Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3104

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3103 and Pf1N1B4_3104 are separated by 155 nucleotidesPf1N1B4_3104 and Pf1N1B4_3105 are separated by 171 nucleotidesPf1N1B4_3105 and Pf1N1B4_3106 are separated by 56 nucleotides Pf1N1B4_3103 - 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55), at 3,490,456 to 3,491,301 _3103 Pf1N1B4_3104 - Enolase (EC 4.2.1.11), at 3,491,457 to 3,492,746 _3104 Pf1N1B4_3105 - Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage, at 3,492,918 to 3,493,196 _3105 Pf1N1B4_3106 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60), at 3,493,253 to 3,493,900 _3106 Position (kb) 3491 3492 3493Strain fitness (log2 ratio) -2 -1 0 1at 3491.322 kb on + strandat 3491.322 kb on + strandat 3492.213 kb on + strand, within Pf1N1B4_3104at 3492.228 kb on + strand, within Pf1N1B4_3104at 3492.228 kb on + strand, within Pf1N1B4_3104at 3492.669 kb on + strandat 3492.669 kb on + strandat 3492.669 kb on + strandat 3492.669 kb on + strandat 3492.717 kb on + strandat 3492.717 kb on + strandat 3492.717 kb on + strandat 3492.717 kb on + strandat 3492.717 kb on + strandat 3492.717 kb on + strandat 3492.717 kb on + strandat 3492.751 kb on + strandat 3492.824 kb on + strandat 3492.824 kb on + strandat 3492.824 kb on + strandat 3493.198 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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3,491,322 + +0.7
3,491,322 + +0.1
3,492,213 + Pf1N1B4_3104 0.59 -1.5
3,492,228 + Pf1N1B4_3104 0.60 -2.0
3,492,228 + Pf1N1B4_3104 0.60 -1.0
3,492,669 + -2.6
3,492,669 + -2.0
3,492,669 + +0.1
3,492,669 + -0.0
3,492,717 + -0.0
3,492,717 + +0.4
3,492,717 + +0.5
3,492,717 + -1.2
3,492,717 + +0.1
3,492,717 + -0.2
3,492,717 + -1.7
3,492,751 + -0.9
3,492,824 + -0.0
3,492,824 + +0.7
3,492,824 + -0.1
3,493,198 + -1.4

Or see this region's nucleotide sequence