Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1947

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1945 and Pf6N2E2_1946 overlap by 4 nucleotidesPf6N2E2_1946 and Pf6N2E2_1947 overlap by 29 nucleotidesPf6N2E2_1947 and Pf6N2E2_1948 are separated by 925 nucleotides Pf6N2E2_1945 - Pyrroloquinoline-quinone synthase (EC 1.3.3.11), at 2,306,594 to 2,307,346 _1945 Pf6N2E2_1946 - Coenzyme PQQ synthesis protein D, at 2,307,343 to 2,307,618 _1946 Pf6N2E2_1947 - Coenzyme PQQ synthesis protein E, at 2,307,590 to 2,308,759 _1947 Pf6N2E2_1948 - RND efflux system, outer membrane lipoprotein CmeC, at 2,309,685 to 2,311,109 _1948 Position (kb) 2307 2308 2309Strain fitness (log2 ratio) -2 -1 0 1 2at 2306.654 kb on + strandat 2306.657 kb on + strandat 2306.690 kb on + strand, within Pf6N2E2_1945at 2306.690 kb on + strand, within Pf6N2E2_1945at 2306.690 kb on + strand, within Pf6N2E2_1945at 2306.690 kb on + strand, within Pf6N2E2_1945at 2306.690 kb on + strand, within Pf6N2E2_1945at 2306.690 kb on + strand, within Pf6N2E2_1945at 2306.691 kb on - strand, within Pf6N2E2_1945at 2306.691 kb on - strand, within Pf6N2E2_1945at 2306.691 kb on - strand, within Pf6N2E2_1945at 2306.691 kb on - strand, within Pf6N2E2_1945at 2306.691 kb on - strand, within Pf6N2E2_1945at 2306.691 kb on - strand, within Pf6N2E2_1945at 2306.691 kb on - strand, within Pf6N2E2_1945at 2306.691 kb on - strand, within Pf6N2E2_1945at 2306.691 kb on - strand, within Pf6N2E2_1945at 2306.748 kb on - strand, within Pf6N2E2_1945at 2306.941 kb on - strand, within Pf6N2E2_1945at 2306.972 kb on + strandat 2307.113 kb on + strand, within Pf6N2E2_1945at 2307.114 kb on - strand, within Pf6N2E2_1945at 2307.114 kb on - strand, within Pf6N2E2_1945at 2307.114 kb on - strand, within Pf6N2E2_1945at 2307.114 kb on - strand, within Pf6N2E2_1945at 2307.114 kb on - strand, within Pf6N2E2_1945at 2307.114 kb on - strand, within Pf6N2E2_1945at 2307.169 kb on + strand, within Pf6N2E2_1945at 2307.182 kb on + strand, within Pf6N2E2_1945at 2307.183 kb on - strand, within Pf6N2E2_1945at 2307.183 kb on - strand, within Pf6N2E2_1945at 2307.183 kb on - strand, within Pf6N2E2_1945at 2307.183 kb on - strand, within Pf6N2E2_1945at 2307.183 kb on - strand, within Pf6N2E2_1945at 2307.296 kb on + strandat 2307.337 kb on + strandat 2307.337 kb on + strandat 2307.338 kb on - strandat 2307.338 kb on - strandat 2307.343 kb on - strandat 2307.343 kb on - strandat 2307.683 kb on + strandat 2307.707 kb on + strand, within Pf6N2E2_1947at 2307.708 kb on - strand, within Pf6N2E2_1947at 2307.887 kb on + strand, within Pf6N2E2_1947at 2307.887 kb on + strand, within Pf6N2E2_1947at 2307.887 kb on + strand, within Pf6N2E2_1947at 2307.887 kb on + strand, within Pf6N2E2_1947at 2307.888 kb on - strand, within Pf6N2E2_1947at 2307.888 kb on - strand, within Pf6N2E2_1947at 2308.248 kb on + strand, within Pf6N2E2_1947at 2308.636 kb on + strand, within Pf6N2E2_1947at 2308.637 kb on - strand, within Pf6N2E2_1947at 2308.639 kb on + strand, within Pf6N2E2_1947at 2308.689 kb on - strandat 2308.689 kb on - strandat 2308.797 kb on - strandat 2308.833 kb on - strandat 2308.895 kb on + strandat 2308.951 kb on - strandat 2309.078 kb on + strandat 2309.110 kb on - strandat 2309.132 kb on + strandat 2309.204 kb on + strandat 2309.204 kb on + strandat 2309.247 kb on + strandat 2309.351 kb on + strandat 2309.351 kb on + strandat 2309.368 kb on - strandat 2309.368 kb on - strandat 2309.389 kb on - strandat 2309.437 kb on + strandat 2309.481 kb on + strandat 2309.526 kb on + strandat 2309.593 kb on + strandat 2309.600 kb on + strandat 2309.600 kb on + strandat 2309.604 kb on + strandat 2309.604 kb on + strandat 2309.694 kb on - strandat 2309.735 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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2,306,654 + +0.7
2,306,657 + +1.4
2,306,690 + Pf6N2E2_1945 0.13 +0.7
2,306,690 + Pf6N2E2_1945 0.13 -0.1
2,306,690 + Pf6N2E2_1945 0.13 -0.4
2,306,690 + Pf6N2E2_1945 0.13 -1.1
2,306,690 + Pf6N2E2_1945 0.13 -0.6
2,306,690 + Pf6N2E2_1945 0.13 +1.4
2,306,691 - Pf6N2E2_1945 0.13 +0.0
2,306,691 - Pf6N2E2_1945 0.13 -0.6
2,306,691 - Pf6N2E2_1945 0.13 +0.4
2,306,691 - Pf6N2E2_1945 0.13 +0.4
2,306,691 - Pf6N2E2_1945 0.13 +0.2
2,306,691 - Pf6N2E2_1945 0.13 +1.1
2,306,691 - Pf6N2E2_1945 0.13 -0.1
2,306,691 - Pf6N2E2_1945 0.13 -0.3
2,306,691 - Pf6N2E2_1945 0.13 -0.1
2,306,748 - Pf6N2E2_1945 0.20 +1.0
2,306,941 - Pf6N2E2_1945 0.46 +1.6
2,306,972 + -0.9
2,307,113 + Pf6N2E2_1945 0.69 +1.9
2,307,114 - Pf6N2E2_1945 0.69 +1.2
2,307,114 - Pf6N2E2_1945 0.69 -0.4
2,307,114 - Pf6N2E2_1945 0.69 +0.8
2,307,114 - Pf6N2E2_1945 0.69 +1.6
2,307,114 - Pf6N2E2_1945 0.69 +0.5
2,307,114 - Pf6N2E2_1945 0.69 -1.1
2,307,169 + Pf6N2E2_1945 0.76 +0.1
2,307,182 + Pf6N2E2_1945 0.78 -0.2
2,307,183 - Pf6N2E2_1945 0.78 -0.7
2,307,183 - Pf6N2E2_1945 0.78 -0.3
2,307,183 - Pf6N2E2_1945 0.78 +0.7
2,307,183 - Pf6N2E2_1945 0.78 -1.2
2,307,183 - Pf6N2E2_1945 0.78 +0.1
2,307,296 + +0.5
2,307,337 + +0.2
2,307,337 + -1.5
2,307,338 - +0.6
2,307,338 - +0.9
2,307,343 - -0.4
2,307,343 - +0.3
2,307,683 + -0.2
2,307,707 + Pf6N2E2_1947 0.10 +1.2
2,307,708 - Pf6N2E2_1947 0.10 -1.7
2,307,887 + Pf6N2E2_1947 0.25 -1.0
2,307,887 + Pf6N2E2_1947 0.25 +1.1
2,307,887 + Pf6N2E2_1947 0.25 -0.2
2,307,887 + Pf6N2E2_1947 0.25 -1.0
2,307,888 - Pf6N2E2_1947 0.25 -1.0
2,307,888 - Pf6N2E2_1947 0.25 -1.8
2,308,248 + Pf6N2E2_1947 0.56 -1.2
2,308,636 + Pf6N2E2_1947 0.89 +0.6
2,308,637 - Pf6N2E2_1947 0.89 +1.0
2,308,639 + Pf6N2E2_1947 0.90 -0.0
2,308,689 - +0.3
2,308,689 - -0.3
2,308,797 - +0.7
2,308,833 - +0.7
2,308,895 + +1.7
2,308,951 - -0.5
2,309,078 + +0.5
2,309,110 - +0.1
2,309,132 + +0.5
2,309,204 + +0.3
2,309,204 + +0.2
2,309,247 + +0.3
2,309,351 + -0.5
2,309,351 + -0.5
2,309,368 - +0.4
2,309,368 - -0.1
2,309,389 - +0.7
2,309,437 + -2.2
2,309,481 + -0.3
2,309,526 + +0.1
2,309,593 + -1.2
2,309,600 + -0.1
2,309,600 + +1.5
2,309,604 + -1.0
2,309,604 + -1.1
2,309,694 - +0.2
2,309,735 - +0.2

Or see this region's nucleotide sequence