Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16780

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
3,675,500	-		LRK54_RS16770	0.31	-1.2
3,675,572	+		LRK54_RS16770	0.41	-0.5
3,675,572	+		LRK54_RS16770	0.41	-0.2
3,675,573	-		LRK54_RS16770	0.41	-0.7
3,675,573	-		LRK54_RS16770	0.41	+0.1
3,675,573	-		LRK54_RS16770	0.41	-0.2
3,675,700	+		LRK54_RS16770	0.59	+0.3
3,675,700	+		LRK54_RS16770	0.59	+0.1
3,675,700	+		LRK54_RS16770	0.59	+1.0
3,675,701	-		LRK54_RS16770	0.59	-0.9
3,675,701	-		LRK54_RS16770	0.59	-0.0
3,675,701	-		LRK54_RS16770	0.59	-0.1
3,675,701	-		LRK54_RS16770	0.59	+0.3
3,675,701	-		LRK54_RS16770	0.59	-1.2
3,675,800	+		LRK54_RS16770	0.73	-0.2
3,675,800	+		LRK54_RS16770	0.73	-0.3
3,675,800	+		LRK54_RS16770	0.73	-0.2
3,675,800	+		LRK54_RS16770	0.73	-0.0
3,675,800	+		LRK54_RS16770	0.73	-0.0
3,675,801	-		LRK54_RS16770	0.74	+1.6
3,675,801	-		LRK54_RS16770	0.74	+0.2
3,675,801	-		LRK54_RS16770	0.74	+0.5
3,675,801	-		LRK54_RS16770	0.74	+0.3
3,675,865	+		LRK54_RS16770	0.83	-0.2
3,675,865	+		LRK54_RS16770	0.83	+0.3
3,675,865	+		LRK54_RS16770	0.83	+0.3
3,675,865	+		LRK54_RS16770	0.83	+0.2
3,675,865	+		LRK54_RS16770	0.83	+0.3
3,675,865	+		LRK54_RS16770	0.83	-0.3
3,675,865	+		LRK54_RS16770	0.83	+1.4
3,675,865	+		LRK54_RS16770	0.83	+0.2
3,675,865	+		LRK54_RS16770	0.83	+0.3
3,675,865	+		LRK54_RS16770	0.83	-0.4
3,675,866	-		LRK54_RS16770	0.83	-0.3
3,675,866	-		LRK54_RS16770	0.83	-0.1
3,675,866	-		LRK54_RS16770	0.83	+0.4
3,675,866	-		LRK54_RS16770	0.83	+0.2
3,675,866	-		LRK54_RS16770	0.83	+0.2
3,675,866	-		LRK54_RS16770	0.83	+0.5
3,675,866	-		LRK54_RS16770	0.83	-0.2
3,675,866	-		LRK54_RS16770	0.83	-0.1
3,675,929	+				-1.0
3,676,000	+				-1.5
3,676,000	+				+0.6
3,676,000	+				+0.3
3,676,000	+				-1.0
3,676,000	+				+0.1
3,676,000	+				-0.7
3,676,000	+				+0.3
3,676,000	+				+0.0
3,676,000	+				-0.3
3,676,000	+				-0.3
3,676,000	+				+0.1
3,676,000	+				+0.2
3,676,000	+				-0.5
3,676,000	+				-0.7
3,676,000	+				+0.7
3,676,000	+				-0.4
3,676,000	+				+0.1
3,676,000	+				-0.4
3,676,000	+				-1.6
3,676,000	+				-0.8
3,676,000	+				-0.1
3,676,001	-				-0.4
3,676,001	-				-0.8
3,676,001	-				-0.2
3,676,001	-				+0.0
3,676,001	-				-0.9
3,676,001	-				+0.1
3,676,001	-				+0.2
3,676,001	-				+0.9
3,676,001	-				+0.0
3,676,001	-				-0.8
3,676,001	-				+0.3
3,676,001	-				-0.4
3,676,001	-				+0.4
3,676,001	-				-0.2
3,676,001	-				+0.1
3,676,001	-				+1.1
3,676,001	-				-0.4
3,676,001	-				+0.6
3,676,034	-				-0.4
3,677,408	+				-0.5
3,677,408	+				-0.4
3,677,409	-				+0.5
3,677,510	+				+0.0
3,677,510	+				-0.4
3,677,511	-				+0.6
3,677,536	+				-0.6
3,677,545	+				-0.9
3,677,545	+				-1.6
3,677,545	+				-0.4
3,677,546	-				-0.0
3,677,546	-				-0.8
3,677,568	+				-0.6
3,677,568	+				+1.2
3,677,568	+				-1.3
3,677,568	+				-0.1
3,677,568	+				-1.9
3,677,568	+				+0.3
3,677,569	-				-0.2
3,677,569	-				-0.9
3,677,569	-				+0.0
3,677,592	+				-1.1
3,677,593	-				-0.6
3,677,646	+				-0.1
3,677,646	+				-0.2
3,677,647	-				-0.1
3,677,647	-				-0.3
3,677,647	-				+0.5
3,677,647	-				-1.1
3,677,754	+				+0.4
3,677,754	+				-0.2
3,677,754	+				-0.4
3,677,754	+				+0.4
3,677,754	+				-0.9
3,677,754	+				+0.1
3,677,755	-				-0.4
3,677,755	-				+0.0
3,677,755	-				-0.5
3,677,755	-				+0.0
3,677,755	-				+0.2
3,677,755	-				+0.5
3,677,755	-				+0.2
3,677,755	-				+2.2
3,677,755	-				-0.0
3,677,755	-				-1.0
3,677,755	-				-0.3
3,677,824	+		LRK54_RS16785	0.12	-1.1
3,677,824	+		LRK54_RS16785	0.12	-1.6
3,677,824	+		LRK54_RS16785	0.12	-0.1
3,677,825	-		LRK54_RS16785	0.12	+0.6
3,677,825	-		LRK54_RS16785	0.12	-1.7
3,677,825	-		LRK54_RS16785	0.12	-0.8
3,677,825	-		LRK54_RS16785	0.12	+0.5
3,677,837	+		LRK54_RS16785	0.13	-0.8
3,677,837	+		LRK54_RS16785	0.13	-0.5
3,677,837	+		LRK54_RS16785	0.13	+0.3
3,677,837	+		LRK54_RS16785	0.13	-0.7
3,677,838	-		LRK54_RS16785	0.13	-0.6
3,677,838	-		LRK54_RS16785	0.13	-0.2
3,677,893	-		LRK54_RS16785	0.18	-0.8
3,677,961	-		LRK54_RS16785	0.23	-1.1
3,678,006	+		LRK54_RS16785	0.27	-0.3
3,678,006	+		LRK54_RS16785	0.27	+0.5
3,678,006	+		LRK54_RS16785	0.27	+0.0
3,678,006	+		LRK54_RS16785	0.27	+0.2
3,678,006	+		LRK54_RS16785	0.27	+0.4
3,678,006	+		LRK54_RS16785	0.27	-0.6
3,678,006	+		LRK54_RS16785	0.27	-0.6
3,678,006	+		LRK54_RS16785	0.27	-0.4
3,678,006	+		LRK54_RS16785	0.27	-0.3
3,678,006	+		LRK54_RS16785	0.27	-1.5
3,678,006	+		LRK54_RS16785	0.27	+0.2
3,678,006	+		LRK54_RS16785	0.27	-2.8
3,678,006	+		LRK54_RS16785	0.27	+1.3
3,678,006	+		LRK54_RS16785	0.27	-0.6
3,678,006	+		LRK54_RS16785	0.27	-0.8
3,678,006	+		LRK54_RS16785	0.27	-0.2
3,678,006	+		LRK54_RS16785	0.27	-0.2
3,678,006	+		LRK54_RS16785	0.27	+0.0
3,678,006	+		LRK54_RS16785	0.27	+0.9
3,678,006	+		LRK54_RS16785	0.27	+0.5
3,678,006	+		LRK54_RS16785	0.27	-0.5
3,678,006	+		LRK54_RS16785	0.27	+0.2
3,678,006	+		LRK54_RS16785	0.27	-0.2
3,678,006	+		LRK54_RS16785	0.27	-0.6
3,678,006	+		LRK54_RS16785	0.27	-1.8
3,678,006	+		LRK54_RS16785	0.27	-0.9
3,678,006	+		LRK54_RS16785	0.27	+0.1
3,678,006	+		LRK54_RS16785	0.27	-0.2
3,678,006	+		LRK54_RS16785	0.27	-1.3
3,678,006	+		LRK54_RS16785	0.27	-1.2
3,678,006	+		LRK54_RS16785	0.27	-0.6
3,678,006	+		LRK54_RS16785	0.27	+0.3
3,678,006	+		LRK54_RS16785	0.27	-0.8
3,678,006	+		LRK54_RS16785	0.27	-1.3
3,678,006	+		LRK54_RS16785	0.27	+0.1
3,678,006	+		LRK54_RS16785	0.27	-1.1
3,678,006	+		LRK54_RS16785	0.27	+0.4
3,678,006	+		LRK54_RS16785	0.27	+0.1
3,678,006	+		LRK54_RS16785	0.27	+0.0
3,678,006	+		LRK54_RS16785	0.27	+0.3
3,678,007	-		LRK54_RS16785	0.27	-0.3
3,678,007	-		LRK54_RS16785	0.27	-0.8
3,678,007	-		LRK54_RS16785	0.27	-0.1
3,678,007	-		LRK54_RS16785	0.27	-1.0
3,678,007	-		LRK54_RS16785	0.27	-0.6
3,678,007	-		LRK54_RS16785	0.27	-1.7
3,678,007	-		LRK54_RS16785	0.27	-1.0
3,678,007	-		LRK54_RS16785	0.27	-0.4
3,678,007	-		LRK54_RS16785	0.27	-0.7
3,678,007	-		LRK54_RS16785	0.27	-1.0
3,678,007	-		LRK54_RS16785	0.27	+0.3
3,678,007	-		LRK54_RS16785	0.27	+0.7
3,678,007	-		LRK54_RS16785	0.27	+1.3
3,678,007	-		LRK54_RS16785	0.27	-0.1
3,678,007	-		LRK54_RS16785	0.27	+0.5
3,678,007	-		LRK54_RS16785	0.27	+0.3
3,678,007	-		LRK54_RS16785	0.27	-0.1
3,678,007	-		LRK54_RS16785	0.27	-0.5
3,678,007	-		LRK54_RS16785	0.27	-0.0
3,678,007	-		LRK54_RS16785	0.27	+3.0
3,678,007	-		LRK54_RS16785	0.27	-1.3
3,678,007	-		LRK54_RS16785	0.27	-1.2
3,678,007	-		LRK54_RS16785	0.27	+0.7
3,678,007	-		LRK54_RS16785	0.27	+0.4
3,678,007	-		LRK54_RS16785	0.27	-0.4
3,678,007	-		LRK54_RS16785	0.27	-0.7
3,678,007	-		LRK54_RS16785	0.27	-1.8
3,678,007	-		LRK54_RS16785	0.27	-0.3
3,678,007	-		LRK54_RS16785	0.27	+0.5
3,678,007	-		LRK54_RS16785	0.27	-0.9
3,678,007	-		LRK54_RS16785	0.27	-1.2
3,678,007	-		LRK54_RS16785	0.27	+0.2
3,678,007	-		LRK54_RS16785	0.27	-1.0
3,678,008	+		LRK54_RS16785	0.27	+0.5
3,678,008	+		LRK54_RS16785	0.27	-0.5
3,678,008	+		LRK54_RS16785	0.27	-1.0
3,678,009	-		LRK54_RS16785	0.27	-0.1
3,678,020	+		LRK54_RS16785	0.28	+0.8
3,678,020	+		LRK54_RS16785	0.28	+0.1
3,678,020	+		LRK54_RS16785	0.28	+0.2
3,678,020	+		LRK54_RS16785	0.28	-0.1
3,678,020	+		LRK54_RS16785	0.28	+0.0
3,678,020	+		LRK54_RS16785	0.28	-0.2
3,678,020	+		LRK54_RS16785	0.28	+0.5
3,678,020	+		LRK54_RS16785	0.28	+0.3
3,678,020	+		LRK54_RS16785	0.28	-0.7
3,678,020	+		LRK54_RS16785	0.28	-1.5
3,678,020	+		LRK54_RS16785	0.28	+0.1
3,678,020	+		LRK54_RS16785	0.28	-0.1
3,678,020	+		LRK54_RS16785	0.28	-0.4
3,678,020	+		LRK54_RS16785	0.28	+0.3
3,678,020	+		LRK54_RS16785	0.28	-1.4
3,678,020	+		LRK54_RS16785	0.28	+1.0
3,678,021	-		LRK54_RS16785	0.28	+0.1
3,678,021	-		LRK54_RS16785	0.28	-0.6
3,678,021	-		LRK54_RS16785	0.28	+0.5
3,678,021	-		LRK54_RS16785	0.28	-0.9
3,678,021	-		LRK54_RS16785	0.28	-0.2
3,678,021	-		LRK54_RS16785	0.28	-0.5
3,678,021	-		LRK54_RS16785	0.28	-0.1
3,678,021	-		LRK54_RS16785	0.28	+0.2
3,678,021	-		LRK54_RS16785	0.28	-0.7
3,678,021	-		LRK54_RS16785	0.28	-0.1
3,678,021	-		LRK54_RS16785	0.28	+0.1
3,678,021	-		LRK54_RS16785	0.28	+0.3
3,678,021	-		LRK54_RS16785	0.28	+0.4
3,678,021	-		LRK54_RS16785	0.28	-0.6
3,678,021	-		LRK54_RS16785	0.28	+0.3
3,678,021	-		LRK54_RS16785	0.28	-0.8
3,678,062	+		LRK54_RS16785	0.31	+0.9
3,678,062	+		LRK54_RS16785	0.31	+0.9
3,678,063	-		LRK54_RS16785	0.31	-0.4
3,678,063	-		LRK54_RS16785	0.31	+0.3
3,678,063	-		LRK54_RS16785	0.31	-0.4
3,678,078	+		LRK54_RS16785	0.32	-0.0
3,678,078	+		LRK54_RS16785	0.32	-1.0
3,678,078	+		LRK54_RS16785	0.32	+1.3
3,678,078	+		LRK54_RS16785	0.32	-0.1
3,678,079	-		LRK54_RS16785	0.33	-0.8
3,678,079	-		LRK54_RS16785	0.33	-0.3
3,678,079	-		LRK54_RS16785	0.33	-0.5
3,678,079	-		LRK54_RS16785	0.33	-1.5
3,678,079	-		LRK54_RS16785	0.33	-1.7
3,678,079	-		LRK54_RS16785	0.33	-0.3
3,678,079	-		LRK54_RS16785	0.33	-1.4
3,678,079	-		LRK54_RS16785	0.33	-0.1