Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS02345

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS02340 and HSERO_RS02345 are separated by 114 nucleotidesHSERO_RS02345 and HSERO_RS02350 overlap by 71 nucleotidesHSERO_RS02350 and HSERO_RS02355 are separated by 226 nucleotides HSERO_RS02340: HSERO_RS02340 - dihydroorotase, at 510,166 to 511,452 _RS02340 HSERO_RS02345: HSERO_RS02345 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 511,567 to 512,367 _RS02345 HSERO_RS02350: HSERO_RS02350 - diadenosine tetraphosphatase, at 512,297 to 513,121 _RS02350 HSERO_RS02355: HSERO_RS02355 - phosphoglucomutase, at 513,348 to 514,724 _RS02355 Position (kb) 511 512 513Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 510.567 kb on + strand, within HSERO_RS02340at 510.576 kb on - strand, within HSERO_RS02340at 510.576 kb on - strand, within HSERO_RS02340at 510.645 kb on - strand, within HSERO_RS02340at 510.726 kb on - strand, within HSERO_RS02340at 510.800 kb on + strand, within HSERO_RS02340at 510.808 kb on - strand, within HSERO_RS02340at 510.900 kb on + strand, within HSERO_RS02340at 510.905 kb on + strand, within HSERO_RS02340at 510.908 kb on + strand, within HSERO_RS02340at 510.955 kb on - strand, within HSERO_RS02340at 511.076 kb on + strand, within HSERO_RS02340at 511.081 kb on + strand, within HSERO_RS02340at 511.084 kb on - strand, within HSERO_RS02340at 511.129 kb on + strand, within HSERO_RS02340at 511.216 kb on - strand, within HSERO_RS02340at 511.218 kb on + strand, within HSERO_RS02340at 511.229 kb on + strand, within HSERO_RS02340at 511.272 kb on - strand, within HSERO_RS02340at 511.347 kb on - strandat 511.605 kb on + strandat 511.646 kb on + strandat 511.740 kb on - strand, within HSERO_RS02345at 511.925 kb on - strand, within HSERO_RS02345at 511.996 kb on + strand, within HSERO_RS02345at 512.062 kb on + strand, within HSERO_RS02345at 512.070 kb on - strand, within HSERO_RS02345at 512.070 kb on - strand, within HSERO_RS02345at 512.075 kb on - strand, within HSERO_RS02345at 512.077 kb on - strand, within HSERO_RS02345at 512.173 kb on + strand, within HSERO_RS02345at 512.208 kb on + strand, within HSERO_RS02345at 512.216 kb on - strand, within HSERO_RS02345at 512.361 kb on + strandat 512.369 kb on - strandat 512.445 kb on + strand, within HSERO_RS02350at 512.485 kb on + strand, within HSERO_RS02350at 512.506 kb on - strand, within HSERO_RS02350at 512.585 kb on + strand, within HSERO_RS02350at 512.842 kb on - strand, within HSERO_RS02350at 512.914 kb on + strand, within HSERO_RS02350at 512.914 kb on + strand, within HSERO_RS02350at 512.922 kb on - strand, within HSERO_RS02350at 513.070 kb on + strandat 513.189 kb on + strandat 513.364 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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510,567 + HSERO_RS02340 0.31 -1.8
510,576 - HSERO_RS02340 0.32 -2.2
510,576 - HSERO_RS02340 0.32 -3.1
510,645 - HSERO_RS02340 0.37 -4.4
510,726 - HSERO_RS02340 0.44 -0.6
510,800 + HSERO_RS02340 0.49 -4.3
510,808 - HSERO_RS02340 0.50 -3.5
510,900 + HSERO_RS02340 0.57 -3.1
510,905 + HSERO_RS02340 0.57 -1.7
510,908 + HSERO_RS02340 0.58 -1.6
510,955 - HSERO_RS02340 0.61 -1.7
511,076 + HSERO_RS02340 0.71 -2.7
511,081 + HSERO_RS02340 0.71 -1.2
511,084 - HSERO_RS02340 0.71 -3.7
511,129 + HSERO_RS02340 0.75 -2.2
511,216 - HSERO_RS02340 0.82 -2.0
511,218 + HSERO_RS02340 0.82 -1.7
511,229 + HSERO_RS02340 0.83 -1.3
511,272 - HSERO_RS02340 0.86 -1.7
511,347 - -1.9
511,605 + +0.6
511,646 + +1.3
511,740 - HSERO_RS02345 0.22 +0.3
511,925 - HSERO_RS02345 0.45 +0.5
511,996 + HSERO_RS02345 0.54 -0.1
512,062 + HSERO_RS02345 0.62 +0.9
512,070 - HSERO_RS02345 0.63 +0.3
512,070 - HSERO_RS02345 0.63 +0.2
512,075 - HSERO_RS02345 0.63 +1.1
512,077 - HSERO_RS02345 0.64 +1.5
512,173 + HSERO_RS02345 0.76 -1.2
512,208 + HSERO_RS02345 0.80 -0.1
512,216 - HSERO_RS02345 0.81 +1.1
512,361 + +0.6
512,369 - -1.0
512,445 + HSERO_RS02350 0.18 -0.1
512,485 + HSERO_RS02350 0.23 +0.7
512,506 - HSERO_RS02350 0.25 +0.5
512,585 + HSERO_RS02350 0.35 -1.5
512,842 - HSERO_RS02350 0.66 +0.2
512,914 + HSERO_RS02350 0.75 -0.3
512,914 + HSERO_RS02350 0.75 -3.0
512,922 - HSERO_RS02350 0.76 +0.4
513,070 + +0.6
513,189 + +0.1
513,364 - -0.0

Or see this region's nucleotide sequence