Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1165

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1164 and Pf1N1B4_1165 are separated by 78 nucleotidesPf1N1B4_1165 and Pf1N1B4_1166 are separated by 16 nucleotidesPf1N1B4_1166 and Pf1N1B4_1167 are separated by 8 nucleotides Pf1N1B4_1164 - Triosephosphate isomerase (EC 5.3.1.1), at 1,312,843 to 1,313,586 _1164 Pf1N1B4_1165 - Phosphoglucosamine mutase (EC 5.4.2.10), at 1,313,665 to 1,315,002 _1165 Pf1N1B4_1166 - Dihydropteroate synthase (EC 2.5.1.15), at 1,315,019 to 1,315,870 _1166 Pf1N1B4_1167 - Cell division protein FtsH (EC 3.4.24.-), at 1,315,879 to 1,317,789 _1167 Position (kb) 1313 1314 1315 1316Strain fitness (log2 ratio) -2 -1 0 1 2at 1313.297 kb on - strand, within Pf1N1B4_1164at 1313.604 kb on - strandat 1313.604 kb on - strandat 1313.684 kb on - strandat 1313.684 kb on - strandat 1315.003 kb on - strandat 1315.003 kb on - strandat 1315.003 kb on - strandat 1315.003 kb on - strandat 1315.003 kb on - strandat 1315.003 kb on - strandat 1315.007 kb on - strandat 1315.007 kb on - strandat 1315.007 kb on - strandat 1315.007 kb on - strandat 1315.007 kb on - strandat 1315.007 kb on - strandat 1315.007 kb on - strandat 1315.007 kb on - strandat 1315.007 kb on - strandat 1315.007 kb on - strandat 1315.007 kb on - strandat 1315.007 kb on - strandat 1315.021 kb on - strandat 1315.881 kb on - strandat 1315.881 kb on - strandat 1315.881 kb on - strandat 1315.883 kb on - strandat 1315.883 kb on - strandat 1315.883 kb on - strandat 1315.883 kb on - strandat 1315.883 kb on - strandat 1315.883 kb on - strandat 1315.883 kb on - strandat 1315.953 kb on + strandat 1315.953 kb on + strandat 1315.953 kb on + strandat 1315.954 kb on - strandat 1315.954 kb on - strandat 1315.954 kb on - strandat 1315.954 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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1,313,297 - Pf1N1B4_1164 0.61 -0.2
1,313,604 - +0.5
1,313,604 - +1.4
1,313,684 - -0.9
1,313,684 - +1.2
1,315,003 - -0.6
1,315,003 - -0.3
1,315,003 - -1.1
1,315,003 - -1.6
1,315,003 - -0.5
1,315,003 - +0.4
1,315,007 - +0.7
1,315,007 - -0.9
1,315,007 - +1.1
1,315,007 - -0.2
1,315,007 - -1.1
1,315,007 - -0.6
1,315,007 - -0.2
1,315,007 - -1.3
1,315,007 - -0.4
1,315,007 - -0.3
1,315,007 - -0.8
1,315,007 - -0.2
1,315,021 - +2.0
1,315,881 - -0.9
1,315,881 - +1.0
1,315,881 - +0.1
1,315,883 - -0.3
1,315,883 - -0.4
1,315,883 - +0.0
1,315,883 - -0.2
1,315,883 - -0.6
1,315,883 - -1.4
1,315,883 - -0.2
1,315,953 + +0.4
1,315,953 + +0.4
1,315,953 + -2.3
1,315,954 - -0.7
1,315,954 - -0.8
1,315,954 - +0.3
1,315,954 - -0.4

Or see this region's nucleotide sequence