Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1966

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1965 and Pf6N2E2_1966 are separated by 841 nucleotidesPf6N2E2_1966 and Pf6N2E2_1967 are separated by 452 nucleotides Pf6N2E2_1965 - Fructokinase (EC 2.7.1.4) (from data), at 2,330,391 to 2,331,311 _1965 Pf6N2E2_1966 - SAM-dependent methyltransferases, at 2,332,153 to 2,332,833 _1966 Pf6N2E2_1967 - Cobalt-zinc-cadmium resistance protein, at 2,333,286 to 2,333,915 _1967 Position (kb) 2332 2333Strain fitness (log2 ratio) -2 -1 0 1at 2331.173 kb on - strand, within Pf6N2E2_1965at 2331.564 kb on + strandat 2331.570 kb on + strandat 2331.572 kb on + strandat 2331.642 kb on + strandat 2331.643 kb on - strandat 2331.643 kb on - strandat 2331.707 kb on + strandat 2331.726 kb on - strandat 2331.726 kb on - strandat 2331.726 kb on - strandat 2331.786 kb on + strandat 2331.787 kb on - strandat 2331.835 kb on + strandat 2331.836 kb on - strandat 2331.899 kb on - strandat 2331.911 kb on + strandat 2331.911 kb on + strandat 2331.914 kb on - strandat 2331.929 kb on + strandat 2331.929 kb on + strandat 2331.930 kb on - strandat 2332.102 kb on + strandat 2332.103 kb on - strandat 2332.103 kb on - strandat 2332.213 kb on + strandat 2332.217 kb on + strandat 2332.217 kb on + strandat 2332.218 kb on - strandat 2332.593 kb on + strand, within Pf6N2E2_1966at 2332.611 kb on + strand, within Pf6N2E2_1966at 2332.611 kb on + strand, within Pf6N2E2_1966at 2332.612 kb on - strand, within Pf6N2E2_1966at 2332.716 kb on - strand, within Pf6N2E2_1966at 2332.785 kb on + strandat 2332.795 kb on + strandat 2332.817 kb on + strandat 2332.854 kb on + strandat 2332.854 kb on + strandat 2332.927 kb on + strandat 2332.928 kb on - strandat 2332.951 kb on + strandat 2332.951 kb on + strandat 2333.124 kb on - strandat 2333.124 kb on - strandat 2333.159 kb on - strandat 2333.193 kb on - strandat 2333.213 kb on - strandat 2333.213 kb on - strandat 2333.244 kb on + strandat 2333.245 kb on - strandat 2333.254 kb on + strandat 2333.254 kb on + strandat 2333.254 kb on + strandat 2333.254 kb on + strandat 2333.255 kb on - strandat 2333.255 kb on - strandat 2333.255 kb on - strandat 2333.255 kb on - strandat 2333.470 kb on + strand, within Pf6N2E2_1967at 2333.470 kb on + strand, within Pf6N2E2_1967at 2333.470 kb on + strand, within Pf6N2E2_1967at 2333.471 kb on - strand, within Pf6N2E2_1967at 2333.471 kb on - strand, within Pf6N2E2_1967at 2333.479 kb on + strand, within Pf6N2E2_1967at 2333.479 kb on + strand, within Pf6N2E2_1967at 2333.479 kb on + strand, within Pf6N2E2_1967at 2333.479 kb on + strand, within Pf6N2E2_1967at 2333.479 kb on + strand, within Pf6N2E2_1967at 2333.480 kb on - strand, within Pf6N2E2_1967at 2333.499 kb on + strand, within Pf6N2E2_1967at 2333.500 kb on - strand, within Pf6N2E2_1967at 2333.562 kb on + strand, within Pf6N2E2_1967at 2333.563 kb on - strand, within Pf6N2E2_1967at 2333.647 kb on + strand, within Pf6N2E2_1967at 2333.647 kb on + strand, within Pf6N2E2_1967at 2333.647 kb on + strand, within Pf6N2E2_1967at 2333.647 kb on + strand, within Pf6N2E2_1967at 2333.647 kb on + strand, within Pf6N2E2_1967at 2333.647 kb on + strand, within Pf6N2E2_1967at 2333.648 kb on - strand, within Pf6N2E2_1967at 2333.648 kb on - strand, within Pf6N2E2_1967at 2333.648 kb on - strand, within Pf6N2E2_1967at 2333.648 kb on - strand, within Pf6N2E2_1967at 2333.648 kb on - strand, within Pf6N2E2_1967at 2333.648 kb on - strand, within Pf6N2E2_1967at 2333.801 kb on - strand, within Pf6N2E2_1967at 2333.809 kb on + strand, within Pf6N2E2_1967

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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2,331,173 - Pf6N2E2_1965 0.85 +0.1
2,331,564 + -1.3
2,331,570 + +0.5
2,331,572 + -0.7
2,331,642 + +1.0
2,331,643 - -1.1
2,331,643 - +1.7
2,331,707 + +0.0
2,331,726 - +0.2
2,331,726 - +1.2
2,331,726 - +0.0
2,331,786 + +1.5
2,331,787 - +0.1
2,331,835 + +0.0
2,331,836 - +1.1
2,331,899 - -0.3
2,331,911 + +0.7
2,331,911 + +0.1
2,331,914 - -0.3
2,331,929 + +1.1
2,331,929 + -0.0
2,331,930 - +1.0
2,332,102 + -0.7
2,332,103 - +0.7
2,332,103 - +0.9
2,332,213 + -0.1
2,332,217 + +0.1
2,332,217 + +1.5
2,332,218 - +0.7
2,332,593 + Pf6N2E2_1966 0.65 -1.1
2,332,611 + Pf6N2E2_1966 0.67 -0.6
2,332,611 + Pf6N2E2_1966 0.67 -0.0
2,332,612 - Pf6N2E2_1966 0.67 -1.9
2,332,716 - Pf6N2E2_1966 0.83 -0.3
2,332,785 + +0.7
2,332,795 + +0.4
2,332,817 + +1.1
2,332,854 + +0.2
2,332,854 + +0.4
2,332,927 + +0.4
2,332,928 - +0.1
2,332,951 + +0.0
2,332,951 + +0.5
2,333,124 - -0.3
2,333,124 - +0.2
2,333,159 - -0.2
2,333,193 - -0.3
2,333,213 - -0.3
2,333,213 - +0.5
2,333,244 + +0.9
2,333,245 - -0.3
2,333,254 + +0.5
2,333,254 + -1.3
2,333,254 + +0.6
2,333,254 + -0.5
2,333,255 - +0.9
2,333,255 - +1.2
2,333,255 - -0.6
2,333,255 - -0.3
2,333,470 + Pf6N2E2_1967 0.29 -0.2
2,333,470 + Pf6N2E2_1967 0.29 -0.1
2,333,470 + Pf6N2E2_1967 0.29 +0.8
2,333,471 - Pf6N2E2_1967 0.29 +0.2
2,333,471 - Pf6N2E2_1967 0.29 -0.3
2,333,479 + Pf6N2E2_1967 0.31 +1.1
2,333,479 + Pf6N2E2_1967 0.31 +0.8
2,333,479 + Pf6N2E2_1967 0.31 -0.4
2,333,479 + Pf6N2E2_1967 0.31 +1.6
2,333,479 + Pf6N2E2_1967 0.31 +0.3
2,333,480 - Pf6N2E2_1967 0.31 -0.0
2,333,499 + Pf6N2E2_1967 0.34 -0.1
2,333,500 - Pf6N2E2_1967 0.34 +0.5
2,333,562 + Pf6N2E2_1967 0.44 -0.3
2,333,563 - Pf6N2E2_1967 0.44 +0.5
2,333,647 + Pf6N2E2_1967 0.57 -0.5
2,333,647 + Pf6N2E2_1967 0.57 -0.2
2,333,647 + Pf6N2E2_1967 0.57 +1.6
2,333,647 + Pf6N2E2_1967 0.57 -0.8
2,333,647 + Pf6N2E2_1967 0.57 +0.5
2,333,647 + Pf6N2E2_1967 0.57 +1.1
2,333,648 - Pf6N2E2_1967 0.57 +1.3
2,333,648 - Pf6N2E2_1967 0.57 -1.2
2,333,648 - Pf6N2E2_1967 0.57 +0.9
2,333,648 - Pf6N2E2_1967 0.57 +1.4
2,333,648 - Pf6N2E2_1967 0.57 +0.5
2,333,648 - Pf6N2E2_1967 0.57 +0.4
2,333,801 - Pf6N2E2_1967 0.82 +0.5
2,333,809 + Pf6N2E2_1967 0.83 +0.6

Or see this region's nucleotide sequence