Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5363 and Pf1N1B4_5364 are separated by 184 nucleotides Pf1N1B4_5364 and Pf1N1B4_5365 are separated by 64 nucleotides Pf1N1B4_5365 and Pf1N1B4_5366 are separated by 145 nucleotides Pf1N1B4_5366 and Pf1N1B4_5367 are separated by 291 nucleotides
Pf1N1B4_5363 - hypothetical protein, at 97,638 to 98,639
_5363
Pf1N1B4_5364 - hypothetical protein, at 98,824 to 98,964
_5364
Pf1N1B4_5365 - hypothetical protein, at 99,029 to 99,457
_5365
Pf1N1B4_5366 - hypothetical protein, at 99,603 to 99,803
_5366
Pf1N1B4_5367 - hypothetical protein, at 100,095 to 100,583
_5367
Position (kb) 99
100 Strain fitness (log2 ratio) -1
0
1
2
3 at 98.038 kb on + strand, within Pf1N1B4_5363 at 98.038 kb on + strand, within Pf1N1B4_5363 at 98.039 kb on - strand, within Pf1N1B4_5363 at 98.185 kb on + strand, within Pf1N1B4_5363 at 98.230 kb on + strand, within Pf1N1B4_5363 at 98.240 kb on + strand, within Pf1N1B4_5363 at 98.266 kb on + strand, within Pf1N1B4_5363 at 98.266 kb on + strand at 98.335 kb on + strand, within Pf1N1B4_5363 at 98.479 kb on + strand, within Pf1N1B4_5363 at 98.479 kb on + strand, within Pf1N1B4_5363 at 98.480 kb on - strand, within Pf1N1B4_5363 at 98.482 kb on + strand, within Pf1N1B4_5363 at 98.483 kb on - strand, within Pf1N1B4_5363 at 98.557 kb on + strand at 98.656 kb on + strand at 98.657 kb on - strand at 98.657 kb on - strand at 98.661 kb on + strand at 98.662 kb on - strand at 98.662 kb on - strand at 98.678 kb on + strand at 98.678 kb on + strand at 98.678 kb on + strand at 98.679 kb on - strand at 98.692 kb on + strand at 98.774 kb on - strand at 98.797 kb on + strand at 98.797 kb on + strand at 98.797 kb on + strand at 98.823 kb on + strand at 98.824 kb on - strand at 98.932 kb on - strand at 98.978 kb on + strand at 98.979 kb on - strand at 98.979 kb on - strand at 99.090 kb on + strand, within Pf1N1B4_5365 at 99.090 kb on + strand, within Pf1N1B4_5365 at 99.090 kb on + strand, within Pf1N1B4_5365 at 99.090 kb on + strand, within Pf1N1B4_5365 at 99.091 kb on - strand, within Pf1N1B4_5365 at 99.160 kb on + strand, within Pf1N1B4_5365 at 99.160 kb on + strand, within Pf1N1B4_5365 at 99.160 kb on + strand at 99.161 kb on - strand, within Pf1N1B4_5365 at 99.482 kb on + strand at 99.482 kb on + strand at 99.483 kb on - strand at 99.583 kb on + strand at 99.583 kb on + strand at 99.584 kb on - strand at 99.584 kb on - strand at 99.746 kb on + strand, within Pf1N1B4_5366 at 99.895 kb on + strand at 99.896 kb on - strand at 99.896 kb on - strand at 99.896 kb on - strand at 99.896 kb on - strand at 100.062 kb on + strand at 100.077 kb on + strand at 100.077 kb on + strand at 100.077 kb on + strand at 100.174 kb on + strand, within Pf1N1B4_5367 at 100.249 kb on + strand, within Pf1N1B4_5367 at 100.273 kb on + strand, within Pf1N1B4_5367 at 100.274 kb on - strand, within Pf1N1B4_5367 at 100.274 kb on - strand, within Pf1N1B4_5367 at 100.274 kb on - strand, within Pf1N1B4_5367 at 100.313 kb on + strand, within Pf1N1B4_5367 at 100.313 kb on + strand, within Pf1N1B4_5367 at 100.313 kb on + strand, within Pf1N1B4_5367 at 100.313 kb on + strand, within Pf1N1B4_5367 at 100.313 kb on + strand, within Pf1N1B4_5367 at 100.314 kb on - strand, within Pf1N1B4_5367
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 98,038 + Pf1N1B4_5363 0.40 +0.5 98,038 + Pf1N1B4_5363 0.40 -0.8 98,039 - Pf1N1B4_5363 0.40 +0.5 98,185 + Pf1N1B4_5363 0.55 +0.7 98,230 + Pf1N1B4_5363 0.59 +3.0 98,240 + Pf1N1B4_5363 0.60 -0.0 98,266 + Pf1N1B4_5363 0.63 +1.1 98,266 + +2.0 98,335 + Pf1N1B4_5363 0.70 +1.0 98,479 + Pf1N1B4_5363 0.84 +0.4 98,479 + Pf1N1B4_5363 0.84 -0.2 98,480 - Pf1N1B4_5363 0.84 -1.6 98,482 + Pf1N1B4_5363 0.84 +2.5 98,483 - Pf1N1B4_5363 0.84 -0.3 98,557 + +0.6 98,656 + -0.2 98,657 - +1.0 98,657 - +0.7 98,661 + +1.3 98,662 - -0.0 98,662 - +1.1 98,678 + -0.0 98,678 + +1.0 98,678 + -0.0 98,679 - -0.0 98,692 + +0.2 98,774 - +1.4 98,797 + -0.3 98,797 + -0.6 98,797 + -1.0 98,823 + +0.7 98,824 - -0.0 98,932 - +0.7 98,978 + +0.5 98,979 - +0.4 98,979 - -0.3 99,090 + Pf1N1B4_5365 0.14 +2.3 99,090 + Pf1N1B4_5365 0.14 +1.1 99,090 + Pf1N1B4_5365 0.14 +0.8 99,090 + Pf1N1B4_5365 0.14 +1.6 99,091 - Pf1N1B4_5365 0.14 +1.3 99,160 + Pf1N1B4_5365 0.31 +0.2 99,160 + Pf1N1B4_5365 0.31 +0.7 99,160 + -0.3 99,161 - Pf1N1B4_5365 0.31 +0.2 99,482 + -0.8 99,482 + -0.3 99,483 - +1.3 99,583 + +0.5 99,583 + +3.6 99,584 - -0.8 99,584 - -0.4 99,746 + Pf1N1B4_5366 0.71 -0.2 99,895 + +0.4 99,896 - -0.3 99,896 - +0.4 99,896 - +0.7 99,896 - -0.0 100,062 + +0.4 100,077 + +0.2 100,077 + +1.6 100,077 + +0.1 100,174 + Pf1N1B4_5367 0.16 +1.8 100,249 + Pf1N1B4_5367 0.31 +0.4 100,273 + Pf1N1B4_5367 0.36 -0.1 100,274 - Pf1N1B4_5367 0.37 -0.3 100,274 - Pf1N1B4_5367 0.37 -0.0 100,274 - Pf1N1B4_5367 0.37 +0.5 100,313 + Pf1N1B4_5367 0.45 -0.0 100,313 + Pf1N1B4_5367 0.45 -0.1 100,313 + Pf1N1B4_5367 0.45 -0.7 100,313 + Pf1N1B4_5367 0.45 +0.3 100,313 + Pf1N1B4_5367 0.45 -0.2 100,314 - Pf1N1B4_5367 0.45 +0.9
Or see this region's nucleotide sequence