Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS21680

Experiment: (+)-Arabinogalactan 5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS21675 and HMPREF1058_RS21680 are separated by 65 nucleotidesHMPREF1058_RS21680 and HMPREF1058_RS03035 are separated by 205 nucleotidesHMPREF1058_RS03035 and HMPREF1058_RS03030 are separated by 11 nucleotides HMPREF1058_RS21675: HMPREF1058_RS21675 - hypothetical protein, at 24,988 to 26,148 _RS21675 HMPREF1058_RS21680: HMPREF1058_RS21680 - ATP-binding cassette domain-containing protein, at 26,214 to 27,101 _RS21680 HMPREF1058_RS03035: HMPREF1058_RS03035 - hypothetical protein, at 27,307 to 27,783 _RS03035 HMPREF1058_RS03030: HMPREF1058_RS03030 - hypothetical protein, at 27,795 to 29,303 _RS03030 Position (kb) 26 27 28Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 25.218 kb on - strand, within HMPREF1058_RS21675at 25.254 kb on - strand, within HMPREF1058_RS21675at 25.276 kb on + strand, within HMPREF1058_RS21675at 25.276 kb on + strand, within HMPREF1058_RS21675at 25.277 kb on - strand, within HMPREF1058_RS21675at 25.277 kb on - strand, within HMPREF1058_RS21675at 25.277 kb on - strand, within HMPREF1058_RS21675at 25.277 kb on - strand, within HMPREF1058_RS21675at 25.277 kb on - strand, within HMPREF1058_RS21675at 25.345 kb on + strand, within HMPREF1058_RS21675at 25.393 kb on - strand, within HMPREF1058_RS21675at 25.466 kb on + strand, within HMPREF1058_RS21675at 25.500 kb on + strand, within HMPREF1058_RS21675at 25.500 kb on + strand, within HMPREF1058_RS21675at 25.500 kb on + strand, within HMPREF1058_RS21675at 25.500 kb on + strand, within HMPREF1058_RS21675at 25.500 kb on + strand, within HMPREF1058_RS21675at 25.500 kb on + strand, within HMPREF1058_RS21675at 25.501 kb on - strand, within HMPREF1058_RS21675at 25.501 kb on - strand, within HMPREF1058_RS21675at 25.501 kb on - strand, within HMPREF1058_RS21675at 25.501 kb on - strand, within HMPREF1058_RS21675at 25.540 kb on - strand, within HMPREF1058_RS21675at 25.584 kb on + strand, within HMPREF1058_RS21675at 25.669 kb on + strand, within HMPREF1058_RS21675at 25.669 kb on + strand, within HMPREF1058_RS21675at 25.671 kb on + strand, within HMPREF1058_RS21675at 25.672 kb on - strand, within HMPREF1058_RS21675at 25.705 kb on - strand, within HMPREF1058_RS21675at 25.705 kb on - strand, within HMPREF1058_RS21675at 25.724 kb on - strand, within HMPREF1058_RS21675at 25.724 kb on - strand, within HMPREF1058_RS21675at 25.801 kb on - strand, within HMPREF1058_RS21675at 25.860 kb on - strand, within HMPREF1058_RS21675at 25.894 kb on + strand, within HMPREF1058_RS21675at 25.908 kb on - strand, within HMPREF1058_RS21675at 25.958 kb on + strand, within HMPREF1058_RS21675at 25.960 kb on + strand, within HMPREF1058_RS21675at 25.961 kb on - strand, within HMPREF1058_RS21675at 25.961 kb on - strand, within HMPREF1058_RS21675at 25.962 kb on + strand, within HMPREF1058_RS21675at 25.962 kb on + strand, within HMPREF1058_RS21675at 25.962 kb on + strand, within HMPREF1058_RS21675at 25.989 kb on + strand, within HMPREF1058_RS21675at 26.006 kb on - strand, within HMPREF1058_RS21675at 26.035 kb on - strandat 26.048 kb on + strandat 26.053 kb on - strandat 26.105 kb on + strandat 26.106 kb on - strandat 26.106 kb on - strandat 26.108 kb on - strandat 26.108 kb on - strandat 26.138 kb on + strandat 26.139 kb on - strandat 26.143 kb on + strandat 26.143 kb on + strandat 26.144 kb on - strandat 26.396 kb on + strand, within HMPREF1058_RS21680at 26.432 kb on - strand, within HMPREF1058_RS21680at 26.533 kb on - strand, within HMPREF1058_RS21680at 26.688 kb on - strand, within HMPREF1058_RS21680at 26.701 kb on - strand, within HMPREF1058_RS21680at 26.702 kb on + strand, within HMPREF1058_RS21680at 26.703 kb on - strand, within HMPREF1058_RS21680at 26.705 kb on + strand, within HMPREF1058_RS21680at 26.707 kb on + strand, within HMPREF1058_RS21680at 26.739 kb on + strand, within HMPREF1058_RS21680at 26.739 kb on + strand, within HMPREF1058_RS21680at 26.740 kb on - strand, within HMPREF1058_RS21680at 26.740 kb on - strand, within HMPREF1058_RS21680at 26.768 kb on + strand, within HMPREF1058_RS21680at 26.769 kb on - strand, within HMPREF1058_RS21680at 26.861 kb on + strand, within HMPREF1058_RS21680at 26.861 kb on + strand, within HMPREF1058_RS21680at 26.923 kb on + strand, within HMPREF1058_RS21680at 26.981 kb on - strand, within HMPREF1058_RS21680at 27.068 kb on + strandat 27.069 kb on - strandat 27.069 kb on - strandat 27.072 kb on + strandat 27.072 kb on + strandat 27.073 kb on - strandat 27.073 kb on - strandat 27.114 kb on - strandat 27.161 kb on + strandat 27.162 kb on - strandat 27.265 kb on + strandat 27.441 kb on + strand, within HMPREF1058_RS03035at 27.442 kb on - strand, within HMPREF1058_RS03035at 27.447 kb on + strand, within HMPREF1058_RS03035at 27.447 kb on + strand, within HMPREF1058_RS03035at 27.527 kb on + strand, within HMPREF1058_RS03035at 27.527 kb on + strand, within HMPREF1058_RS03035at 27.570 kb on - strand, within HMPREF1058_RS03035at 27.593 kb on - strand, within HMPREF1058_RS03035at 27.610 kb on + strand, within HMPREF1058_RS03035at 27.610 kb on + strand, within HMPREF1058_RS03035at 27.771 kb on + strandat 27.808 kb on + strandat 27.924 kb on + strandat 27.925 kb on - strandat 27.925 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction (+)-Arabinogalactan 5 mg/ml (C)
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25,218 - HMPREF1058_RS21675 0.20 -1.1
25,254 - HMPREF1058_RS21675 0.23 -1.4
25,276 + HMPREF1058_RS21675 0.25 +0.8
25,276 + HMPREF1058_RS21675 0.25 +0.2
25,277 - HMPREF1058_RS21675 0.25 +1.8
25,277 - HMPREF1058_RS21675 0.25 -0.9
25,277 - HMPREF1058_RS21675 0.25 -0.6
25,277 - HMPREF1058_RS21675 0.25 -0.6
25,277 - HMPREF1058_RS21675 0.25 +1.2
25,345 + HMPREF1058_RS21675 0.31 -1.6
25,393 - HMPREF1058_RS21675 0.35 -0.3
25,466 + HMPREF1058_RS21675 0.41 -0.5
25,500 + HMPREF1058_RS21675 0.44 -0.2
25,500 + HMPREF1058_RS21675 0.44 -1.8
25,500 + HMPREF1058_RS21675 0.44 +1.9
25,500 + HMPREF1058_RS21675 0.44 -1.1
25,500 + HMPREF1058_RS21675 0.44 -1.1
25,500 + HMPREF1058_RS21675 0.44 -0.9
25,501 - HMPREF1058_RS21675 0.44 +0.1
25,501 - HMPREF1058_RS21675 0.44 -2.1
25,501 - HMPREF1058_RS21675 0.44 +0.2
25,501 - HMPREF1058_RS21675 0.44 -0.5
25,540 - HMPREF1058_RS21675 0.48 +1.3
25,584 + HMPREF1058_RS21675 0.51 +0.1
25,669 + HMPREF1058_RS21675 0.59 +0.6
25,669 + HMPREF1058_RS21675 0.59 -0.9
25,671 + HMPREF1058_RS21675 0.59 +0.5
25,672 - HMPREF1058_RS21675 0.59 -1.2
25,705 - HMPREF1058_RS21675 0.62 +0.8
25,705 - HMPREF1058_RS21675 0.62 +0.0
25,724 - HMPREF1058_RS21675 0.63 +0.5
25,724 - HMPREF1058_RS21675 0.63 +0.5
25,801 - HMPREF1058_RS21675 0.70 -0.3
25,860 - HMPREF1058_RS21675 0.75 -1.2
25,894 + HMPREF1058_RS21675 0.78 -0.9
25,908 - HMPREF1058_RS21675 0.79 -0.8
25,958 + HMPREF1058_RS21675 0.84 -1.4
25,960 + HMPREF1058_RS21675 0.84 -0.7
25,961 - HMPREF1058_RS21675 0.84 -1.5
25,961 - HMPREF1058_RS21675 0.84 -0.8
25,962 + HMPREF1058_RS21675 0.84 -1.2
25,962 + HMPREF1058_RS21675 0.84 -1.3
25,962 + HMPREF1058_RS21675 0.84 -0.3
25,989 + HMPREF1058_RS21675 0.86 -1.2
26,006 - HMPREF1058_RS21675 0.88 -0.2
26,035 - -0.1
26,048 + +0.4
26,053 - -0.2
26,105 + -0.7
26,106 - +0.4
26,106 - +0.4
26,108 - -2.4
26,108 - +0.4
26,138 + -0.6
26,139 - -0.0
26,143 + +0.2
26,143 + +0.1
26,144 - -0.5
26,396 + HMPREF1058_RS21680 0.20 -1.9
26,432 - HMPREF1058_RS21680 0.25 -0.8
26,533 - HMPREF1058_RS21680 0.36 -0.0
26,688 - HMPREF1058_RS21680 0.53 -0.1
26,701 - HMPREF1058_RS21680 0.55 -0.4
26,702 + HMPREF1058_RS21680 0.55 -1.0
26,703 - HMPREF1058_RS21680 0.55 -1.7
26,705 + HMPREF1058_RS21680 0.55 -2.0
26,707 + HMPREF1058_RS21680 0.56 +1.8
26,739 + HMPREF1058_RS21680 0.59 +0.6
26,739 + HMPREF1058_RS21680 0.59 -1.9
26,740 - HMPREF1058_RS21680 0.59 -0.4
26,740 - HMPREF1058_RS21680 0.59 +0.4
26,768 + HMPREF1058_RS21680 0.62 -0.6
26,769 - HMPREF1058_RS21680 0.62 +5.0
26,861 + HMPREF1058_RS21680 0.73 +5.1
26,861 + HMPREF1058_RS21680 0.73 -0.6
26,923 + HMPREF1058_RS21680 0.80 -1.0
26,981 - HMPREF1058_RS21680 0.86 +0.4
27,068 + -1.3
27,069 - +0.2
27,069 - -1.0
27,072 + -3.1
27,072 + -2.4
27,073 - +0.5
27,073 - +0.8
27,114 - -0.7
27,161 + +1.2
27,162 - -0.7
27,265 + +1.0
27,441 + HMPREF1058_RS03035 0.28 +1.5
27,442 - HMPREF1058_RS03035 0.28 +0.1
27,447 + HMPREF1058_RS03035 0.29 +1.9
27,447 + HMPREF1058_RS03035 0.29 +0.6
27,527 + HMPREF1058_RS03035 0.46 +4.9
27,527 + HMPREF1058_RS03035 0.46 -0.1
27,570 - HMPREF1058_RS03035 0.55 -0.5
27,593 - HMPREF1058_RS03035 0.60 -0.8
27,610 + HMPREF1058_RS03035 0.64 +1.1
27,610 + HMPREF1058_RS03035 0.64 -0.8
27,771 + -0.6
27,808 + -0.5
27,924 + -0.3
27,925 - -0.0
27,925 - +0.1

Or see this region's nucleotide sequence