Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4885 and Pf1N1B4_4886 are separated by 110 nucleotides Pf1N1B4_4886 and Pf1N1B4_4887 are separated by 158 nucleotides
Pf1N1B4_4885 - FIG000557: hypothetical protein co-occurring with RecR, at 5,404,008 to 5,405,408
_4885
Pf1N1B4_4886 - Phosphoglucomutase (EC 5.4.2.2), at 5,405,519 to 5,407,165
_4886
Pf1N1B4_4887 - Pirin, at 5,407,324 to 5,408,019
_4887
Position (kb) 5405
5406
5407
5408 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5404.717 kb on + strand, within Pf1N1B4_4885 at 5404.959 kb on + strand, within Pf1N1B4_4885 at 5404.960 kb on - strand, within Pf1N1B4_4885 at 5405.045 kb on + strand, within Pf1N1B4_4885 at 5405.046 kb on - strand, within Pf1N1B4_4885 at 5405.595 kb on - strand at 5405.598 kb on - strand at 5405.598 kb on - strand at 5405.906 kb on + strand, within Pf1N1B4_4886 at 5405.907 kb on - strand, within Pf1N1B4_4886 at 5405.907 kb on - strand, within Pf1N1B4_4886 at 5405.990 kb on + strand, within Pf1N1B4_4886 at 5405.991 kb on - strand, within Pf1N1B4_4886 at 5405.991 kb on - strand, within Pf1N1B4_4886 at 5405.991 kb on - strand, within Pf1N1B4_4886 at 5406.098 kb on + strand, within Pf1N1B4_4886 at 5406.141 kb on - strand, within Pf1N1B4_4886 at 5406.152 kb on + strand, within Pf1N1B4_4886 at 5406.152 kb on + strand, within Pf1N1B4_4886 at 5406.152 kb on + strand, within Pf1N1B4_4886 at 5406.153 kb on - strand, within Pf1N1B4_4886 at 5406.153 kb on - strand at 5406.153 kb on - strand, within Pf1N1B4_4886 at 5406.153 kb on - strand at 5406.494 kb on + strand, within Pf1N1B4_4886 at 5406.494 kb on + strand, within Pf1N1B4_4886 at 5406.494 kb on + strand, within Pf1N1B4_4886 at 5406.494 kb on + strand, within Pf1N1B4_4886 at 5406.495 kb on - strand, within Pf1N1B4_4886 at 5406.495 kb on - strand, within Pf1N1B4_4886 at 5407.067 kb on + strand at 5407.067 kb on + strand at 5407.067 kb on + strand at 5407.067 kb on + strand at 5407.068 kb on - strand at 5407.068 kb on - strand at 5407.068 kb on - strand at 5407.076 kb on + strand at 5407.077 kb on - strand at 5407.077 kb on - strand at 5407.077 kb on - strand at 5407.265 kb on + strand at 5407.800 kb on + strand, within Pf1N1B4_4887 at 5407.801 kb on - strand, within Pf1N1B4_4887 at 5407.820 kb on + strand, within Pf1N1B4_4887 at 5407.821 kb on - strand, within Pf1N1B4_4887 at 5407.821 kb on - strand at 5407.821 kb on - strand, within Pf1N1B4_4887 at 5408.101 kb on + strand at 5408.102 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 5,404,717 + Pf1N1B4_4885 0.51 -1.8 5,404,959 + Pf1N1B4_4885 0.68 -0.6 5,404,960 - Pf1N1B4_4885 0.68 +0.5 5,405,045 + Pf1N1B4_4885 0.74 -0.5 5,405,046 - Pf1N1B4_4885 0.74 -0.1 5,405,595 - -0.5 5,405,598 - -0.5 5,405,598 - -1.1 5,405,906 + Pf1N1B4_4886 0.23 -1.0 5,405,907 - Pf1N1B4_4886 0.24 -1.5 5,405,907 - Pf1N1B4_4886 0.24 +1.8 5,405,990 + Pf1N1B4_4886 0.29 -0.8 5,405,991 - Pf1N1B4_4886 0.29 +0.4 5,405,991 - Pf1N1B4_4886 0.29 -0.2 5,405,991 - Pf1N1B4_4886 0.29 -0.2 5,406,098 + Pf1N1B4_4886 0.35 -0.3 5,406,141 - Pf1N1B4_4886 0.38 -0.8 5,406,152 + Pf1N1B4_4886 0.38 +1.2 5,406,152 + Pf1N1B4_4886 0.38 -0.8 5,406,152 + Pf1N1B4_4886 0.38 -1.6 5,406,153 - Pf1N1B4_4886 0.38 -1.6 5,406,153 - +0.2 5,406,153 - Pf1N1B4_4886 0.38 -0.1 5,406,153 - +0.8 5,406,494 + Pf1N1B4_4886 0.59 +0.6 5,406,494 + Pf1N1B4_4886 0.59 -0.9 5,406,494 + Pf1N1B4_4886 0.59 +0.5 5,406,494 + Pf1N1B4_4886 0.59 -0.6 5,406,495 - Pf1N1B4_4886 0.59 -1.5 5,406,495 - Pf1N1B4_4886 0.59 -1.2 5,407,067 + +0.8 5,407,067 + +0.0 5,407,067 + -0.4 5,407,067 + +0.8 5,407,068 - -0.0 5,407,068 - -0.2 5,407,068 - +0.8 5,407,076 + +1.4 5,407,077 - +1.7 5,407,077 - -0.3 5,407,077 - +0.4 5,407,265 + +1.1 5,407,800 + Pf1N1B4_4887 0.68 +0.3 5,407,801 - Pf1N1B4_4887 0.69 +0.0 5,407,820 + Pf1N1B4_4887 0.71 -0.8 5,407,821 - Pf1N1B4_4887 0.71 -0.2 5,407,821 - -0.2 5,407,821 - Pf1N1B4_4887 0.71 +0.5 5,408,101 + -0.4 5,408,102 - +1.1
Or see this region's nucleotide sequence