Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1164

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1163 and Pf1N1B4_5176 are separated by 141 nucleotidesPf1N1B4_5176 and Pf1N1B4_5177 are separated by 99 nucleotidesPf1N1B4_5177 and Pf1N1B4_1164 are separated by 410 nucleotidesPf1N1B4_1164 and Pf1N1B4_1165 are separated by 78 nucleotides Pf1N1B4_1163 - FIG000325: clustered with transcription termination protein NusA, at 1,311,577 to 1,312,035 _1163 Pf1N1B4_5176 - tRNA-Met-CAT, at 1,312,177 to 1,312,250 _5176 Pf1N1B4_5177 - tRNA-Leu-GAG, at 1,312,350 to 1,312,432 _5177 Pf1N1B4_1164 - Triosephosphate isomerase (EC 5.3.1.1), at 1,312,843 to 1,313,586 _1164 Pf1N1B4_1165 - Phosphoglucosamine mutase (EC 5.4.2.10), at 1,313,665 to 1,315,002 _1165 Position (kb) 1312 1313 1314Strain fitness (log2 ratio) -1 0 1 2at 1312.056 kb on - strandat 1312.056 kb on - strandat 1312.056 kb on - strandat 1312.056 kb on - strandat 1312.056 kb on - strandat 1312.056 kb on - strandat 1312.299 kb on - strandat 1312.299 kb on - strandat 1312.311 kb on - strandat 1312.311 kb on - strandat 1312.344 kb on - strandat 1312.436 kb on - strandat 1312.439 kb on - strandat 1312.439 kb on - strandat 1312.439 kb on - strandat 1312.439 kb on - strandat 1312.457 kb on - strandat 1312.457 kb on - strandat 1312.457 kb on - strandat 1312.457 kb on - strandat 1313.297 kb on - strand, within Pf1N1B4_1164at 1313.604 kb on - strandat 1313.604 kb on - strandat 1313.684 kb on - strandat 1313.684 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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1,312,056 - -0.2
1,312,056 - -1.1
1,312,056 - -0.7
1,312,056 - +1.0
1,312,056 - +0.2
1,312,056 - +0.8
1,312,299 - +0.8
1,312,299 - +0.6
1,312,311 - +1.5
1,312,311 - -0.6
1,312,344 - +1.7
1,312,436 - +0.1
1,312,439 - +2.4
1,312,439 - +0.3
1,312,439 - -0.2
1,312,439 - +0.9
1,312,457 - -1.4
1,312,457 - +2.2
1,312,457 - -0.5
1,312,457 - +1.1
1,313,297 - Pf1N1B4_1164 0.61 -0.2
1,313,604 - +0.5
1,313,604 - +1.4
1,313,684 - -0.9
1,313,684 - +1.2

Or see this region's nucleotide sequence