Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_28 and Pf6N2E2_29 are separated by 223 nucleotides Pf6N2E2_29 and Pf6N2E2_30 are separated by 37 nucleotides Pf6N2E2_30 and Pf6N2E2_31 are separated by 97 nucleotides
Pf6N2E2_28 - 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein, at 65,741 to 66,181
_28
Pf6N2E2_29 - Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily, at 66,405 to 66,905
_29
Pf6N2E2_30 - Antisigma transmembrane sensor FpvR, at 66,943 to 67,926
_30
Pf6N2E2_31 - Iron(III) dicitrate transport protein FecA @ Iron siderophore receptor protein, at 68,024 to 70,462
_31
Position (kb) 66
67
68 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 66.062 kb on + strand, within Pf6N2E2_28 at 66.063 kb on - strand, within Pf6N2E2_28 at 66.063 kb on - strand, within Pf6N2E2_28 at 66.208 kb on + strand at 66.209 kb on - strand at 66.248 kb on + strand at 66.248 kb on + strand at 66.248 kb on + strand at 66.248 kb on + strand at 66.249 kb on - strand at 66.249 kb on - strand at 66.296 kb on + strand at 66.296 kb on + strand at 66.296 kb on + strand at 66.297 kb on - strand at 66.297 kb on - strand at 66.297 kb on - strand at 66.302 kb on + strand at 66.302 kb on + strand at 66.303 kb on - strand at 66.303 kb on - strand at 66.303 kb on - strand at 66.303 kb on - strand at 66.303 kb on - strand at 66.303 kb on - strand at 66.303 kb on - strand at 66.342 kb on + strand at 66.343 kb on - strand at 66.343 kb on - strand at 66.343 kb on - strand at 66.355 kb on + strand at 66.447 kb on + strand at 66.448 kb on - strand at 66.448 kb on - strand at 66.574 kb on - strand, within Pf6N2E2_29 at 66.577 kb on + strand, within Pf6N2E2_29 at 66.577 kb on + strand, within Pf6N2E2_29 at 66.577 kb on + strand, within Pf6N2E2_29 at 66.577 kb on + strand, within Pf6N2E2_29 at 66.577 kb on + strand, within Pf6N2E2_29 at 66.577 kb on + strand, within Pf6N2E2_29 at 66.662 kb on + strand, within Pf6N2E2_29 at 66.663 kb on - strand, within Pf6N2E2_29 at 66.693 kb on + strand, within Pf6N2E2_29 at 66.693 kb on + strand, within Pf6N2E2_29 at 66.693 kb on + strand, within Pf6N2E2_29 at 66.693 kb on + strand, within Pf6N2E2_29 at 66.694 kb on - strand, within Pf6N2E2_29 at 66.694 kb on - strand, within Pf6N2E2_29 at 66.694 kb on - strand, within Pf6N2E2_29 at 66.694 kb on - strand, within Pf6N2E2_29 at 66.694 kb on - strand, within Pf6N2E2_29 at 66.849 kb on + strand, within Pf6N2E2_29 at 66.850 kb on - strand, within Pf6N2E2_29 at 66.850 kb on - strand, within Pf6N2E2_29 at 66.851 kb on + strand, within Pf6N2E2_29 at 66.851 kb on + strand, within Pf6N2E2_29 at 66.852 kb on - strand, within Pf6N2E2_29 at 66.852 kb on - strand, within Pf6N2E2_29 at 67.113 kb on + strand, within Pf6N2E2_30 at 67.113 kb on + strand, within Pf6N2E2_30 at 67.207 kb on + strand, within Pf6N2E2_30 at 67.282 kb on + strand, within Pf6N2E2_30 at 67.294 kb on + strand, within Pf6N2E2_30 at 67.294 kb on + strand, within Pf6N2E2_30 at 67.294 kb on + strand, within Pf6N2E2_30 at 67.295 kb on - strand, within Pf6N2E2_30 at 67.377 kb on + strand, within Pf6N2E2_30 at 67.377 kb on + strand, within Pf6N2E2_30 at 67.378 kb on - strand, within Pf6N2E2_30 at 67.687 kb on - strand, within Pf6N2E2_30 at 67.866 kb on + strand at 67.866 kb on + strand at 67.866 kb on + strand at 67.866 kb on + strand at 67.867 kb on - strand at 67.913 kb on + strand at 67.914 kb on - strand at 67.914 kb on - strand at 67.994 kb on - strand at 68.053 kb on + strand at 68.061 kb on + strand at 68.061 kb on + strand at 68.061 kb on + strand at 68.062 kb on - strand at 68.062 kb on - strand at 68.062 kb on - strand at 68.117 kb on + strand at 68.132 kb on - strand at 68.676 kb on - strand, within Pf6N2E2_31
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 66,062 + Pf6N2E2_28 0.73 +0.1 66,063 - Pf6N2E2_28 0.73 +0.3 66,063 - Pf6N2E2_28 0.73 -0.6 66,208 + +0.1 66,209 - -0.6 66,248 + -2.5 66,248 + +2.5 66,248 + +0.2 66,248 + +3.0 66,249 - +0.7 66,249 - +0.4 66,296 + -0.6 66,296 + +0.2 66,296 + +0.3 66,297 - +1.7 66,297 - -0.6 66,297 - -0.1 66,302 + +0.5 66,302 + +0.8 66,303 - -1.9 66,303 - +0.0 66,303 - -0.7 66,303 - +0.2 66,303 - -0.6 66,303 - -0.0 66,303 - +0.1 66,342 + +0.0 66,343 - +0.5 66,343 - +0.2 66,343 - +0.1 66,355 + -0.2 66,447 + +1.1 66,448 - +0.2 66,448 - -0.7 66,574 - Pf6N2E2_29 0.34 +0.9 66,577 + Pf6N2E2_29 0.34 +1.9 66,577 + Pf6N2E2_29 0.34 +0.3 66,577 + Pf6N2E2_29 0.34 -1.2 66,577 + Pf6N2E2_29 0.34 +1.3 66,577 + Pf6N2E2_29 0.34 -0.6 66,577 + Pf6N2E2_29 0.34 +0.4 66,662 + Pf6N2E2_29 0.51 +0.7 66,663 - Pf6N2E2_29 0.51 +0.7 66,693 + Pf6N2E2_29 0.57 +0.6 66,693 + Pf6N2E2_29 0.57 +1.8 66,693 + Pf6N2E2_29 0.57 +1.3 66,693 + Pf6N2E2_29 0.57 +0.9 66,694 - Pf6N2E2_29 0.58 -1.3 66,694 - Pf6N2E2_29 0.58 +0.2 66,694 - Pf6N2E2_29 0.58 -0.1 66,694 - Pf6N2E2_29 0.58 -0.4 66,694 - Pf6N2E2_29 0.58 +0.0 66,849 + Pf6N2E2_29 0.89 +0.7 66,850 - Pf6N2E2_29 0.89 -0.4 66,850 - Pf6N2E2_29 0.89 -1.6 66,851 + Pf6N2E2_29 0.89 -0.5 66,851 + Pf6N2E2_29 0.89 +0.5 66,852 - Pf6N2E2_29 0.89 +0.3 66,852 - Pf6N2E2_29 0.89 +0.3 67,113 + Pf6N2E2_30 0.17 -0.6 67,113 + Pf6N2E2_30 0.17 -0.1 67,207 + Pf6N2E2_30 0.27 -0.0 67,282 + Pf6N2E2_30 0.34 +0.2 67,294 + Pf6N2E2_30 0.36 +0.5 67,294 + Pf6N2E2_30 0.36 -0.0 67,294 + Pf6N2E2_30 0.36 -2.1 67,295 - Pf6N2E2_30 0.36 -0.3 67,377 + Pf6N2E2_30 0.44 -1.1 67,377 + Pf6N2E2_30 0.44 -1.0 67,378 - Pf6N2E2_30 0.44 +0.2 67,687 - Pf6N2E2_30 0.76 -0.8 67,866 + +0.7 67,866 + +2.0 67,866 + +0.2 67,866 + +1.3 67,867 - -0.2 67,913 + -0.6 67,914 - -0.7 67,914 - -0.6 67,994 - -0.4 68,053 + +1.3 68,061 + +0.2 68,061 + +0.6 68,061 + -0.4 68,062 - +1.3 68,062 - -0.7 68,062 - -1.5 68,117 + +0.7 68,132 - +0.5 68,676 - Pf6N2E2_31 0.27 -0.4
Or see this region's nucleotide sequence