Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01955 and HSERO_RS01960 are separated by 7 nucleotides HSERO_RS01960 and HSERO_RS01965 are separated by 75 nucleotides
HSERO_RS01955: HSERO_RS01955 - methyl-accepting chemotaxis protein, at 428,446 to 430,149
_RS01955
HSERO_RS01960: HSERO_RS01960 - hypothetical protein, at 430,157 to 430,480
_RS01960
HSERO_RS01965: HSERO_RS01965 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 430,556 to 431,938
_RS01965
Position (kb) 430
431 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 429.311 kb on + strand, within HSERO_RS01955 at 429.328 kb on + strand, within HSERO_RS01955 at 429.338 kb on - strand, within HSERO_RS01955 at 429.528 kb on + strand, within HSERO_RS01955 at 429.531 kb on + strand, within HSERO_RS01955 at 429.697 kb on + strand, within HSERO_RS01955 at 429.750 kb on - strand, within HSERO_RS01955 at 429.777 kb on + strand, within HSERO_RS01955 at 429.866 kb on + strand at 430.072 kb on - strand at 430.072 kb on - strand at 430.082 kb on - strand at 430.107 kb on + strand at 430.258 kb on - strand, within HSERO_RS01960 at 430.274 kb on + strand, within HSERO_RS01960 at 430.462 kb on + strand at 430.462 kb on + strand at 430.466 kb on - strand at 430.607 kb on - strand at 430.626 kb on + strand at 430.671 kb on - strand at 430.697 kb on + strand, within HSERO_RS01965 at 430.867 kb on + strand, within HSERO_RS01965 at 430.952 kb on + strand at 431.061 kb on + strand, within HSERO_RS01965 at 431.143 kb on + strand, within HSERO_RS01965 at 431.254 kb on - strand, within HSERO_RS01965 at 431.300 kb on - strand, within HSERO_RS01965 at 431.466 kb on + strand, within HSERO_RS01965
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 429,311 + HSERO_RS01955 0.51 +0.4 429,328 + HSERO_RS01955 0.52 -1.0 429,338 - HSERO_RS01955 0.52 -0.2 429,528 + HSERO_RS01955 0.63 +0.3 429,531 + HSERO_RS01955 0.64 -0.5 429,697 + HSERO_RS01955 0.73 +0.3 429,750 - HSERO_RS01955 0.77 -0.2 429,777 + HSERO_RS01955 0.78 +0.8 429,866 + +1.2 430,072 - -1.3 430,072 - -0.7 430,082 - -1.1 430,107 + -0.9 430,258 - HSERO_RS01960 0.31 -1.9 430,274 + HSERO_RS01960 0.36 -0.5 430,462 + +1.2 430,462 + +0.3 430,466 - -1.1 430,607 - -0.3 430,626 + -1.6 430,671 - +0.9 430,697 + HSERO_RS01965 0.10 +0.3 430,867 + HSERO_RS01965 0.22 +1.2 430,952 + +2.8 431,061 + HSERO_RS01965 0.37 +0.5 431,143 + HSERO_RS01965 0.42 +0.4 431,254 - HSERO_RS01965 0.50 +0.1 431,300 - HSERO_RS01965 0.54 -0.7 431,466 + HSERO_RS01965 0.66 +0.2
Or see this region's nucleotide sequence