Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_120 and Pf1N1B4_121 are separated by 233 nucleotides Pf1N1B4_121 and Pf1N1B4_122 overlap by 4 nucleotides
Pf1N1B4_120 - Channel-forming transporter/cytolysins activator of TpsB family, at 130,211 to 131,938
_120
Pf1N1B4_121 - Membrane fusion component of tripartite multidrug resistance system, at 132,172 to 133,293
_121
Pf1N1B4_122 - Inner membrane component of tripartite multidrug resistance system, at 133,290 to 134,882
_122
Position (kb) 132
133
134 Strain fitness (log2 ratio) -1
0
1
2 at 131.514 kb on + strand, within Pf1N1B4_120 at 131.514 kb on + strand, within Pf1N1B4_120 at 131.529 kb on + strand at 131.529 kb on + strand, within Pf1N1B4_120 at 131.529 kb on + strand, within Pf1N1B4_120 at 131.994 kb on - strand at 132.031 kb on - strand at 132.031 kb on - strand at 132.163 kb on + strand at 132.163 kb on + strand at 132.164 kb on - strand at 132.164 kb on - strand at 132.267 kb on + strand at 132.349 kb on + strand, within Pf1N1B4_121 at 132.349 kb on + strand, within Pf1N1B4_121 at 132.350 kb on - strand, within Pf1N1B4_121 at 132.524 kb on + strand, within Pf1N1B4_121 at 132.641 kb on - strand, within Pf1N1B4_121 at 132.856 kb on + strand, within Pf1N1B4_121 at 132.968 kb on + strand, within Pf1N1B4_121 at 133.429 kb on + strand at 133.833 kb on + strand, within Pf1N1B4_122 at 133.834 kb on - strand, within Pf1N1B4_122 at 133.930 kb on - strand, within Pf1N1B4_122 at 133.975 kb on - strand, within Pf1N1B4_122 at 134.187 kb on + strand, within Pf1N1B4_122 at 134.293 kb on - strand, within Pf1N1B4_122
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 131,514 + Pf1N1B4_120 0.75 +0.2 131,514 + Pf1N1B4_120 0.75 +0.7 131,529 + +1.0 131,529 + Pf1N1B4_120 0.76 -0.5 131,529 + Pf1N1B4_120 0.76 -0.9 131,994 - -0.2 132,031 - -0.0 132,031 - +0.6 132,163 + +2.0 132,163 + -0.6 132,164 - +0.1 132,164 - +1.0 132,267 + +0.4 132,349 + Pf1N1B4_121 0.16 +1.6 132,349 + Pf1N1B4_121 0.16 +0.6 132,350 - Pf1N1B4_121 0.16 +0.1 132,524 + Pf1N1B4_121 0.31 +1.6 132,641 - Pf1N1B4_121 0.42 -0.1 132,856 + Pf1N1B4_121 0.61 +1.0 132,968 + Pf1N1B4_121 0.71 -0.2 133,429 + -0.2 133,833 + Pf1N1B4_122 0.34 +0.0 133,834 - Pf1N1B4_122 0.34 +0.4 133,930 - Pf1N1B4_122 0.40 +0.4 133,975 - Pf1N1B4_122 0.43 +1.0 134,187 + Pf1N1B4_122 0.56 +0.3 134,293 - Pf1N1B4_122 0.63 -0.0
Or see this region's nucleotide sequence