Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1278 and Pf6N2E2_1279 are separated by 213 nucleotides Pf6N2E2_1279 and Pf6N2E2_1280 overlap by 4 nucleotides Pf6N2E2_1280 and Pf6N2E2_1281 are separated by 22 nucleotides
Pf6N2E2_1278 - transcriptional regulator, MerR family, at 1,508,176 to 1,509,156
_1278
Pf6N2E2_1279 - Putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor associated with VreARI signaling system, at 1,509,370 to 1,510,314
_1279
Pf6N2E2_1280 - FIG00958542: hypothetical protein, at 1,510,311 to 1,510,790
_1280
Pf6N2E2_1281 - ATPase involved in DNA repair, at 1,510,813 to 1,511,460
_1281
Position (kb) 1509
1510
1511 Strain fitness (log2 ratio) -2
-1
0
1 at 1508.408 kb on + strand, within Pf6N2E2_1278 at 1508.409 kb on - strand, within Pf6N2E2_1278 at 1508.446 kb on + strand, within Pf6N2E2_1278 at 1508.446 kb on + strand, within Pf6N2E2_1278 at 1508.447 kb on - strand, within Pf6N2E2_1278 at 1508.447 kb on - strand, within Pf6N2E2_1278 at 1508.447 kb on - strand, within Pf6N2E2_1278 at 1508.510 kb on + strand, within Pf6N2E2_1278 at 1508.510 kb on + strand, within Pf6N2E2_1278 at 1508.510 kb on + strand, within Pf6N2E2_1278 at 1508.510 kb on + strand, within Pf6N2E2_1278 at 1508.510 kb on + strand, within Pf6N2E2_1278 at 1508.511 kb on - strand, within Pf6N2E2_1278 at 1508.511 kb on - strand, within Pf6N2E2_1278 at 1508.511 kb on - strand, within Pf6N2E2_1278 at 1508.559 kb on - strand, within Pf6N2E2_1278 at 1508.582 kb on + strand, within Pf6N2E2_1278 at 1508.582 kb on + strand, within Pf6N2E2_1278 at 1508.583 kb on - strand, within Pf6N2E2_1278 at 1508.583 kb on - strand, within Pf6N2E2_1278 at 1508.583 kb on - strand, within Pf6N2E2_1278 at 1508.583 kb on - strand, within Pf6N2E2_1278 at 1508.583 kb on - strand, within Pf6N2E2_1278 at 1508.857 kb on - strand, within Pf6N2E2_1278 at 1509.063 kb on + strand at 1509.177 kb on + strand at 1509.183 kb on + strand at 1509.183 kb on + strand at 1509.184 kb on - strand at 1509.372 kb on - strand at 1509.449 kb on + strand at 1509.876 kb on - strand, within Pf6N2E2_1279 at 1509.876 kb on - strand, within Pf6N2E2_1279 at 1509.939 kb on - strand, within Pf6N2E2_1279 at 1510.399 kb on + strand, within Pf6N2E2_1280 at 1510.771 kb on + strand at 1510.771 kb on + strand at 1510.772 kb on - strand at 1510.772 kb on - strand at 1510.856 kb on + strand at 1510.856 kb on + strand at 1510.857 kb on - strand at 1510.961 kb on + strand, within Pf6N2E2_1281 at 1510.962 kb on - strand, within Pf6N2E2_1281 at 1511.109 kb on - strand, within Pf6N2E2_1281 at 1511.109 kb on - strand, within Pf6N2E2_1281
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 1,508,408 + Pf6N2E2_1278 0.24 -0.3 1,508,409 - Pf6N2E2_1278 0.24 +0.2 1,508,446 + Pf6N2E2_1278 0.28 +1.2 1,508,446 + Pf6N2E2_1278 0.28 -0.3 1,508,447 - Pf6N2E2_1278 0.28 -0.2 1,508,447 - Pf6N2E2_1278 0.28 -0.6 1,508,447 - Pf6N2E2_1278 0.28 +0.4 1,508,510 + Pf6N2E2_1278 0.34 +1.2 1,508,510 + Pf6N2E2_1278 0.34 -0.1 1,508,510 + Pf6N2E2_1278 0.34 -0.1 1,508,510 + Pf6N2E2_1278 0.34 +0.1 1,508,510 + Pf6N2E2_1278 0.34 +0.4 1,508,511 - Pf6N2E2_1278 0.34 +0.4 1,508,511 - Pf6N2E2_1278 0.34 -0.1 1,508,511 - Pf6N2E2_1278 0.34 -0.4 1,508,559 - Pf6N2E2_1278 0.39 -0.1 1,508,582 + Pf6N2E2_1278 0.41 -0.2 1,508,582 + Pf6N2E2_1278 0.41 -0.0 1,508,583 - Pf6N2E2_1278 0.41 +0.9 1,508,583 - Pf6N2E2_1278 0.41 +0.4 1,508,583 - Pf6N2E2_1278 0.41 -0.1 1,508,583 - Pf6N2E2_1278 0.41 -0.4 1,508,583 - Pf6N2E2_1278 0.41 +0.2 1,508,857 - Pf6N2E2_1278 0.69 -0.9 1,509,063 + -0.7 1,509,177 + -0.4 1,509,183 + +0.5 1,509,183 + -0.9 1,509,184 - -0.3 1,509,372 - +0.4 1,509,449 + +0.3 1,509,876 - Pf6N2E2_1279 0.54 -0.9 1,509,876 - Pf6N2E2_1279 0.54 -0.3 1,509,939 - Pf6N2E2_1279 0.60 -0.9 1,510,399 + Pf6N2E2_1280 0.18 -1.1 1,510,771 + -0.7 1,510,771 + -0.2 1,510,772 - +1.0 1,510,772 - +0.2 1,510,856 + -2.4 1,510,856 + -0.1 1,510,857 - +1.0 1,510,961 + Pf6N2E2_1281 0.23 -0.1 1,510,962 - Pf6N2E2_1281 0.23 +0.6 1,511,109 - Pf6N2E2_1281 0.46 +0.3 1,511,109 - Pf6N2E2_1281 0.46 -1.0
Or see this region's nucleotide sequence