Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_364 and Pf1N1B4_365 are separated by 286 nucleotides Pf1N1B4_365 and Pf1N1B4_366 are separated by 12 nucleotides Pf1N1B4_366 and Pf1N1B4_367 are separated by 189 nucleotides
Pf1N1B4_364 - Rhodanese domain protein UPF0176, at 433,048 to 433,989
_364
Pf1N1B4_365 - Cell division protein BolA, at 434,276 to 434,575
_365
Pf1N1B4_366 - FIG00954136: hypothetical protein, at 434,588 to 435,109
_366
Pf1N1B4_367 - Fumarate hydratase class II (EC 4.2.1.2), at 435,299 to 436,696
_367
Position (kb) 434
435
436 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 433.652 kb on + strand, within Pf1N1B4_364 at 433.653 kb on - strand, within Pf1N1B4_364 at 433.653 kb on - strand, within Pf1N1B4_364 at 433.934 kb on + strand at 433.956 kb on + strand at 433.956 kb on + strand at 433.958 kb on + strand at 433.958 kb on + strand at 433.959 kb on - strand at 433.994 kb on - strand at 433.994 kb on - strand at 434.017 kb on + strand at 434.018 kb on - strand at 434.076 kb on - strand at 434.204 kb on - strand at 434.204 kb on - strand at 434.204 kb on - strand at 434.277 kb on + strand at 434.277 kb on + strand at 434.277 kb on + strand at 434.278 kb on - strand at 434.349 kb on + strand, within Pf1N1B4_365 at 434.349 kb on + strand, within Pf1N1B4_365 at 434.349 kb on + strand, within Pf1N1B4_365 at 434.350 kb on - strand, within Pf1N1B4_365 at 434.350 kb on - strand, within Pf1N1B4_365 at 434.350 kb on - strand, within Pf1N1B4_365 at 434.350 kb on - strand, within Pf1N1B4_365 at 434.350 kb on - strand, within Pf1N1B4_365 at 434.350 kb on - strand, within Pf1N1B4_365 at 434.350 kb on - strand, within Pf1N1B4_365 at 434.350 kb on - strand, within Pf1N1B4_365 at 434.350 kb on - strand, within Pf1N1B4_365 at 434.350 kb on - strand, within Pf1N1B4_365 at 434.350 kb on - strand, within Pf1N1B4_365 at 434.350 kb on - strand, within Pf1N1B4_365 at 434.350 kb on - strand, within Pf1N1B4_365 at 434.403 kb on + strand, within Pf1N1B4_365 at 434.404 kb on - strand, within Pf1N1B4_365 at 434.404 kb on - strand, within Pf1N1B4_365 at 434.590 kb on - strand at 434.620 kb on + strand at 434.761 kb on + strand, within Pf1N1B4_366 at 434.763 kb on + strand, within Pf1N1B4_366 at 434.763 kb on + strand, within Pf1N1B4_366 at 434.763 kb on + strand, within Pf1N1B4_366 at 434.763 kb on + strand, within Pf1N1B4_366 at 434.764 kb on - strand, within Pf1N1B4_366 at 434.764 kb on - strand, within Pf1N1B4_366 at 434.811 kb on + strand, within Pf1N1B4_366 at 434.811 kb on + strand, within Pf1N1B4_366 at 434.811 kb on + strand, within Pf1N1B4_366 at 434.811 kb on + strand, within Pf1N1B4_366 at 434.812 kb on - strand, within Pf1N1B4_366 at 434.812 kb on - strand, within Pf1N1B4_366 at 434.812 kb on - strand, within Pf1N1B4_366 at 434.812 kb on - strand, within Pf1N1B4_366 at 434.812 kb on - strand, within Pf1N1B4_366 at 434.812 kb on - strand, within Pf1N1B4_366 at 434.886 kb on + strand, within Pf1N1B4_366 at 434.886 kb on + strand at 434.886 kb on + strand, within Pf1N1B4_366 at 434.886 kb on + strand, within Pf1N1B4_366 at 434.886 kb on + strand, within Pf1N1B4_366 at 434.886 kb on + strand at 434.887 kb on - strand, within Pf1N1B4_366 at 434.887 kb on - strand, within Pf1N1B4_366 at 434.887 kb on - strand, within Pf1N1B4_366 at 434.887 kb on - strand, within Pf1N1B4_366 at 434.887 kb on - strand, within Pf1N1B4_366 at 434.887 kb on - strand, within Pf1N1B4_366 at 434.887 kb on - strand, within Pf1N1B4_366 at 434.887 kb on - strand, within Pf1N1B4_366 at 434.967 kb on + strand, within Pf1N1B4_366 at 434.967 kb on + strand, within Pf1N1B4_366 at 434.967 kb on + strand, within Pf1N1B4_366 at 434.967 kb on + strand, within Pf1N1B4_366 at 434.967 kb on + strand, within Pf1N1B4_366 at 434.967 kb on + strand, within Pf1N1B4_366 at 434.967 kb on + strand, within Pf1N1B4_366 at 434.967 kb on + strand, within Pf1N1B4_366 at 434.967 kb on + strand, within Pf1N1B4_366 at 434.967 kb on + strand, within Pf1N1B4_366 at 434.967 kb on + strand, within Pf1N1B4_366 at 434.967 kb on + strand, within Pf1N1B4_366 at 434.968 kb on - strand, within Pf1N1B4_366 at 434.968 kb on - strand, within Pf1N1B4_366 at 434.968 kb on - strand, within Pf1N1B4_366 at 434.968 kb on - strand, within Pf1N1B4_366 at 435.085 kb on + strand at 435.124 kb on + strand at 435.124 kb on + strand at 435.124 kb on + strand at 435.125 kb on - strand at 435.166 kb on - strand at 435.209 kb on + strand at 435.210 kb on - strand at 435.210 kb on - strand at 435.268 kb on - strand at 435.286 kb on + strand at 435.287 kb on - strand at 435.287 kb on - strand at 435.336 kb on + strand at 435.337 kb on - strand at 435.337 kb on - strand at 435.356 kb on + strand at 435.854 kb on - strand, within Pf1N1B4_367 at 435.859 kb on + strand, within Pf1N1B4_367 at 435.859 kb on + strand, within Pf1N1B4_367 at 435.859 kb on + strand, within Pf1N1B4_367 at 435.859 kb on + strand, within Pf1N1B4_367 at 435.860 kb on - strand, within Pf1N1B4_367 at 435.880 kb on + strand, within Pf1N1B4_367 at 435.881 kb on - strand, within Pf1N1B4_367 at 435.881 kb on - strand, within Pf1N1B4_367 at 435.881 kb on - strand, within Pf1N1B4_367 at 436.073 kb on - strand, within Pf1N1B4_367 at 436.084 kb on + strand, within Pf1N1B4_367 at 436.084 kb on + strand, within Pf1N1B4_367 at 436.084 kb on + strand, within Pf1N1B4_367
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 433,652 + Pf1N1B4_364 0.64 +0.4 433,653 - Pf1N1B4_364 0.64 -1.5 433,653 - Pf1N1B4_364 0.64 -1.5 433,934 + +1.1 433,956 + -0.5 433,956 + +1.5 433,958 + +1.1 433,958 + +0.7 433,959 - -0.5 433,994 - -0.2 433,994 - -0.2 434,017 + -0.5 434,018 - -1.2 434,076 - -1.6 434,204 - +0.7 434,204 - +0.3 434,204 - -0.2 434,277 + +0.1 434,277 + -0.2 434,277 + -0.3 434,278 - +0.1 434,349 + Pf1N1B4_365 0.24 -1.5 434,349 + Pf1N1B4_365 0.24 -1.2 434,349 + Pf1N1B4_365 0.24 -2.8 434,350 - Pf1N1B4_365 0.25 -0.5 434,350 - Pf1N1B4_365 0.25 -2.7 434,350 - Pf1N1B4_365 0.25 -2.4 434,350 - Pf1N1B4_365 0.25 -1.2 434,350 - Pf1N1B4_365 0.25 +0.4 434,350 - Pf1N1B4_365 0.25 +0.6 434,350 - Pf1N1B4_365 0.25 -0.5 434,350 - Pf1N1B4_365 0.25 -1.7 434,350 - Pf1N1B4_365 0.25 -1.7 434,350 - Pf1N1B4_365 0.25 -3.5 434,350 - Pf1N1B4_365 0.25 -2.5 434,350 - Pf1N1B4_365 0.25 -1.2 434,350 - Pf1N1B4_365 0.25 -1.7 434,403 + Pf1N1B4_365 0.42 -1.2 434,404 - Pf1N1B4_365 0.43 -1.7 434,404 - Pf1N1B4_365 0.43 -1.2 434,590 - +0.7 434,620 + -2.6 434,761 + Pf1N1B4_366 0.33 +0.1 434,763 + Pf1N1B4_366 0.34 -0.5 434,763 + Pf1N1B4_366 0.34 -0.5 434,763 + Pf1N1B4_366 0.34 -0.5 434,763 + Pf1N1B4_366 0.34 -2.1 434,764 - Pf1N1B4_366 0.34 +0.3 434,764 - Pf1N1B4_366 0.34 -0.7 434,811 + Pf1N1B4_366 0.43 -2.4 434,811 + Pf1N1B4_366 0.43 -1.7 434,811 + Pf1N1B4_366 0.43 -1.6 434,811 + Pf1N1B4_366 0.43 -1.0 434,812 - Pf1N1B4_366 0.43 -0.1 434,812 - Pf1N1B4_366 0.43 +0.2 434,812 - Pf1N1B4_366 0.43 +1.0 434,812 - Pf1N1B4_366 0.43 -0.5 434,812 - Pf1N1B4_366 0.43 -0.7 434,812 - Pf1N1B4_366 0.43 -0.5 434,886 + Pf1N1B4_366 0.57 -1.5 434,886 + -0.5 434,886 + Pf1N1B4_366 0.57 -2.8 434,886 + Pf1N1B4_366 0.57 -3.4 434,886 + Pf1N1B4_366 0.57 -1.2 434,886 + +1.7 434,887 - Pf1N1B4_366 0.57 -0.0 434,887 - Pf1N1B4_366 0.57 -1.1 434,887 - Pf1N1B4_366 0.57 -1.5 434,887 - Pf1N1B4_366 0.57 +0.0 434,887 - Pf1N1B4_366 0.57 +0.6 434,887 - Pf1N1B4_366 0.57 +0.4 434,887 - Pf1N1B4_366 0.57 -0.8 434,887 - Pf1N1B4_366 0.57 +0.5 434,967 + Pf1N1B4_366 0.73 -1.9 434,967 + Pf1N1B4_366 0.73 -3.3 434,967 + Pf1N1B4_366 0.73 -2.2 434,967 + Pf1N1B4_366 0.73 -2.1 434,967 + Pf1N1B4_366 0.73 -0.7 434,967 + Pf1N1B4_366 0.73 -1.7 434,967 + Pf1N1B4_366 0.73 -0.5 434,967 + Pf1N1B4_366 0.73 -2.4 434,967 + Pf1N1B4_366 0.73 -1.8 434,967 + Pf1N1B4_366 0.73 -1.2 434,967 + Pf1N1B4_366 0.73 -0.9 434,967 + Pf1N1B4_366 0.73 -2.9 434,968 - Pf1N1B4_366 0.73 +0.2 434,968 - Pf1N1B4_366 0.73 -0.0 434,968 - Pf1N1B4_366 0.73 -0.7 434,968 - Pf1N1B4_366 0.73 -1.2 435,085 + -1.2 435,124 + -1.6 435,124 + -1.2 435,124 + -2.1 435,125 - -0.7 435,166 - -1.1 435,209 + -1.5 435,210 - +0.2 435,210 - +0.5 435,268 - +0.7 435,286 + -1.2 435,287 - +0.1 435,287 - -0.6 435,336 + -0.7 435,337 - -1.1 435,337 - +0.7 435,356 + -1.1 435,854 - Pf1N1B4_367 0.40 -0.3 435,859 + Pf1N1B4_367 0.40 +0.7 435,859 + Pf1N1B4_367 0.40 -1.5 435,859 + Pf1N1B4_367 0.40 -0.1 435,859 + Pf1N1B4_367 0.40 +2.1 435,860 - Pf1N1B4_367 0.40 -0.6 435,880 + Pf1N1B4_367 0.42 -0.2 435,881 - Pf1N1B4_367 0.42 +2.1 435,881 - Pf1N1B4_367 0.42 +1.5 435,881 - Pf1N1B4_367 0.42 -0.2 436,073 - Pf1N1B4_367 0.55 -0.2 436,084 + Pf1N1B4_367 0.56 +0.7 436,084 + Pf1N1B4_367 0.56 +1.4 436,084 + Pf1N1B4_367 0.56 +0.5
Or see this region's nucleotide sequence