Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1965 and Pf6N2E2_1966 are separated by 841 nucleotides Pf6N2E2_1966 and Pf6N2E2_1967 are separated by 452 nucleotides
Pf6N2E2_1965 - Fructokinase (EC 2.7.1.4) (from data) , at 2,330,391 to 2,331,311
_1965
Pf6N2E2_1966 - SAM-dependent methyltransferases, at 2,332,153 to 2,332,833
_1966
Pf6N2E2_1967 - Cobalt-zinc-cadmium resistance protein, at 2,333,286 to 2,333,915
_1967
Position (kb)
2332
2333 Strain fitness (log2 ratio)
-2
-1
0
1 at 2331.173 kb on - strand, within Pf6N2E2_1965 at 2331.564 kb on + strand at 2331.570 kb on + strand at 2331.572 kb on + strand at 2331.642 kb on + strand at 2331.643 kb on - strand at 2331.643 kb on - strand at 2331.707 kb on + strand at 2331.726 kb on - strand at 2331.726 kb on - strand at 2331.726 kb on - strand at 2331.786 kb on + strand at 2331.787 kb on - strand at 2331.835 kb on + strand at 2331.836 kb on - strand at 2331.899 kb on - strand at 2331.911 kb on + strand at 2331.911 kb on + strand at 2331.914 kb on - strand at 2331.929 kb on + strand at 2331.929 kb on + strand at 2331.930 kb on - strand at 2332.102 kb on + strand at 2332.103 kb on - strand at 2332.103 kb on - strand at 2332.213 kb on + strand at 2332.217 kb on + strand at 2332.217 kb on + strand at 2332.218 kb on - strand at 2332.593 kb on + strand, within Pf6N2E2_1966 at 2332.611 kb on + strand, within Pf6N2E2_1966 at 2332.611 kb on + strand, within Pf6N2E2_1966 at 2332.612 kb on - strand, within Pf6N2E2_1966 at 2332.716 kb on - strand, within Pf6N2E2_1966 at 2332.785 kb on + strand at 2332.795 kb on + strand at 2332.817 kb on + strand at 2332.854 kb on + strand at 2332.854 kb on + strand at 2332.927 kb on + strand at 2332.928 kb on - strand at 2332.951 kb on + strand at 2332.951 kb on + strand at 2333.124 kb on - strand at 2333.124 kb on - strand at 2333.159 kb on - strand at 2333.193 kb on - strand at 2333.213 kb on - strand at 2333.213 kb on - strand at 2333.244 kb on + strand at 2333.245 kb on - strand at 2333.254 kb on + strand at 2333.254 kb on + strand at 2333.254 kb on + strand at 2333.254 kb on + strand at 2333.255 kb on - strand at 2333.255 kb on - strand at 2333.255 kb on - strand at 2333.255 kb on - strand at 2333.470 kb on + strand, within Pf6N2E2_1967 at 2333.470 kb on + strand, within Pf6N2E2_1967 at 2333.470 kb on + strand, within Pf6N2E2_1967 at 2333.471 kb on - strand, within Pf6N2E2_1967 at 2333.471 kb on - strand, within Pf6N2E2_1967 at 2333.479 kb on + strand, within Pf6N2E2_1967 at 2333.479 kb on + strand, within Pf6N2E2_1967 at 2333.479 kb on + strand, within Pf6N2E2_1967 at 2333.479 kb on + strand, within Pf6N2E2_1967 at 2333.479 kb on + strand, within Pf6N2E2_1967 at 2333.480 kb on - strand, within Pf6N2E2_1967 at 2333.499 kb on + strand, within Pf6N2E2_1967 at 2333.500 kb on - strand, within Pf6N2E2_1967 at 2333.562 kb on + strand, within Pf6N2E2_1967 at 2333.563 kb on - strand, within Pf6N2E2_1967 at 2333.647 kb on + strand, within Pf6N2E2_1967 at 2333.647 kb on + strand, within Pf6N2E2_1967 at 2333.647 kb on + strand, within Pf6N2E2_1967 at 2333.647 kb on + strand, within Pf6N2E2_1967 at 2333.647 kb on + strand, within Pf6N2E2_1967 at 2333.647 kb on + strand, within Pf6N2E2_1967 at 2333.648 kb on - strand, within Pf6N2E2_1967 at 2333.648 kb on - strand, within Pf6N2E2_1967 at 2333.648 kb on - strand, within Pf6N2E2_1967 at 2333.648 kb on - strand, within Pf6N2E2_1967 at 2333.648 kb on - strand, within Pf6N2E2_1967 at 2333.648 kb on - strand, within Pf6N2E2_1967 at 2333.801 kb on - strand, within Pf6N2E2_1967 at 2333.809 kb on + strand, within Pf6N2E2_1967
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 2,331,173 - Pf6N2E2_1965 0.85 +0.1 2,331,564 + -1.3 2,331,570 + +0.5 2,331,572 + -0.7 2,331,642 + +1.0 2,331,643 - -1.1 2,331,643 - +1.7 2,331,707 + +0.0 2,331,726 - +0.2 2,331,726 - +1.2 2,331,726 - +0.0 2,331,786 + +1.5 2,331,787 - +0.1 2,331,835 + +0.0 2,331,836 - +1.1 2,331,899 - -0.3 2,331,911 + +0.7 2,331,911 + +0.1 2,331,914 - -0.3 2,331,929 + +1.1 2,331,929 + -0.0 2,331,930 - +1.0 2,332,102 + -0.7 2,332,103 - +0.7 2,332,103 - +0.9 2,332,213 + -0.1 2,332,217 + +0.1 2,332,217 + +1.5 2,332,218 - +0.7 2,332,593 + Pf6N2E2_1966 0.65 -1.1 2,332,611 + Pf6N2E2_1966 0.67 -0.6 2,332,611 + Pf6N2E2_1966 0.67 -0.0 2,332,612 - Pf6N2E2_1966 0.67 -1.9 2,332,716 - Pf6N2E2_1966 0.83 -0.3 2,332,785 + +0.7 2,332,795 + +0.4 2,332,817 + +1.1 2,332,854 + +0.2 2,332,854 + +0.4 2,332,927 + +0.4 2,332,928 - +0.1 2,332,951 + +0.0 2,332,951 + +0.5 2,333,124 - -0.3 2,333,124 - +0.2 2,333,159 - -0.2 2,333,193 - -0.3 2,333,213 - -0.3 2,333,213 - +0.5 2,333,244 + +0.9 2,333,245 - -0.3 2,333,254 + +0.5 2,333,254 + -1.3 2,333,254 + +0.6 2,333,254 + -0.5 2,333,255 - +0.9 2,333,255 - +1.2 2,333,255 - -0.6 2,333,255 - -0.3 2,333,470 + Pf6N2E2_1967 0.29 -0.2 2,333,470 + Pf6N2E2_1967 0.29 -0.1 2,333,470 + Pf6N2E2_1967 0.29 +0.8 2,333,471 - Pf6N2E2_1967 0.29 +0.2 2,333,471 - Pf6N2E2_1967 0.29 -0.3 2,333,479 + Pf6N2E2_1967 0.31 +1.1 2,333,479 + Pf6N2E2_1967 0.31 +0.8 2,333,479 + Pf6N2E2_1967 0.31 -0.4 2,333,479 + Pf6N2E2_1967 0.31 +1.6 2,333,479 + Pf6N2E2_1967 0.31 +0.3 2,333,480 - Pf6N2E2_1967 0.31 -0.0 2,333,499 + Pf6N2E2_1967 0.34 -0.1 2,333,500 - Pf6N2E2_1967 0.34 +0.5 2,333,562 + Pf6N2E2_1967 0.44 -0.3 2,333,563 - Pf6N2E2_1967 0.44 +0.5 2,333,647 + Pf6N2E2_1967 0.57 -0.5 2,333,647 + Pf6N2E2_1967 0.57 -0.2 2,333,647 + Pf6N2E2_1967 0.57 +1.6 2,333,647 + Pf6N2E2_1967 0.57 -0.8 2,333,647 + Pf6N2E2_1967 0.57 +0.5 2,333,647 + Pf6N2E2_1967 0.57 +1.1 2,333,648 - Pf6N2E2_1967 0.57 +1.3 2,333,648 - Pf6N2E2_1967 0.57 -1.2 2,333,648 - Pf6N2E2_1967 0.57 +0.9 2,333,648 - Pf6N2E2_1967 0.57 +1.4 2,333,648 - Pf6N2E2_1967 0.57 +0.5 2,333,648 - Pf6N2E2_1967 0.57 +0.4 2,333,801 - Pf6N2E2_1967 0.82 +0.5 2,333,809 + Pf6N2E2_1967 0.83 +0.6
Or see this region's nucleotide sequence