Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5955 and Pf1N1B4_5956 are separated by 9 nucleotides Pf1N1B4_5956 and Pf1N1B4_5957 overlap by 1 nucleotides Pf1N1B4_5957 and Pf1N1B4_5958 are separated by 183 nucleotides
Pf1N1B4_5955 - Permease of the major facilitator superfamily, at 403,412 to 404,641
_5955
Pf1N1B4_5956 - NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12), at 404,651 to 405,703
_5956
Pf1N1B4_5957 - Arsenical resistance operon repressor, at 405,703 to 406,065
_5957
Pf1N1B4_5958 - Ferrichrome-iron receptor, at 406,249 to 408,372
_5958
Position (kb) 404
405
406 Strain fitness (log2 ratio) -2
-1
0
1 at 403.920 kb on + strand, within Pf1N1B4_5955 at 403.920 kb on + strand, within Pf1N1B4_5955 at 404.220 kb on + strand, within Pf1N1B4_5955 at 404.220 kb on + strand, within Pf1N1B4_5955 at 404.221 kb on - strand, within Pf1N1B4_5955 at 404.475 kb on + strand at 404.476 kb on - strand, within Pf1N1B4_5955 at 404.476 kb on - strand, within Pf1N1B4_5955 at 404.476 kb on - strand at 404.476 kb on - strand, within Pf1N1B4_5955 at 404.581 kb on - strand at 404.581 kb on - strand at 404.602 kb on - strand at 404.727 kb on + strand at 404.727 kb on + strand at 404.727 kb on + strand at 404.728 kb on - strand at 404.728 kb on - strand at 404.728 kb on - strand at 404.728 kb on - strand at 405.334 kb on - strand, within Pf1N1B4_5956 at 405.650 kb on - strand at 405.852 kb on - strand, within Pf1N1B4_5957 at 405.854 kb on + strand, within Pf1N1B4_5957 at 405.855 kb on - strand, within Pf1N1B4_5957 at 405.897 kb on + strand, within Pf1N1B4_5957 at 405.898 kb on - strand, within Pf1N1B4_5957 at 406.106 kb on + strand at 406.133 kb on - strand at 406.149 kb on - strand at 406.270 kb on + strand at 406.307 kb on + strand at 406.308 kb on - strand at 406.308 kb on - strand at 406.388 kb on - strand at 406.603 kb on + strand, within Pf1N1B4_5958 at 406.603 kb on + strand, within Pf1N1B4_5958 at 406.604 kb on - strand, within Pf1N1B4_5958 at 406.604 kb on - strand, within Pf1N1B4_5958 at 406.604 kb on - strand, within Pf1N1B4_5958 at 406.604 kb on - strand, within Pf1N1B4_5958 at 406.604 kb on - strand, within Pf1N1B4_5958 at 406.604 kb on - strand at 406.634 kb on - strand, within Pf1N1B4_5958 at 406.634 kb on - strand, within Pf1N1B4_5958
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 403,920 + Pf1N1B4_5955 0.41 -1.8 403,920 + Pf1N1B4_5955 0.41 +0.6 404,220 + Pf1N1B4_5955 0.66 -0.9 404,220 + Pf1N1B4_5955 0.66 +0.9 404,221 - Pf1N1B4_5955 0.66 +0.1 404,475 + -0.1 404,476 - Pf1N1B4_5955 0.87 -1.0 404,476 - Pf1N1B4_5955 0.87 -0.6 404,476 - +0.4 404,476 - Pf1N1B4_5955 0.87 +0.9 404,581 - +0.9 404,581 - +0.4 404,602 - -0.1 404,727 + -2.1 404,727 + +0.4 404,727 + +0.4 404,728 - +0.9 404,728 - +0.0 404,728 - -1.1 404,728 - -1.0 405,334 - Pf1N1B4_5956 0.65 -1.0 405,650 - -0.5 405,852 - Pf1N1B4_5957 0.41 -0.7 405,854 + Pf1N1B4_5957 0.42 -0.5 405,855 - Pf1N1B4_5957 0.42 -0.5 405,897 + Pf1N1B4_5957 0.53 +0.1 405,898 - Pf1N1B4_5957 0.54 -0.1 406,106 + +1.4 406,133 - -1.1 406,149 - -0.7 406,270 + -0.1 406,307 + +0.6 406,308 - +0.6 406,308 - +1.4 406,388 - -0.6 406,603 + Pf1N1B4_5958 0.17 +0.0 406,603 + Pf1N1B4_5958 0.17 -0.1 406,604 - Pf1N1B4_5958 0.17 -0.8 406,604 - Pf1N1B4_5958 0.17 -1.1 406,604 - Pf1N1B4_5958 0.17 +0.9 406,604 - Pf1N1B4_5958 0.17 -0.4 406,604 - Pf1N1B4_5958 0.17 -0.4 406,604 - -0.1 406,634 - Pf1N1B4_5958 0.18 -0.4 406,634 - Pf1N1B4_5958 0.18 +0.2
Or see this region's nucleotide sequence