Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2515

Experiment: D-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_2514 and Pf1N1B4_2515 are separated by 481 nucleotidesPf1N1B4_2515 and Pf1N1B4_2516 are separated by 199 nucleotides Pf1N1B4_2514 - DNA primase (EC 2.7.7.-), at 2,852,825 to 2,854,798 _2514 Pf1N1B4_2515 - SSU ribosomal protein S21p, at 2,855,280 to 2,855,495 _2515 Pf1N1B4_2516 - TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA, at 2,855,695 to 2,856,720 _2516 Position (kb) 2855 2856Strain fitness (log2 ratio) -1 0 1 2at 2854.924 kb on - strandat 2854.924 kb on - strandat 2854.924 kb on - strandat 2854.951 kb on - strandat 2854.951 kb on - strandat 2854.951 kb on - strandat 2854.951 kb on - strandat 2854.951 kb on - strandat 2854.961 kb on - strandat 2855.679 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
remove
2,854,924 - +0.2
2,854,924 - +2.5
2,854,924 - +0.5
2,854,951 - -0.4
2,854,951 - -0.5
2,854,951 - +0.7
2,854,951 - +0.6
2,854,951 - -1.0
2,854,961 - +1.3
2,855,679 + +1.5

Or see this region's nucleotide sequence