Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23340 and HSERO_RS23345 are separated by 24 nucleotides HSERO_RS23345 and HSERO_RS23350 are separated by 13 nucleotides HSERO_RS23350 and HSERO_RS23355 are separated by 15 nucleotides HSERO_RS23355 and HSERO_RS23360 are separated by 122 nucleotides
HSERO_RS23340: HSERO_RS23340 - lipoprotein, at 5,357,604 to 5,358,740
_RS23340
HSERO_RS23345: HSERO_RS23345 - 16S rRNA methyltransferase, at 5,358,765 to 5,359,700
_RS23345
HSERO_RS23350: HSERO_RS23350 - glycosylase, at 5,359,714 to 5,360,997
_RS23350
HSERO_RS23355: HSERO_RS23355 - hypothetical protein, at 5,361,013 to 5,361,381
_RS23355
HSERO_RS23360: HSERO_RS23360 - phosphoheptose isomerase, at 5,361,504 to 5,362,100
_RS23360
Position (kb) 5359
5360
5361 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5358.722 kb on + strand at 5358.799 kb on - strand at 5358.859 kb on + strand, within HSERO_RS23345 at 5358.959 kb on + strand, within HSERO_RS23345 at 5359.134 kb on + strand, within HSERO_RS23345 at 5359.135 kb on + strand, within HSERO_RS23345 at 5359.167 kb on + strand at 5359.376 kb on + strand, within HSERO_RS23345 at 5359.550 kb on - strand, within HSERO_RS23345 at 5359.576 kb on - strand, within HSERO_RS23345 at 5359.591 kb on - strand, within HSERO_RS23345 at 5360.083 kb on - strand, within HSERO_RS23350 at 5360.140 kb on + strand, within HSERO_RS23350 at 5360.583 kb on + strand, within HSERO_RS23350 at 5360.670 kb on + strand, within HSERO_RS23350 at 5360.676 kb on + strand, within HSERO_RS23350 at 5360.804 kb on + strand, within HSERO_RS23350 at 5360.810 kb on - strand, within HSERO_RS23350 at 5360.812 kb on - strand, within HSERO_RS23350 at 5360.814 kb on + strand, within HSERO_RS23350 at 5360.984 kb on - strand at 5361.026 kb on - strand at 5361.184 kb on - strand, within HSERO_RS23355 at 5361.222 kb on - strand, within HSERO_RS23355
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 5,358,722 + -0.3 5,358,799 - +0.4 5,358,859 + HSERO_RS23345 0.10 +0.4 5,358,959 + HSERO_RS23345 0.21 +0.5 5,359,134 + HSERO_RS23345 0.39 -0.0 5,359,135 + HSERO_RS23345 0.40 -0.5 5,359,167 + +1.4 5,359,376 + HSERO_RS23345 0.65 +0.2 5,359,550 - HSERO_RS23345 0.84 -2.0 5,359,576 - HSERO_RS23345 0.87 +0.6 5,359,591 - HSERO_RS23345 0.88 +0.4 5,360,083 - HSERO_RS23350 0.29 +1.1 5,360,140 + HSERO_RS23350 0.33 +2.1 5,360,583 + HSERO_RS23350 0.68 +0.6 5,360,670 + HSERO_RS23350 0.74 -1.1 5,360,676 + HSERO_RS23350 0.75 +0.4 5,360,804 + HSERO_RS23350 0.85 +0.6 5,360,810 - HSERO_RS23350 0.85 +1.6 5,360,812 - HSERO_RS23350 0.86 -1.0 5,360,814 + HSERO_RS23350 0.86 +1.3 5,360,984 - +0.1 5,361,026 - -0.1 5,361,184 - HSERO_RS23355 0.46 +1.9 5,361,222 - HSERO_RS23355 0.57 -1.0
Or see this region's nucleotide sequence