Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5502 and Pf1N1B4_5503 are separated by 499 nucleotides
Pf1N1B4_5502 - hypothetical protein, at 251,379 to 252,542
_5502
Pf1N1B4_5503 - hypothetical protein, at 253,042 to 253,266
_5503
Position (kb) 253
254 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 252.043 kb on + strand, within Pf1N1B4_5502 at 252.043 kb on + strand, within Pf1N1B4_5502 at 252.043 kb on + strand, within Pf1N1B4_5502 at 252.043 kb on + strand, within Pf1N1B4_5502 at 252.043 kb on + strand, within Pf1N1B4_5502 at 252.044 kb on - strand, within Pf1N1B4_5502 at 252.044 kb on - strand, within Pf1N1B4_5502 at 252.044 kb on - strand at 252.044 kb on - strand, within Pf1N1B4_5502 at 252.044 kb on - strand, within Pf1N1B4_5502 at 252.044 kb on - strand, within Pf1N1B4_5502 at 252.044 kb on - strand, within Pf1N1B4_5502 at 252.044 kb on - strand, within Pf1N1B4_5502 at 252.044 kb on - strand, within Pf1N1B4_5502 at 252.115 kb on - strand, within Pf1N1B4_5502 at 252.143 kb on + strand, within Pf1N1B4_5502 at 252.144 kb on - strand, within Pf1N1B4_5502 at 252.144 kb on - strand at 252.144 kb on - strand, within Pf1N1B4_5502 at 252.179 kb on + strand, within Pf1N1B4_5502 at 252.180 kb on - strand, within Pf1N1B4_5502 at 252.185 kb on + strand, within Pf1N1B4_5502 at 252.239 kb on + strand, within Pf1N1B4_5502 at 252.274 kb on + strand, within Pf1N1B4_5502 at 252.275 kb on - strand, within Pf1N1B4_5502 at 252.382 kb on + strand, within Pf1N1B4_5502 at 252.383 kb on - strand, within Pf1N1B4_5502 at 252.419 kb on + strand, within Pf1N1B4_5502 at 252.420 kb on - strand, within Pf1N1B4_5502 at 252.420 kb on - strand, within Pf1N1B4_5502 at 252.429 kb on + strand at 252.429 kb on + strand at 252.429 kb on + strand at 252.430 kb on - strand at 252.430 kb on - strand at 252.435 kb on + strand at 252.435 kb on + strand at 252.435 kb on + strand at 252.436 kb on - strand at 252.553 kb on + strand at 252.553 kb on + strand at 252.553 kb on + strand at 252.553 kb on + strand at 252.554 kb on - strand at 252.554 kb on - strand at 252.589 kb on + strand at 252.589 kb on + strand at 252.590 kb on - strand at 252.590 kb on - strand at 252.590 kb on - strand at 252.590 kb on - strand at 252.652 kb on - strand at 252.661 kb on + strand at 252.732 kb on + strand at 252.732 kb on + strand at 252.732 kb on + strand at 252.807 kb on - strand at 252.821 kb on + strand at 252.836 kb on - strand at 252.902 kb on + strand at 252.936 kb on + strand at 252.936 kb on + strand at 252.936 kb on + strand at 252.944 kb on - strand at 252.946 kb on + strand at 252.993 kb on + strand at 252.993 kb on + strand at 252.994 kb on - strand at 252.995 kb on + strand at 252.995 kb on + strand at 252.995 kb on + strand at 252.995 kb on + strand at 252.996 kb on - strand at 252.996 kb on - strand at 253.123 kb on + strand, within Pf1N1B4_5503 at 253.123 kb on + strand, within Pf1N1B4_5503 at 253.123 kb on + strand, within Pf1N1B4_5503 at 253.123 kb on + strand, within Pf1N1B4_5503 at 253.123 kb on + strand, within Pf1N1B4_5503 at 253.124 kb on - strand, within Pf1N1B4_5503 at 253.124 kb on - strand, within Pf1N1B4_5503 at 253.124 kb on - strand, within Pf1N1B4_5503 at 253.124 kb on - strand, within Pf1N1B4_5503 at 253.124 kb on - strand, within Pf1N1B4_5503 at 253.124 kb on - strand, within Pf1N1B4_5503 at 253.124 kb on - strand, within Pf1N1B4_5503 at 253.124 kb on - strand, within Pf1N1B4_5503 at 253.124 kb on - strand, within Pf1N1B4_5503 at 253.129 kb on + strand, within Pf1N1B4_5503 at 253.129 kb on + strand, within Pf1N1B4_5503 at 253.129 kb on + strand, within Pf1N1B4_5503 at 253.129 kb on + strand, within Pf1N1B4_5503 at 253.129 kb on + strand, within Pf1N1B4_5503 at 253.130 kb on - strand, within Pf1N1B4_5503 at 253.130 kb on - strand, within Pf1N1B4_5503 at 253.267 kb on - strand at 253.315 kb on - strand at 253.315 kb on - strand at 253.380 kb on - strand at 253.380 kb on - strand at 253.426 kb on + strand at 253.427 kb on - strand at 253.427 kb on - strand at 253.441 kb on - strand at 253.473 kb on + strand at 253.474 kb on - strand at 253.474 kb on - strand at 253.474 kb on - strand at 253.474 kb on - strand at 253.474 kb on - strand at 253.474 kb on - strand at 253.477 kb on - strand at 253.477 kb on - strand at 253.492 kb on - strand at 253.494 kb on + strand at 253.495 kb on - strand at 253.518 kb on + strand at 253.559 kb on + strand at 253.560 kb on - strand at 253.593 kb on - strand at 253.593 kb on - strand at 253.604 kb on - strand at 253.604 kb on - strand at 253.725 kb on + strand at 253.725 kb on + strand at 253.726 kb on - strand at 253.770 kb on + strand at 253.770 kb on + strand at 253.770 kb on + strand at 253.770 kb on + strand at 253.781 kb on + strand at 253.958 kb on - strand at 253.971 kb on - strand at 253.989 kb on + strand at 254.037 kb on + strand at 254.038 kb on - strand at 254.038 kb on - strand at 254.074 kb on + strand at 254.074 kb on + strand at 254.074 kb on + strand at 254.075 kb on - strand at 254.075 kb on - strand at 254.161 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 252,043 + Pf1N1B4_5502 0.57 -0.0 252,043 + Pf1N1B4_5502 0.57 -1.2 252,043 + Pf1N1B4_5502 0.57 +0.4 252,043 + Pf1N1B4_5502 0.57 +1.4 252,043 + Pf1N1B4_5502 0.57 -1.3 252,044 - Pf1N1B4_5502 0.57 +0.8 252,044 - Pf1N1B4_5502 0.57 -0.8 252,044 - +2.6 252,044 - Pf1N1B4_5502 0.57 +0.3 252,044 - Pf1N1B4_5502 0.57 -1.2 252,044 - Pf1N1B4_5502 0.57 +0.8 252,044 - Pf1N1B4_5502 0.57 +0.6 252,044 - Pf1N1B4_5502 0.57 -0.3 252,044 - Pf1N1B4_5502 0.57 -0.5 252,115 - Pf1N1B4_5502 0.63 -0.8 252,143 + Pf1N1B4_5502 0.66 -1.2 252,144 - Pf1N1B4_5502 0.66 -0.8 252,144 - +1.0 252,144 - Pf1N1B4_5502 0.66 -0.2 252,179 + Pf1N1B4_5502 0.69 -0.8 252,180 - Pf1N1B4_5502 0.69 -0.3 252,185 + Pf1N1B4_5502 0.69 +0.7 252,239 + Pf1N1B4_5502 0.74 -0.2 252,274 + Pf1N1B4_5502 0.77 +0.5 252,275 - Pf1N1B4_5502 0.77 +1.1 252,382 + Pf1N1B4_5502 0.86 -0.0 252,383 - Pf1N1B4_5502 0.86 -0.3 252,419 + Pf1N1B4_5502 0.89 -0.4 252,420 - Pf1N1B4_5502 0.89 +1.3 252,420 - Pf1N1B4_5502 0.89 -0.4 252,429 + -0.0 252,429 + -0.4 252,429 + +0.4 252,430 - -1.0 252,430 - -1.0 252,435 + +0.8 252,435 + -0.1 252,435 + -1.2 252,436 - -0.5 252,553 + +0.1 252,553 + +0.4 252,553 + +1.0 252,553 + +0.2 252,554 - -0.0 252,554 - +0.3 252,589 + +0.4 252,589 + +1.0 252,590 - +1.0 252,590 - +0.3 252,590 - -0.3 252,590 - +2.0 252,652 - +0.6 252,661 + +1.0 252,732 + +0.5 252,732 + -0.0 252,732 + -0.8 252,807 - -0.3 252,821 + -0.4 252,836 - +3.0 252,902 + +0.4 252,936 + +0.7 252,936 + -0.4 252,936 + +0.4 252,944 - -0.6 252,946 + +0.1 252,993 + -1.6 252,993 + -0.0 252,994 - -0.2 252,995 + -0.5 252,995 + +0.3 252,995 + +0.3 252,995 + -0.0 252,996 - +0.4 252,996 - +1.4 253,123 + Pf1N1B4_5503 0.36 +0.7 253,123 + Pf1N1B4_5503 0.36 -0.8 253,123 + Pf1N1B4_5503 0.36 -2.0 253,123 + Pf1N1B4_5503 0.36 -0.6 253,123 + Pf1N1B4_5503 0.36 -0.2 253,124 - Pf1N1B4_5503 0.36 -1.2 253,124 - Pf1N1B4_5503 0.36 -1.0 253,124 - Pf1N1B4_5503 0.36 +0.1 253,124 - Pf1N1B4_5503 0.36 -0.8 253,124 - Pf1N1B4_5503 0.36 -1.2 253,124 - Pf1N1B4_5503 0.36 -0.7 253,124 - Pf1N1B4_5503 0.36 -0.3 253,124 - Pf1N1B4_5503 0.36 -1.9 253,124 - Pf1N1B4_5503 0.36 -0.8 253,129 + Pf1N1B4_5503 0.39 +0.1 253,129 + Pf1N1B4_5503 0.39 -0.7 253,129 + Pf1N1B4_5503 0.39 +0.2 253,129 + Pf1N1B4_5503 0.39 -1.0 253,129 + Pf1N1B4_5503 0.39 -0.9 253,130 - Pf1N1B4_5503 0.39 +0.1 253,130 - Pf1N1B4_5503 0.39 -1.0 253,267 - +0.2 253,315 - +0.3 253,315 - -0.5 253,380 - -0.3 253,380 - +0.6 253,426 + +0.4 253,427 - +0.1 253,427 - -0.4 253,441 - +0.8 253,473 + +0.7 253,474 - -0.3 253,474 - +0.4 253,474 - +0.3 253,474 - -0.5 253,474 - -1.1 253,474 - +0.4 253,477 - -0.0 253,477 - +0.5 253,492 - -0.0 253,494 + -0.0 253,495 - -0.3 253,518 + +1.2 253,559 + +1.4 253,560 - +0.4 253,593 - +0.4 253,593 - +0.4 253,604 - +0.7 253,604 - +1.4 253,725 + +0.2 253,725 + -1.3 253,726 - -0.3 253,770 + -0.0 253,770 + +1.3 253,770 + +1.0 253,770 + -0.3 253,781 + +0.4 253,958 - +1.0 253,971 - +1.0 253,989 + -0.8 254,037 + -0.7 254,038 - -0.3 254,038 - +2.0 254,074 + +2.0 254,074 + +1.7 254,074 + +1.4 254,075 - +0.2 254,075 - +0.4 254,161 - +1.4
Or see this region's nucleotide sequence