Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2674

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2673 and Pf6N2E2_2674 are separated by 366 nucleotidesPf6N2E2_2674 and Pf6N2E2_2675 are separated by 245 nucleotides Pf6N2E2_2673 - Cytochrome c family protein, at 3,160,050 to 3,162,554 _2673 Pf6N2E2_2674 - FIG00953856: hypothetical protein, at 3,162,921 to 3,163,196 _2674 Pf6N2E2_2675 - ATP-dependent RNA helicase SrmB, at 3,163,442 to 3,164,788 _2675 Position (kb) 3162 3163 3164Strain fitness (log2 ratio) -2 -1 0 1 2at 3161.984 kb on - strand, within Pf6N2E2_2673at 3162.043 kb on + strand, within Pf6N2E2_2673at 3162.086 kb on + strand, within Pf6N2E2_2673at 3162.119 kb on + strand, within Pf6N2E2_2673at 3162.120 kb on - strand, within Pf6N2E2_2673at 3162.183 kb on + strand, within Pf6N2E2_2673at 3162.184 kb on - strand, within Pf6N2E2_2673at 3162.184 kb on - strand, within Pf6N2E2_2673at 3162.277 kb on + strand, within Pf6N2E2_2673at 3162.278 kb on - strand, within Pf6N2E2_2673at 3162.281 kb on + strand, within Pf6N2E2_2673at 3162.296 kb on - strand, within Pf6N2E2_2673at 3162.438 kb on + strandat 3162.439 kb on - strandat 3162.554 kb on + strandat 3162.598 kb on - strandat 3162.613 kb on + strandat 3162.614 kb on - strandat 3162.617 kb on + strandat 3162.683 kb on + strandat 3162.683 kb on + strandat 3162.684 kb on - strandat 3162.684 kb on - strandat 3162.684 kb on - strandat 3162.697 kb on + strandat 3162.698 kb on - strandat 3162.713 kb on + strandat 3162.713 kb on + strandat 3162.713 kb on + strandat 3162.713 kb on + strandat 3162.713 kb on + strandat 3162.713 kb on + strandat 3162.714 kb on - strandat 3162.751 kb on + strandat 3162.752 kb on - strandat 3162.780 kb on - strandat 3162.780 kb on - strandat 3162.792 kb on - strandat 3162.907 kb on + strandat 3162.908 kb on - strandat 3163.151 kb on + strand, within Pf6N2E2_2674at 3163.204 kb on - strandat 3163.292 kb on + strandat 3163.293 kb on - strandat 3163.293 kb on - strandat 3163.373 kb on + strandat 3163.373 kb on + strandat 3163.373 kb on + strandat 3163.373 kb on + strandat 3163.373 kb on + strandat 3163.374 kb on - strandat 3163.393 kb on - strandat 3163.657 kb on - strand, within Pf6N2E2_2675

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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3,161,984 - Pf6N2E2_2673 0.77 -0.1
3,162,043 + Pf6N2E2_2673 0.80 -0.2
3,162,086 + Pf6N2E2_2673 0.81 -0.9
3,162,119 + Pf6N2E2_2673 0.83 -0.8
3,162,120 - Pf6N2E2_2673 0.83 +0.8
3,162,183 + Pf6N2E2_2673 0.85 -0.1
3,162,184 - Pf6N2E2_2673 0.85 +0.6
3,162,184 - Pf6N2E2_2673 0.85 +1.0
3,162,277 + Pf6N2E2_2673 0.89 -0.1
3,162,278 - Pf6N2E2_2673 0.89 +0.3
3,162,281 + Pf6N2E2_2673 0.89 -0.8
3,162,296 - Pf6N2E2_2673 0.90 +1.8
3,162,438 + +1.9
3,162,439 - -0.2
3,162,554 + +0.5
3,162,598 - +0.4
3,162,613 + +1.5
3,162,614 - +0.6
3,162,617 + -0.4
3,162,683 + +1.0
3,162,683 + +0.6
3,162,684 - -1.6
3,162,684 - -0.2
3,162,684 - +0.2
3,162,697 + +0.4
3,162,698 - +1.1
3,162,713 + +0.2
3,162,713 + +0.8
3,162,713 + -0.5
3,162,713 + +1.4
3,162,713 + +0.4
3,162,713 + +1.4
3,162,714 - -0.4
3,162,751 + -0.5
3,162,752 - +0.6
3,162,780 - -0.3
3,162,780 - -1.9
3,162,792 - -0.2
3,162,907 + +0.6
3,162,908 - +0.7
3,163,151 + Pf6N2E2_2674 0.83 -1.6
3,163,204 - -0.7
3,163,292 + -0.5
3,163,293 - -0.0
3,163,293 - -0.3
3,163,373 + +0.3
3,163,373 + -1.6
3,163,373 + -2.0
3,163,373 + +0.1
3,163,373 + -0.2
3,163,374 - +0.6
3,163,393 - +0.6
3,163,657 - Pf6N2E2_2675 0.16 -0.7

Or see this region's nucleotide sequence