Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03545 and HSERO_RS03550 are separated by 201 nucleotides HSERO_RS03550 and HSERO_RS03555 are separated by 104 nucleotides HSERO_RS03555 and HSERO_RS03560 are separated by 221 nucleotides
HSERO_RS03545: HSERO_RS03545 - hypothetical protein, at 772,332 to 772,709
_RS03545
HSERO_RS03550: HSERO_RS03550 - glyoxalase I, at 772,911 to 773,315
_RS03550
HSERO_RS03555: HSERO_RS03555 - chloride channel protein, at 773,420 to 774,703
_RS03555
HSERO_RS03560: HSERO_RS03560 - TonB-denpendent receptor, at 774,925 to 777,054
_RS03560
Position (kb) 773
774
775 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 772.557 kb on + strand, within HSERO_RS03545 at 772.656 kb on - strand, within HSERO_RS03545 at 772.746 kb on - strand at 772.773 kb on - strand at 772.793 kb on + strand at 772.794 kb on + strand at 772.802 kb on - strand at 772.980 kb on - strand, within HSERO_RS03550 at 772.992 kb on - strand, within HSERO_RS03550 at 773.318 kb on - strand at 773.835 kb on + strand, within HSERO_RS03555 at 773.977 kb on - strand, within HSERO_RS03555 at 774.175 kb on + strand, within HSERO_RS03555 at 774.358 kb on + strand, within HSERO_RS03555 at 774.910 kb on + strand at 774.960 kb on + strand at 775.034 kb on + strand at 775.051 kb on + strand at 775.070 kb on + strand at 775.070 kb on + strand at 775.073 kb on - strand at 775.172 kb on - strand, within HSERO_RS03560 at 775.184 kb on + strand, within HSERO_RS03560 at 775.184 kb on + strand, within HSERO_RS03560 at 775.439 kb on - strand, within HSERO_RS03560 at 775.543 kb on - strand at 775.565 kb on + strand, within HSERO_RS03560 at 775.571 kb on - strand, within HSERO_RS03560 at 775.686 kb on + strand, within HSERO_RS03560
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 772,557 + HSERO_RS03545 0.60 +0.5 772,656 - HSERO_RS03545 0.86 -0.8 772,746 - +0.8 772,773 - -0.3 772,793 + +0.5 772,794 + -0.3 772,802 - -0.1 772,980 - HSERO_RS03550 0.17 -0.1 772,992 - HSERO_RS03550 0.20 -1.1 773,318 - +0.3 773,835 + HSERO_RS03555 0.32 -1.2 773,977 - HSERO_RS03555 0.43 -0.0 774,175 + HSERO_RS03555 0.59 -0.0 774,358 + HSERO_RS03555 0.73 +0.2 774,910 + +0.7 774,960 + -2.1 775,034 + +0.1 775,051 + -1.2 775,070 + +1.0 775,070 + -0.7 775,073 - -1.5 775,172 - HSERO_RS03560 0.12 -3.0 775,184 + HSERO_RS03560 0.12 -0.1 775,184 + HSERO_RS03560 0.12 -0.9 775,439 - HSERO_RS03560 0.24 -0.8 775,543 - +0.4 775,565 + HSERO_RS03560 0.30 +1.1 775,571 - HSERO_RS03560 0.30 -3.7 775,686 + HSERO_RS03560 0.36 -0.2
Or see this region's nucleotide sequence