70 -0.5
4,238,318 - Pf6N2E2_3638 0.80 -1.1
4,238,348 - +0.4
4,238,408 + +0.9
4,238,408 + -0.7
4,238,503 - -0.5
4,238,514 + +0.2
4,238,514 + -0.9
4,238,514 + +0.8
4,238,515 - +0.2
4,238,515 - -0.1
4,238,515 - +0.9
4,238,515 - +1.1
4,238,528 + -0.1
4,238,528 + -0.1
4,238,528 + +0.4
4,238,529 - +1.7
4,238,539 + -0.4
4,238,539 + +0.4
4,238,540 - +2.9
4,238,540 - +2.0
4,238,540 - +1.8
4,238,540 - +2.0
4,238,540 - +1.3
4,238,540 - +1.3
4,238,772 + +0.4
4,238,773 - +0.3
4,238,773 - +0.3
4,238,774 + -0.5
4,238,774 + -0.4
4,238,775 - +0.3
4,238,834 - +0.3
4,238,834 - -0.4
4,238,834 - -0.9
4,238,834 - +1.1
4,238,873 + -1.6
4,239,032 - -0.0
4,239,032 - -1.8
4,239,032 - +0.8
4,239,032 - +1.1
4,239,036 - -0.8
4,239,036 - -0.5
4,239,057 + -1.9
4,239,058 - +0.6
4,239,058 - +0.2
4,239,058 - +1.3
4,239,058 - +0.7
4,239,058 - -0.1
4,239,058 - -0.8
4,239,058 - -1.3
4,239,058 - +0.6
4,239,061 + +0.3
4,239,062 - +0.4
4,239,062 - +0.4
4,239,062 - -0.4
4,239,062 - -0.1
4,239,095 - +1.4
4,239,095 - +0.4
4,239,095 - +0.5
4,239,105 - +0.4

Or see this region's nucleotide sequence