Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_201

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_199 and Pf1N1B4_200 are separated by 35 nucleotidesPf1N1B4_200 and Pf1N1B4_201 overlap by 4 nucleotidesPf1N1B4_201 and Pf1N1B4_202 overlap by 1 nucleotidesPf1N1B4_202 and Pf1N1B4_203 are separated by 0 nucleotides Pf1N1B4_199 - FIG049111: Hypothetical protein in pyoverdin gene cluster, at 246,629 to 247,204 _199 Pf1N1B4_200 - FIG014801: Cation ABC transporter, periplasmic cation-binding protein, at 247,240 to 248,169 _200 Pf1N1B4_201 - ABC transporter in pyoverdin gene cluster, ATP-binding component, at 248,166 to 249,017 _201 Pf1N1B4_202 - ABC transporter in pyoverdin gene cluster, permease component, at 249,017 to 249,916 _202 Pf1N1B4_203 - ABC transporter in pyoverdin gene cluster, periplasmic component, at 249,917 to 250,888 _203 Position (kb) 248 249 250Strain fitness (log2 ratio) -2 -1 0 1 2at 247.245 kb on + strandat 247.246 kb on - strandat 247.246 kb on - strandat 247.246 kb on - strandat 247.246 kb on - strandat 247.369 kb on + strandat 247.369 kb on + strand, within Pf1N1B4_200at 247.370 kb on - strand, within Pf1N1B4_200at 247.372 kb on + strand, within Pf1N1B4_200at 247.372 kb on + strand, within Pf1N1B4_200at 247.372 kb on + strand, within Pf1N1B4_200at 247.372 kb on + strand, within Pf1N1B4_200at 247.373 kb on - strand, within Pf1N1B4_200at 247.373 kb on - strand, within Pf1N1B4_200at 247.373 kb on - strand, within Pf1N1B4_200at 247.373 kb on - strand, within Pf1N1B4_200at 247.373 kb on - strand, within Pf1N1B4_200at 247.378 kb on + strand, within Pf1N1B4_200at 247.378 kb on + strand, within Pf1N1B4_200at 247.378 kb on + strand, within Pf1N1B4_200at 247.378 kb on + strand, within Pf1N1B4_200at 247.379 kb on - strand, within Pf1N1B4_200at 247.379 kb on - strand, within Pf1N1B4_200at 247.379 kb on - strand, within Pf1N1B4_200at 247.379 kb on - strand, within Pf1N1B4_200at 247.451 kb on - strand, within Pf1N1B4_200at 247.451 kb on - strand, within Pf1N1B4_200at 247.502 kb on + strand, within Pf1N1B4_200at 247.502 kb on + strand, within Pf1N1B4_200at 247.506 kb on + strand, within Pf1N1B4_200at 247.744 kb on + strand, within Pf1N1B4_200at 247.867 kb on + strand, within Pf1N1B4_200at 247.868 kb on - strand, within Pf1N1B4_200at 248.020 kb on + strand, within Pf1N1B4_200at 248.020 kb on + strand, within Pf1N1B4_200at 248.021 kb on - strand, within Pf1N1B4_200at 248.524 kb on - strand, within Pf1N1B4_201at 248.558 kb on - strand, within Pf1N1B4_201at 248.624 kb on + strand, within Pf1N1B4_201at 248.625 kb on - strand, within Pf1N1B4_201at 248.632 kb on - strand, within Pf1N1B4_201at 249.023 kb on + strandat 249.024 kb on - strandat 249.251 kb on + strandat 249.251 kb on + strand, within Pf1N1B4_202at 249.252 kb on - strandat 249.264 kb on - strandat 249.311 kb on + strand, within Pf1N1B4_202at 249.311 kb on + strandat 249.311 kb on + strandat 249.311 kb on + strand, within Pf1N1B4_202at 249.311 kb on + strand, within Pf1N1B4_202at 249.312 kb on - strand, within Pf1N1B4_202at 249.315 kb on + strand, within Pf1N1B4_202at 249.315 kb on + strand, within Pf1N1B4_202at 249.316 kb on - strand, within Pf1N1B4_202at 249.316 kb on - strand, within Pf1N1B4_202at 249.326 kb on - strand, within Pf1N1B4_202at 249.533 kb on + strand, within Pf1N1B4_202at 249.533 kb on + strand, within Pf1N1B4_202at 249.534 kb on - strand, within Pf1N1B4_202at 249.608 kb on + strand, within Pf1N1B4_202

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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247,245 + +0.1
247,246 - +2.3
247,246 - +0.4
247,246 - -0.1
247,246 - -0.0
247,369 + +1.0
247,369 + Pf1N1B4_200 0.14 -1.5
247,370 - Pf1N1B4_200 0.14 +0.2
247,372 + Pf1N1B4_200 0.14 -0.8
247,372 + Pf1N1B4_200 0.14 +0.4
247,372 + Pf1N1B4_200 0.14 +0.1
247,372 + Pf1N1B4_200 0.14 +0.3
247,373 - Pf1N1B4_200 0.14 -0.0
247,373 - Pf1N1B4_200 0.14 -0.6
247,373 - Pf1N1B4_200 0.14 -0.0
247,373 - Pf1N1B4_200 0.14 +1.2
247,373 - Pf1N1B4_200 0.14 -0.1
247,378 + Pf1N1B4_200 0.15 -1.4
247,378 + Pf1N1B4_200 0.15 +0.7
247,378 + Pf1N1B4_200 0.15 +0.2
247,378 + Pf1N1B4_200 0.15 +1.0
247,379 - Pf1N1B4_200 0.15 +1.3
247,379 - Pf1N1B4_200 0.15 -0.4
247,379 - Pf1N1B4_200 0.15 -0.4
247,379 - Pf1N1B4_200 0.15 -0.0
247,451 - Pf1N1B4_200 0.23 -0.4
247,451 - Pf1N1B4_200 0.23 -1.4
247,502 + Pf1N1B4_200 0.28 +0.2
247,502 + Pf1N1B4_200 0.28 +0.5
247,506 + Pf1N1B4_200 0.29 -0.3
247,744 + Pf1N1B4_200 0.54 -0.0
247,867 + Pf1N1B4_200 0.67 +1.0
247,868 - Pf1N1B4_200 0.68 -1.0
248,020 + Pf1N1B4_200 0.84 -1.8
248,020 + Pf1N1B4_200 0.84 +0.2
248,021 - Pf1N1B4_200 0.84 -0.6
248,524 - Pf1N1B4_201 0.42 -2.2
248,558 - Pf1N1B4_201 0.46 -0.6
248,624 + Pf1N1B4_201 0.54 -1.0
248,625 - Pf1N1B4_201 0.54 -1.4
248,632 - Pf1N1B4_201 0.55 +0.3
249,023 + +0.5
249,024 - -1.0
249,251 + +0.2
249,251 + Pf1N1B4_202 0.26 -0.3
249,252 - -1.4
249,264 - -0.0
249,311 + Pf1N1B4_202 0.33 -0.0
249,311 + +1.0
249,311 + -1.6
249,311 + Pf1N1B4_202 0.33 +0.6
249,311 + Pf1N1B4_202 0.33 +1.0
249,312 - Pf1N1B4_202 0.33 -0.0
249,315 + Pf1N1B4_202 0.33 +0.4
249,315 + Pf1N1B4_202 0.33 -2.6
249,316 - Pf1N1B4_202 0.33 -1.8
249,316 - Pf1N1B4_202 0.33 -0.6
249,326 - Pf1N1B4_202 0.34 -0.4
249,533 + Pf1N1B4_202 0.57 +0.5
249,533 + Pf1N1B4_202 0.57 +0.1
249,534 - Pf1N1B4_202 0.57 -1.4
249,608 + Pf1N1B4_202 0.66 -1.2

Or see this region's nucleotide sequence