Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4242 and Pf1N1B4_4243 are separated by 157 nucleotides Pf1N1B4_4243 and Pf1N1B4_4244 are separated by 3 nucleotides
Pf1N1B4_4242 - cell processes; transport of small molecules; amino acids, amines, peptides, at 4,700,650 to 4,702,215
_4242
Pf1N1B4_4243 - Alcohol dehydrogenase (EC 1.1.1.1), at 4,702,373 to 4,703,533
_4243
Pf1N1B4_4244 - Aldehyde dehydrogenase (EC 1.2.1.3), at 4,703,537 to 4,704,928
_4244
Position (kb) 4702
4703
4704 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4701.453 kb on + strand, within Pf1N1B4_4242 at 4701.454 kb on - strand at 4701.486 kb on - strand at 4701.486 kb on - strand, within Pf1N1B4_4242 at 4701.567 kb on - strand, within Pf1N1B4_4242 at 4701.809 kb on + strand, within Pf1N1B4_4242 at 4701.812 kb on + strand, within Pf1N1B4_4242 at 4702.204 kb on + strand at 4702.215 kb on + strand at 4702.298 kb on + strand at 4702.299 kb on - strand at 4702.374 kb on + strand at 4702.522 kb on + strand, within Pf1N1B4_4243 at 4702.602 kb on + strand, within Pf1N1B4_4243 at 4702.655 kb on + strand at 4702.655 kb on + strand, within Pf1N1B4_4243 at 4702.655 kb on + strand, within Pf1N1B4_4243 at 4702.655 kb on + strand, within Pf1N1B4_4243 at 4702.656 kb on - strand, within Pf1N1B4_4243 at 4702.656 kb on - strand, within Pf1N1B4_4243 at 4702.659 kb on + strand at 4702.660 kb on - strand at 4702.701 kb on + strand at 4702.832 kb on + strand, within Pf1N1B4_4243 at 4702.873 kb on + strand, within Pf1N1B4_4243 at 4702.873 kb on + strand, within Pf1N1B4_4243 at 4702.874 kb on - strand, within Pf1N1B4_4243 at 4703.678 kb on + strand, within Pf1N1B4_4244 at 4703.678 kb on + strand, within Pf1N1B4_4244 at 4703.741 kb on - strand, within Pf1N1B4_4244 at 4703.857 kb on + strand, within Pf1N1B4_4244 at 4703.857 kb on + strand, within Pf1N1B4_4244 at 4703.857 kb on + strand, within Pf1N1B4_4244 at 4703.857 kb on + strand at 4703.877 kb on - strand, within Pf1N1B4_4244 at 4703.888 kb on + strand, within Pf1N1B4_4244 at 4703.889 kb on - strand, within Pf1N1B4_4244 at 4704.005 kb on - strand, within Pf1N1B4_4244 at 4704.054 kb on + strand, within Pf1N1B4_4244 at 4704.055 kb on - strand, within Pf1N1B4_4244 at 4704.115 kb on - strand, within Pf1N1B4_4244 at 4704.118 kb on + strand, within Pf1N1B4_4244 at 4704.118 kb on + strand, within Pf1N1B4_4244 at 4704.118 kb on + strand, within Pf1N1B4_4244 at 4704.119 kb on - strand, within Pf1N1B4_4244 at 4704.119 kb on - strand, within Pf1N1B4_4244 at 4704.214 kb on - strand, within Pf1N1B4_4244 at 4704.503 kb on - strand, within Pf1N1B4_4244 at 4704.526 kb on - strand, within Pf1N1B4_4244 at 4704.526 kb on - strand, within Pf1N1B4_4244
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 4,701,453 + Pf1N1B4_4242 0.51 +1.5 4,701,454 - +0.8 4,701,486 - +0.8 4,701,486 - Pf1N1B4_4242 0.53 -0.6 4,701,567 - Pf1N1B4_4242 0.59 -0.5 4,701,809 + Pf1N1B4_4242 0.74 +1.8 4,701,812 + Pf1N1B4_4242 0.74 +1.6 4,702,204 + +0.2 4,702,215 + +0.8 4,702,298 + +0.0 4,702,299 - -0.8 4,702,374 + +0.8 4,702,522 + Pf1N1B4_4243 0.13 -0.4 4,702,602 + Pf1N1B4_4243 0.20 -0.4 4,702,655 + +0.8 4,702,655 + Pf1N1B4_4243 0.24 +1.3 4,702,655 + Pf1N1B4_4243 0.24 -1.5 4,702,655 + Pf1N1B4_4243 0.24 +0.8 4,702,656 - Pf1N1B4_4243 0.24 -2.2 4,702,656 - Pf1N1B4_4243 0.24 -0.2 4,702,659 + -0.2 4,702,660 - -0.2 4,702,701 + -0.2 4,702,832 + Pf1N1B4_4243 0.40 +0.2 4,702,873 + Pf1N1B4_4243 0.43 -0.2 4,702,873 + Pf1N1B4_4243 0.43 +0.5 4,702,874 - Pf1N1B4_4243 0.43 -0.3 4,703,678 + Pf1N1B4_4244 0.10 +2.0 4,703,678 + Pf1N1B4_4244 0.10 +0.0 4,703,741 - Pf1N1B4_4244 0.15 -0.5 4,703,857 + Pf1N1B4_4244 0.23 +0.8 4,703,857 + Pf1N1B4_4244 0.23 +0.8 4,703,857 + Pf1N1B4_4244 0.23 +0.3 4,703,857 + +1.4 4,703,877 - Pf1N1B4_4244 0.24 +0.1 4,703,888 + Pf1N1B4_4244 0.25 +1.2 4,703,889 - Pf1N1B4_4244 0.25 -0.2 4,704,005 - Pf1N1B4_4244 0.34 +0.4 4,704,054 + Pf1N1B4_4244 0.37 -0.8 4,704,055 - Pf1N1B4_4244 0.37 -0.2 4,704,115 - Pf1N1B4_4244 0.42 +0.4 4,704,118 + Pf1N1B4_4244 0.42 -0.5 4,704,118 + Pf1N1B4_4244 0.42 +0.2 4,704,118 + Pf1N1B4_4244 0.42 -0.2 4,704,119 - Pf1N1B4_4244 0.42 +0.4 4,704,119 - Pf1N1B4_4244 0.42 -0.4 4,704,214 - Pf1N1B4_4244 0.49 +0.5 4,704,503 - Pf1N1B4_4244 0.69 +0.5 4,704,526 - Pf1N1B4_4244 0.71 -0.7 4,704,526 - Pf1N1B4_4244 0.71 -1.0
Or see this region's nucleotide sequence