Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03335 and HSERO_RS03340 overlap by 4 nucleotides HSERO_RS03340 and HSERO_RS03345 are separated by 122 nucleotides HSERO_RS03345 and HSERO_RS03350 are separated by 227 nucleotides
HSERO_RS03335: HSERO_RS03335 - branched-chain amino acid ABC transporter permease, at 731,951 to 732,736
_RS03335
HSERO_RS03340: HSERO_RS03340 - branched-chain amino acid transporter, at 732,733 to 733,056
_RS03340
HSERO_RS03345: HSERO_RS03345 - phosphoglycerate kinase, at 733,179 to 734,369
_RS03345
HSERO_RS03350: HSERO_RS03350 - hypothetical protein, at 734,597 to 736,030
_RS03350
Position (kb) 733
734
735 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 732.208 kb on + strand, within HSERO_RS03335 at 732.299 kb on + strand, within HSERO_RS03335 at 732.324 kb on + strand, within HSERO_RS03335 at 732.349 kb on + strand, within HSERO_RS03335 at 732.554 kb on + strand, within HSERO_RS03335 at 732.580 kb on + strand, within HSERO_RS03335 at 732.580 kb on + strand, within HSERO_RS03335 at 732.593 kb on - strand, within HSERO_RS03335 at 732.593 kb on - strand, within HSERO_RS03335 at 732.636 kb on - strand, within HSERO_RS03335 at 732.683 kb on - strand at 732.776 kb on + strand, within HSERO_RS03340 at 732.789 kb on - strand, within HSERO_RS03340 at 732.863 kb on - strand, within HSERO_RS03340 at 732.893 kb on + strand, within HSERO_RS03340 at 732.911 kb on - strand, within HSERO_RS03340 at 732.934 kb on - strand, within HSERO_RS03340 at 733.036 kb on + strand at 733.124 kb on + strand at 733.124 kb on + strand at 733.124 kb on + strand at 733.132 kb on - strand at 734.553 kb on + strand at 734.851 kb on + strand, within HSERO_RS03350 at 734.984 kb on + strand, within HSERO_RS03350 at 735.100 kb on + strand, within HSERO_RS03350 at 735.142 kb on + strand, within HSERO_RS03350 at 735.318 kb on + strand, within HSERO_RS03350
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 732,208 + HSERO_RS03335 0.33 +0.1 732,299 + HSERO_RS03335 0.44 -2.1 732,324 + HSERO_RS03335 0.47 -1.9 732,349 + HSERO_RS03335 0.51 +0.1 732,554 + HSERO_RS03335 0.77 -0.6 732,580 + HSERO_RS03335 0.80 -1.9 732,580 + HSERO_RS03335 0.80 -0.4 732,593 - HSERO_RS03335 0.82 -0.7 732,593 - HSERO_RS03335 0.82 -0.3 732,636 - HSERO_RS03335 0.87 +1.4 732,683 - +2.3 732,776 + HSERO_RS03340 0.13 -1.0 732,789 - HSERO_RS03340 0.17 -0.6 732,863 - HSERO_RS03340 0.40 -0.3 732,893 + HSERO_RS03340 0.49 -0.7 732,911 - HSERO_RS03340 0.55 -0.5 732,934 - HSERO_RS03340 0.62 +0.4 733,036 + +0.1 733,124 + +0.4 733,124 + +1.2 733,124 + +2.1 733,132 - +2.3 734,553 + +1.3 734,851 + HSERO_RS03350 0.18 -1.9 734,984 + HSERO_RS03350 0.27 -2.8 735,100 + HSERO_RS03350 0.35 -1.7 735,142 + HSERO_RS03350 0.38 +0.5 735,318 + HSERO_RS03350 0.50 -2.5
Or see this region's nucleotide sequence