Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2468 and Pf6N2E2_2469 are separated by 51 nucleotides Pf6N2E2_2469 and Pf6N2E2_2470 are separated by 16 nucleotides Pf6N2E2_2470 and Pf6N2E2_2471 are separated by 164 nucleotides Pf6N2E2_2471 and Pf6N2E2_2472 are separated by 202 nucleotides
Pf6N2E2_2468 - 2-dehydropantoate 2-reductase (EC 1.1.1.169), at 2,917,084 to 2,918,037
_2468
Pf6N2E2_2469 - hypothetical protein, at 2,918,089 to 2,918,289
_2469
Pf6N2E2_2470 - 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54), at 2,918,306 to 2,919,382
_2470
Pf6N2E2_2471 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 2,919,547 to 2,919,828
_2471
Pf6N2E2_2472 - hypothetical protein, at 2,920,031 to 2,920,144
_2472
Position (kb)
2918
2919
2920 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2917.365 kb on + strand, within Pf6N2E2_2468 at 2917.392 kb on + strand, within Pf6N2E2_2468 at 2917.425 kb on - strand, within Pf6N2E2_2468 at 2917.425 kb on - strand, within Pf6N2E2_2468 at 2917.425 kb on - strand, within Pf6N2E2_2468 at 2918.056 kb on - strand at 2918.073 kb on + strand at 2918.073 kb on + strand at 2918.073 kb on + strand at 2918.107 kb on + strand at 2918.107 kb on + strand at 2918.107 kb on + strand at 2918.107 kb on + strand at 2918.107 kb on + strand at 2918.107 kb on + strand at 2918.107 kb on + strand at 2918.107 kb on + strand at 2918.108 kb on - strand at 2918.108 kb on - strand at 2918.161 kb on + strand, within Pf6N2E2_2469 at 2918.162 kb on - strand, within Pf6N2E2_2469 at 2918.162 kb on - strand, within Pf6N2E2_2469 at 2918.163 kb on + strand, within Pf6N2E2_2469 at 2918.172 kb on - strand, within Pf6N2E2_2469 at 2918.238 kb on - strand, within Pf6N2E2_2469 at 2918.238 kb on - strand, within Pf6N2E2_2469 at 2918.300 kb on - strand at 2918.333 kb on - strand at 2918.523 kb on - strand, within Pf6N2E2_2470 at 2918.570 kb on + strand, within Pf6N2E2_2470 at 2918.570 kb on + strand, within Pf6N2E2_2470 at 2918.570 kb on + strand, within Pf6N2E2_2470 at 2918.570 kb on + strand, within Pf6N2E2_2470 at 2918.571 kb on - strand, within Pf6N2E2_2470 at 2918.571 kb on - strand, within Pf6N2E2_2470 at 2918.588 kb on + strand, within Pf6N2E2_2470 at 2918.588 kb on + strand, within Pf6N2E2_2470 at 2918.588 kb on + strand, within Pf6N2E2_2470 at 2918.589 kb on - strand, within Pf6N2E2_2470 at 2918.642 kb on + strand, within Pf6N2E2_2470 at 2918.642 kb on + strand, within Pf6N2E2_2470 at 2918.762 kb on + strand, within Pf6N2E2_2470 at 2918.762 kb on + strand, within Pf6N2E2_2470 at 2918.762 kb on + strand, within Pf6N2E2_2470 at 2918.762 kb on + strand, within Pf6N2E2_2470 at 2918.763 kb on - strand, within Pf6N2E2_2470 at 2918.763 kb on - strand, within Pf6N2E2_2470 at 2918.763 kb on - strand, within Pf6N2E2_2470 at 2918.763 kb on - strand, within Pf6N2E2_2470 at 2918.990 kb on + strand, within Pf6N2E2_2470 at 2918.991 kb on - strand, within Pf6N2E2_2470 at 2919.032 kb on + strand, within Pf6N2E2_2470 at 2919.033 kb on - strand, within Pf6N2E2_2470 at 2919.033 kb on - strand, within Pf6N2E2_2470 at 2919.272 kb on + strand, within Pf6N2E2_2470 at 2919.273 kb on - strand, within Pf6N2E2_2470 at 2919.417 kb on + strand at 2919.417 kb on + strand at 2919.417 kb on + strand at 2919.417 kb on + strand at 2919.418 kb on - strand at 2919.418 kb on - strand at 2919.451 kb on + strand at 2919.451 kb on + strand at 2919.451 kb on + strand at 2919.451 kb on + strand at 2919.452 kb on - strand at 2919.452 kb on - strand at 2919.452 kb on - strand at 2919.452 kb on - strand at 2919.478 kb on + strand at 2919.495 kb on - strand at 2919.584 kb on + strand, within Pf6N2E2_2471 at 2919.584 kb on + strand, within Pf6N2E2_2471 at 2919.584 kb on + strand, within Pf6N2E2_2471 at 2919.585 kb on - strand, within Pf6N2E2_2471 at 2919.585 kb on - strand, within Pf6N2E2_2471 at 2919.585 kb on - strand, within Pf6N2E2_2471 at 2919.585 kb on - strand, within Pf6N2E2_2471 at 2919.596 kb on + strand, within Pf6N2E2_2471 at 2919.596 kb on + strand, within Pf6N2E2_2471 at 2919.596 kb on + strand, within Pf6N2E2_2471 at 2919.596 kb on + strand, within Pf6N2E2_2471 at 2919.597 kb on - strand, within Pf6N2E2_2471 at 2919.597 kb on - strand, within Pf6N2E2_2471 at 2919.597 kb on - strand, within Pf6N2E2_2471 at 2919.639 kb on - strand, within Pf6N2E2_2471 at 2919.639 kb on - strand, within Pf6N2E2_2471 at 2919.639 kb on - strand, within Pf6N2E2_2471 at 2919.710 kb on + strand, within Pf6N2E2_2471 at 2919.711 kb on - strand, within Pf6N2E2_2471 at 2919.711 kb on - strand, within Pf6N2E2_2471 at 2919.711 kb on - strand, within Pf6N2E2_2471 at 2919.715 kb on - strand, within Pf6N2E2_2471 at 2919.743 kb on + strand, within Pf6N2E2_2471 at 2919.743 kb on + strand, within Pf6N2E2_2471 at 2919.743 kb on + strand, within Pf6N2E2_2471 at 2919.744 kb on - strand, within Pf6N2E2_2471 at 2919.744 kb on - strand, within Pf6N2E2_2471 at 2919.744 kb on - strand, within Pf6N2E2_2471 at 2919.744 kb on - strand, within Pf6N2E2_2471 at 2919.744 kb on - strand, within Pf6N2E2_2471 at 2919.744 kb on - strand, within Pf6N2E2_2471 at 2919.744 kb on - strand, within Pf6N2E2_2471 at 2919.744 kb on - strand, within Pf6N2E2_2471 at 2919.744 kb on - strand, within Pf6N2E2_2471 at 2919.744 kb on - strand, within Pf6N2E2_2471 at 2919.753 kb on - strand, within Pf6N2E2_2471 at 2919.832 kb on + strand at 2919.833 kb on - strand at 2919.861 kb on + strand at 2919.861 kb on + strand at 2919.867 kb on - strand at 2919.895 kb on + strand at 2919.895 kb on + strand at 2919.895 kb on + strand at 2919.895 kb on + strand at 2919.896 kb on - strand at 2919.896 kb on - strand at 2919.896 kb on - strand at 2919.896 kb on - strand at 2919.896 kb on - strand at 2919.896 kb on - strand at 2919.896 kb on - strand at 2919.896 kb on - strand at 2919.896 kb on - strand at 2919.965 kb on + strand at 2919.965 kb on + strand at 2919.965 kb on + strand at 2919.965 kb on + strand at 2919.966 kb on - strand at 2919.966 kb on - strand at 2919.966 kb on - strand at 2919.968 kb on + strand at 2919.968 kb on + strand at 2919.968 kb on + strand at 2919.968 kb on + strand at 2919.969 kb on - strand at 2920.059 kb on + strand, within Pf6N2E2_2472 at 2920.060 kb on - strand, within Pf6N2E2_2472 at 2920.077 kb on + strand, within Pf6N2E2_2472 at 2920.078 kb on - strand, within Pf6N2E2_2472 at 2920.121 kb on - strand, within Pf6N2E2_2472 at 2920.124 kb on + strand, within Pf6N2E2_2472 at 2920.125 kb on - strand, within Pf6N2E2_2472 at 2920.139 kb on + strand at 2920.139 kb on + strand at 2920.140 kb on - strand at 2920.224 kb on + strand at 2920.224 kb on + strand at 2920.225 kb on - strand at 2920.373 kb on - strand at 2920.376 kb on + strand at 2920.376 kb on + strand at 2920.377 kb on - strand at 2920.379 kb on + strand at 2920.379 kb on + strand at 2920.379 kb on + strand at 2920.380 kb on - strand at 2920.380 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 2,917,365 + Pf6N2E2_2468 0.29 +0.5 2,917,392 + Pf6N2E2_2468 0.32 +0.3 2,917,425 - Pf6N2E2_2468 0.36 +1.8 2,917,425 - Pf6N2E2_2468 0.36 +0.9 2,917,425 - Pf6N2E2_2468 0.36 +2.2 2,918,056 - +1.3 2,918,073 + +0.3 2,918,073 + -0.4 2,918,073 + -0.9 2,918,107 + +1.5 2,918,107 + +0.3 2,918,107 + +0.1 2,918,107 + +0.5 2,918,107 + +0.5 2,918,107 + +0.3 2,918,107 + -0.5 2,918,107 + +0.9 2,918,108 - +0.6 2,918,108 - +2.3 2,918,161 + Pf6N2E2_2469 0.36 -0.3 2,918,162 - Pf6N2E2_2469 0.36 +1.5 2,918,162 - Pf6N2E2_2469 0.36 +2.0 2,918,163 + Pf6N2E2_2469 0.37 +0.2 2,918,172 - Pf6N2E2_2469 0.41 +2.0 2,918,238 - Pf6N2E2_2469 0.74 +2.7 2,918,238 - Pf6N2E2_2469 0.74 +1.7 2,918,300 - +2.5 2,918,333 - +2.9 2,918,523 - Pf6N2E2_2470 0.20 +1.6 2,918,570 + Pf6N2E2_2470 0.25 +1.1 2,918,570 + Pf6N2E2_2470 0.25 +1.0 2,918,570 + Pf6N2E2_2470 0.25 -0.3 2,918,570 + Pf6N2E2_2470 0.25 +0.6 2,918,571 - Pf6N2E2_2470 0.25 +1.7 2,918,571 - Pf6N2E2_2470 0.25 +2.7 2,918,588 + Pf6N2E2_2470 0.26 +1.5 2,918,588 + Pf6N2E2_2470 0.26 +0.4 2,918,588 + Pf6N2E2_2470 0.26 +0.3 2,918,589 - Pf6N2E2_2470 0.26 +1.8 2,918,642 + Pf6N2E2_2470 0.31 -0.2 2,918,642 + Pf6N2E2_2470 0.31 +0.0 2,918,762 + Pf6N2E2_2470 0.42 +0.0 2,918,762 + Pf6N2E2_2470 0.42 +0.1 2,918,762 + Pf6N2E2_2470 0.42 +0.2 2,918,762 + Pf6N2E2_2470 0.42 +0.4 2,918,763 - Pf6N2E2_2470 0.42 +0.6 2,918,763 - Pf6N2E2_2470 0.42 +0.2 2,918,763 - Pf6N2E2_2470 0.42 +1.3 2,918,763 - Pf6N2E2_2470 0.42 +0.6 2,918,990 + Pf6N2E2_2470 0.64 +0.7 2,918,991 - Pf6N2E2_2470 0.64 +1.2 2,919,032 + Pf6N2E2_2470 0.67 +1.5 2,919,033 - Pf6N2E2_2470 0.68 +0.9 2,919,033 - Pf6N2E2_2470 0.68 +1.9 2,919,272 + Pf6N2E2_2470 0.90 +0.2 2,919,273 - Pf6N2E2_2470 0.90 +2.2 2,919,417 + +0.6 2,919,417 + +0.6 2,919,417 + +0.3 2,919,417 + +0.1 2,919,418 - +1.3 2,919,418 - +2.4 2,919,451 + -0.2 2,919,451 + +0.7 2,919,451 + +0.4 2,919,451 + +1.6 2,919,452 - +2.8 2,919,452 - +1.8 2,919,452 - +1.6 2,919,452 - +1.7 2,919,478 + -0.5 2,919,495 - +3.0 2,919,584 + Pf6N2E2_2471 0.13 +0.0 2,919,584 + Pf6N2E2_2471 0.13 +0.1 2,919,584 + Pf6N2E2_2471 0.13 -2.5 2,919,585 - Pf6N2E2_2471 0.13 +1.2 2,919,585 - Pf6N2E2_2471 0.13 +0.4 2,919,585 - Pf6N2E2_2471 0.13 +1.3 2,919,585 - Pf6N2E2_2471 0.13 +1.7 2,919,596 + Pf6N2E2_2471 0.17 -0.2 2,919,596 + Pf6N2E2_2471 0.17 -0.4 2,919,596 + Pf6N2E2_2471 0.17 -0.8 2,919,596 + Pf6N2E2_2471 0.17 +0.3 2,919,597 - Pf6N2E2_2471 0.18 +1.6 2,919,597 - Pf6N2E2_2471 0.18 +0.8 2,919,597 - Pf6N2E2_2471 0.18 +1.7 2,919,639 - Pf6N2E2_2471 0.33 +1.0 2,919,639 - Pf6N2E2_2471 0.33 +0.9 2,919,639 - Pf6N2E2_2471 0.33 +1.1 2,919,710 + Pf6N2E2_2471 0.58 -2.5 2,919,711 - Pf6N2E2_2471 0.58 +1.1 2,919,711 - Pf6N2E2_2471 0.58 +1.2 2,919,711 - Pf6N2E2_2471 0.58 +1.1 2,919,715 - Pf6N2E2_2471 0.60 +1.1 2,919,743 + Pf6N2E2_2471 0.70 -0.8 2,919,743 + Pf6N2E2_2471 0.70 -0.0 2,919,743 + Pf6N2E2_2471 0.70 -0.4 2,919,744 - Pf6N2E2_2471 0.70 +0.5 2,919,744 - Pf6N2E2_2471 0.70 +1.5 2,919,744 - Pf6N2E2_2471 0.70 +1.5 2,919,744 - Pf6N2E2_2471 0.70 +1.3 2,919,744 - Pf6N2E2_2471 0.70 +2.1 2,919,744 - Pf6N2E2_2471 0.70 +2.9 2,919,744 - Pf6N2E2_2471 0.70 +1.5 2,919,744 - Pf6N2E2_2471 0.70 +1.1 2,919,744 - Pf6N2E2_2471 0.70 +1.3 2,919,744 - Pf6N2E2_2471 0.70 +1.7 2,919,753 - Pf6N2E2_2471 0.73 +1.4 2,919,832 + +0.5 2,919,833 - +2.5 2,919,861 + +0.3 2,919,861 + +0.9 2,919,867 - +3.3 2,919,895 + -1.0 2,919,895 + +0.2 2,919,895 + +1.2 2,919,895 + -0.4 2,919,896 - +1.8 2,919,896 - +2.2 2,919,896 - +1.7 2,919,896 - +2.7 2,919,896 - +3.6 2,919,896 - +2.2 2,919,896 - +4.0 2,919,896 - +3.1 2,919,896 - +2.8 2,919,965 + +0.6 2,919,965 + -0.5 2,919,965 + -0.6 2,919,965 + -0.7 2,919,966 - +2.2 2,919,966 - +2.2 2,919,966 - +2.9 2,919,968 + +0.0 2,919,968 + -0.2 2,919,968 + -0.2 2,919,968 + +0.9 2,919,969 - +2.6 2,920,059 + Pf6N2E2_2472 0.25 -1.0 2,920,060 - Pf6N2E2_2472 0.25 +3.3 2,920,077 + Pf6N2E2_2472 0.40 +0.8 2,920,078 - Pf6N2E2_2472 0.41 +2.2 2,920,121 - Pf6N2E2_2472 0.79 +3.3 2,920,124 + Pf6N2E2_2472 0.82 +0.3 2,920,125 - Pf6N2E2_2472 0.82 +2.7 2,920,139 + -1.0 2,920,139 + -0.3 2,920,140 - +3.0 2,920,224 + +0.5 2,920,224 + -1.0 2,920,225 - +2.0 2,920,373 - +2.9 2,920,376 + +2.5 2,920,376 + +2.3 2,920,377 - +1.3 2,920,379 + +2.6 2,920,379 + +2.1 2,920,379 + +1.6 2,920,380 - +1.6 2,920,380 - +1.1
Or see this region's nucleotide sequence