Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4407 and Pf1N1B4_4408 are separated by 917 nucleotides Pf1N1B4_4408 and Pf1N1B4_4409 are separated by 402 nucleotides Pf1N1B4_4409 and Pf1N1B4_4410 are separated by 192 nucleotides
Pf1N1B4_4407 - Signal transduction histidine kinase CheA (EC 2.7.3.-), at 4,867,442 to 4,871,356
_4407
Pf1N1B4_4408 - two-component response regulator, at 4,872,274 to 4,872,879
_4408
Pf1N1B4_4409 - hypothetical protein, at 4,873,282 to 4,873,398
_4409
Pf1N1B4_4410 - hypothetical protein, at 4,873,591 to 4,873,770
_4410
Position (kb)
4872
4873 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4871.478 kb on + strand at 4871.961 kb on + strand at 4872.344 kb on + strand, within Pf1N1B4_4408 at 4872.471 kb on + strand, within Pf1N1B4_4408 at 4872.738 kb on + strand, within Pf1N1B4_4408 at 4873.005 kb on + strand at 4873.284 kb on - strand at 4873.284 kb on - strand at 4873.284 kb on - strand at 4873.284 kb on - strand at 4873.329 kb on - strand, within Pf1N1B4_4409 at 4873.329 kb on - strand at 4873.476 kb on + strand at 4873.476 kb on + strand at 4873.476 kb on + strand at 4873.477 kb on - strand at 4873.477 kb on - strand at 4873.477 kb on - strand at 4873.477 kb on - strand at 4873.740 kb on + strand, within Pf1N1B4_4410 at 4873.741 kb on - strand, within Pf1N1B4_4410 at 4873.792 kb on - strand at 4873.835 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 4,871,478 + -0.0 4,871,961 + -0.1 4,872,344 + Pf1N1B4_4408 0.12 +0.5 4,872,471 + Pf1N1B4_4408 0.33 +0.2 4,872,738 + Pf1N1B4_4408 0.77 +0.5 4,873,005 + +2.3 4,873,284 - +0.2 4,873,284 - +0.2 4,873,284 - -2.2 4,873,284 - -1.8 4,873,329 - Pf1N1B4_4409 0.40 +0.8 4,873,329 - -0.2 4,873,476 + +1.0 4,873,476 + -0.4 4,873,476 + -0.3 4,873,477 - +0.4 4,873,477 - -0.2 4,873,477 - -1.1 4,873,477 - +0.0 4,873,740 + Pf1N1B4_4410 0.83 -0.2 4,873,741 - Pf1N1B4_4410 0.83 +0.6 4,873,792 - -0.8 4,873,835 + +0.8
Or see this region's nucleotide sequence