Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS11735

Experiment: D-Xylose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Xylose (C)
2,662,914	-				+0.0
2,663,133	+				+0.5
2,663,134	-				-0.3
2,663,256	-				+0.4
2,663,371	+				-0.0
2,663,459	+				+2.6
2,663,617	-				-4.4
2,663,644	+				+0.1
2,663,659	+				+0.0
2,663,667	-				+0.6
2,664,040	-				-0.1
2,664,040	-				-1.0
2,664,087	+				-2.0
2,664,233	+				-0.4
2,664,347	+				-0.5
2,664,515	+				-0.2
2,664,562	-				-0.2
2,664,610	+				-4.0
2,665,083	+				+0.2
2,665,104	+				+0.6
2,665,104	+				+0.7
2,665,218	-				-1.8
2,665,263	-				+0.6
2,665,393	+		HSERO_RS11735	0.10	+0.2
2,665,470	+		HSERO_RS11735	0.11	+1.2
2,665,490	-		HSERO_RS11735	0.11	+0.5
2,665,504	-		HSERO_RS11735	0.11	+1.4
2,665,783	+		HSERO_RS11735	0.13	+0.9
2,665,790	-		HSERO_RS11735	0.13	+0.0
2,665,896	+				-1.0
2,665,946	+		HSERO_RS11735	0.14	+0.1
2,665,952	+		HSERO_RS11735	0.14	-0.0
2,666,093	+		HSERO_RS11735	0.15	+2.0
2,666,211	-		HSERO_RS11735	0.16	-0.1
2,666,376	-		HSERO_RS11735	0.17	-0.8
2,666,446	+		HSERO_RS11735	0.17	+1.2
2,666,755	-		HSERO_RS11735	0.19	-1.1
2,666,832	-		HSERO_RS11735	0.20	-1.4
2,666,849	+		HSERO_RS11735	0.20	+0.5
2,666,942	+		HSERO_RS11735	0.21	-1.2
2,666,960	+		HSERO_RS11735	0.21	+0.6
2,666,997	+		HSERO_RS11735	0.21	-0.3
2,666,998	+		HSERO_RS11735	0.21	-2.5
2,667,504	-		HSERO_RS11735	0.24	+0.2
2,667,608	-		HSERO_RS11735	0.25	+0.3
2,667,662	+		HSERO_RS11735	0.25	+0.0
2,667,820	-		HSERO_RS11735	0.26	+1.6
2,667,944	+		HSERO_RS11735	0.27	-0.2
2,668,090	+		HSERO_RS11735	0.28	+0.8
2,668,100	+		HSERO_RS11735	0.28	-0.3
2,668,128	+		HSERO_RS11735	0.28	-1.0
2,668,149	+		HSERO_RS11735	0.29	+0.2
2,668,257	+		HSERO_RS11735	0.29	-0.4
2,668,321	+		HSERO_RS11735	0.30	+0.6
2,668,534	+		HSERO_RS11735	0.31	-1.1
2,668,543	-		HSERO_RS11735	0.31	+0.6
2,668,951	-		HSERO_RS11735	0.34	+0.6
2,668,951	-		HSERO_RS11735	0.34	+0.1
2,669,000	-		HSERO_RS11735	0.34	+0.3
2,669,122	+		HSERO_RS11735	0.35	+0.0
2,669,397	+		HSERO_RS11735	0.37	-1.1
2,669,753	+		HSERO_RS11735	0.39	-0.4
2,669,920	+		HSERO_RS11735	0.41	-1.4
2,670,059	+		HSERO_RS11735	0.41	+0.6
2,670,322	+		HSERO_RS11735	0.43	+0.8
2,670,437	+		HSERO_RS11735	0.44	-0.8
2,670,445	-		HSERO_RS11735	0.44	-0.9
2,670,457	+		HSERO_RS11735	0.44	+0.5
2,670,475	+		HSERO_RS11735	0.44	-0.6
2,670,550	-		HSERO_RS11735	0.45	+0.2
2,670,608	+		HSERO_RS11735	0.45	+0.1
2,670,679	-		HSERO_RS11735	0.46	-0.1
2,671,235	+		HSERO_RS11735	0.49	+2.2
2,671,243	-		HSERO_RS11735	0.49	-1.5
2,671,604	-		HSERO_RS11735	0.52	+1.0
2,671,765	-				-0.4
2,671,867	-		HSERO_RS11735	0.54	-0.9
2,672,002	+		HSERO_RS11735	0.54	+1.0
2,672,015	-		HSERO_RS11735	0.55	+0.3
2,672,263	-		HSERO_RS11735	0.56	-0.0
2,672,287	-		HSERO_RS11735	0.56	+1.8
2,672,332	+		HSERO_RS11735	0.57	-0.2
2,672,346	-		HSERO_RS11735	0.57	+0.0
2,672,632	+		HSERO_RS11735	0.59	+0.0
2,672,640	-		HSERO_RS11735	0.59	-0.4
2,672,663	-		HSERO_RS11735	0.59	+1.7
2,672,681	-				+2.9
2,672,985	+		HSERO_RS11735	0.61	+0.2
2,673,024	-		HSERO_RS11735	0.61	-0.1
2,673,314	+		HSERO_RS11735	0.63	+0.1
2,673,322	-		HSERO_RS11735	0.63	+0.5
2,673,322	-		HSERO_RS11735	0.63	+1.1
2,673,382	-		HSERO_RS11735	0.64	+0.8
2,673,418	-		HSERO_RS11735	0.64	-0.1
2,673,418	-		HSERO_RS11735	0.64	-1.7
2,673,441	+		HSERO_RS11735	0.64	+0.1
2,673,493	+		HSERO_RS11735	0.65	+0.6
2,673,709	+		HSERO_RS11735	0.66	+0.2
2,673,717	-		HSERO_RS11735	0.66	-0.5
2,673,803	-		HSERO_RS11735	0.67	+0.2
2,673,850	-		HSERO_RS11735	0.67	+0.3
2,673,891	+		HSERO_RS11735	0.67	-0.4
2,673,920	-		HSERO_RS11735	0.67	+0.6
2,673,933	-		HSERO_RS11735	0.67	-0.8
2,674,123	+		HSERO_RS11735	0.69	-0.1
2,674,144	+		HSERO_RS11735	0.69	+0.7
2,674,154	+		HSERO_RS11735	0.69	+0.5
2,674,225	+		HSERO_RS11735	0.69	-3.9
2,674,417	+		HSERO_RS11735	0.71	-0.4
2,674,740	-		HSERO_RS11735	0.73	+0.6
2,674,814	+		HSERO_RS11735	0.73	+2.5
2,674,912	-		HSERO_RS11735	0.74	-0.1
2,675,108	-		HSERO_RS11735	0.75	-0.2
2,675,193	+		HSERO_RS11735	0.76	-0.4
2,675,360	+		HSERO_RS11735	0.77	+0.0
2,675,365	+		HSERO_RS11735	0.77	+0.4
2,675,431	-		HSERO_RS11735	0.78	+0.1
2,675,607	+				+0.6
2,675,947	-		HSERO_RS11735	0.81	+0.6
2,675,996	+		HSERO_RS11735	0.81	+0.6
2,676,004	-		HSERO_RS11735	0.81	+1.0
2,676,214	-		HSERO_RS11735	0.83	+1.2
2,676,263	+		HSERO_RS11735	0.83	-0.1
2,676,289	-		HSERO_RS11735	0.83	+0.3
2,676,296	+		HSERO_RS11735	0.83	-0.2
2,676,338	+		HSERO_RS11735	0.84	+0.3
2,676,403	-		HSERO_RS11735	0.84	+3.4
2,676,495	+		HSERO_RS11735	0.85	-1.1
2,676,622	-		HSERO_RS11735	0.86	+1.0
2,676,769	-		HSERO_RS11735	0.86	+0.7
2,676,857	+		HSERO_RS11735	0.87	+0.5
2,677,020	-		HSERO_RS11735	0.88	+0.4
2,677,283	+		HSERO_RS11735	0.90	+0.0
2,677,402	-				-3.2
2,677,671	+				+0.1
2,677,692	-				+2.9
2,677,702	-				-2.0
2,678,068	+				+0.2
2,678,138	+				+0.2
2,678,146	-				+1.6
2,678,146	-				-0.3
2,678,236	+				+0.5
2,678,305	-				+0.1
2,678,659	-				-2.0
2,678,757	-				+0.8
2,678,905	+				-2.8
2,678,928	+				-0.3
2,678,953	-				-0.3
2,679,135	-				-1.6
2,679,135	-				+0.4
2,679,209	-		HSERO_RS11740	0.17	-3.6
2,679,282	-		HSERO_RS11740	0.25	-0.1
2,679,289	+		HSERO_RS11740	0.26	-1.2
2,679,295	+		HSERO_RS11740	0.26	-1.1
2,679,419	+		HSERO_RS11740	0.39	-1.0