Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2673 and Pf6N2E2_2674 are separated by 366 nucleotides Pf6N2E2_2674 and Pf6N2E2_2675 are separated by 245 nucleotides
Pf6N2E2_2673 - Cytochrome c family protein, at 3,160,050 to 3,162,554
_2673
Pf6N2E2_2674 - FIG00953856: hypothetical protein, at 3,162,921 to 3,163,196
_2674
Pf6N2E2_2675 - ATP-dependent RNA helicase SrmB, at 3,163,442 to 3,164,788
_2675
Position (kb)
3162
3163
3164 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3161.984 kb on - strand, within Pf6N2E2_2673 at 3162.043 kb on + strand, within Pf6N2E2_2673 at 3162.086 kb on + strand, within Pf6N2E2_2673 at 3162.119 kb on + strand, within Pf6N2E2_2673 at 3162.120 kb on - strand, within Pf6N2E2_2673 at 3162.183 kb on + strand, within Pf6N2E2_2673 at 3162.184 kb on - strand, within Pf6N2E2_2673 at 3162.184 kb on - strand, within Pf6N2E2_2673 at 3162.277 kb on + strand, within Pf6N2E2_2673 at 3162.278 kb on - strand, within Pf6N2E2_2673 at 3162.281 kb on + strand, within Pf6N2E2_2673 at 3162.296 kb on - strand, within Pf6N2E2_2673 at 3162.438 kb on + strand at 3162.439 kb on - strand at 3162.554 kb on + strand at 3162.598 kb on - strand at 3162.613 kb on + strand at 3162.614 kb on - strand at 3162.617 kb on + strand at 3162.683 kb on + strand at 3162.683 kb on + strand at 3162.684 kb on - strand at 3162.684 kb on - strand at 3162.684 kb on - strand at 3162.697 kb on + strand at 3162.698 kb on - strand at 3162.713 kb on + strand at 3162.713 kb on + strand at 3162.713 kb on + strand at 3162.713 kb on + strand at 3162.713 kb on + strand at 3162.713 kb on + strand at 3162.714 kb on - strand at 3162.751 kb on + strand at 3162.752 kb on - strand at 3162.780 kb on - strand at 3162.780 kb on - strand at 3162.792 kb on - strand at 3162.907 kb on + strand at 3162.908 kb on - strand at 3163.151 kb on + strand, within Pf6N2E2_2674 at 3163.204 kb on - strand at 3163.292 kb on + strand at 3163.293 kb on - strand at 3163.293 kb on - strand at 3163.373 kb on + strand at 3163.373 kb on + strand at 3163.373 kb on + strand at 3163.373 kb on + strand at 3163.373 kb on + strand at 3163.374 kb on - strand at 3163.393 kb on - strand at 3163.657 kb on - strand, within Pf6N2E2_2675
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 3,161,984 - Pf6N2E2_2673 0.77 -0.1 3,162,043 + Pf6N2E2_2673 0.80 -0.2 3,162,086 + Pf6N2E2_2673 0.81 -0.9 3,162,119 + Pf6N2E2_2673 0.83 -0.8 3,162,120 - Pf6N2E2_2673 0.83 +0.8 3,162,183 + Pf6N2E2_2673 0.85 -0.1 3,162,184 - Pf6N2E2_2673 0.85 +0.6 3,162,184 - Pf6N2E2_2673 0.85 +1.0 3,162,277 + Pf6N2E2_2673 0.89 -0.1 3,162,278 - Pf6N2E2_2673 0.89 +0.3 3,162,281 + Pf6N2E2_2673 0.89 -0.8 3,162,296 - Pf6N2E2_2673 0.90 +1.8 3,162,438 + +1.9 3,162,439 - -0.2 3,162,554 + +0.5 3,162,598 - +0.4 3,162,613 + +1.5 3,162,614 - +0.6 3,162,617 + -0.4 3,162,683 + +1.0 3,162,683 + +0.6 3,162,684 - -1.6 3,162,684 - -0.2 3,162,684 - +0.2 3,162,697 + +0.4 3,162,698 - +1.1 3,162,713 + +0.2 3,162,713 + +0.8 3,162,713 + -0.5 3,162,713 + +1.4 3,162,713 + +0.4 3,162,713 + +1.4 3,162,714 - -0.4 3,162,751 + -0.5 3,162,752 - +0.6 3,162,780 - -0.3 3,162,780 - -1.9 3,162,792 - -0.2 3,162,907 + +0.6 3,162,908 - +0.7 3,163,151 + Pf6N2E2_2674 0.83 -1.6 3,163,204 - -0.7 3,163,292 + -0.5 3,163,293 - -0.0 3,163,293 - -0.3 3,163,373 + +0.3 3,163,373 + -1.6 3,163,373 + -2.0 3,163,373 + +0.1 3,163,373 + -0.2 3,163,374 - +0.6 3,163,393 - +0.6 3,163,657 - Pf6N2E2_2675 0.16 -0.7
Or see this region's nucleotide sequence