Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS19010

Experiment: (+)-Arabinogalactan 5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	(+)-Arabinogalactan 5 mg/ml (C)
32,217	+				-1.6
32,225	+				+0.4
32,225	+				-0.3
32,225	+				+1.0
32,262	-				-0.6
32,262	-				+2.0
32,282	-		HMPREF1058_RS19020	0.10	-1.0
32,282	-		HMPREF1058_RS19020	0.10	-2.0
32,346	+		HMPREF1058_RS19020	0.41	-0.2
32,358	+		HMPREF1058_RS19020	0.47	-1.4
32,360	+		HMPREF1058_RS19020	0.48	+1.0
32,361	-		HMPREF1058_RS19020	0.48	+1.3
32,363	-		HMPREF1058_RS19020	0.49	-1.4
32,431	+		HMPREF1058_RS19020	0.81	+0.5
32,469	+				+0.4
32,511	-				+0.5
32,516	-				+0.0
32,516	-				-1.0
32,539	-		HMPREF1058_RS19015	0.12	+1.3
32,583	+		HMPREF1058_RS19015	0.29	-0.9
32,584	-		HMPREF1058_RS19015	0.29	-1.7
32,618	+		HMPREF1058_RS19015	0.43	-2.0
32,629	-		HMPREF1058_RS19015	0.47	-0.5
32,633	-		HMPREF1058_RS19015	0.49	-0.7
32,633	-		HMPREF1058_RS19015	0.49	-0.2
32,656	-		HMPREF1058_RS19015	0.58	-1.0
32,746	-				-2.0
32,746	-				+0.1
32,746	-				-2.8
32,747	+				+0.2
32,747	+				-1.5
32,747	+				+1.1
32,748	-				+0.3
32,748	-				-1.4
32,748	-				-0.1
32,750	-				-0.7
32,850	-				-0.9
32,858	+				-0.2
32,866	+				+1.3
32,873	+				-0.9
32,931	+				-0.6
33,070	+				-0.9
33,070	+				+0.4
33,071	-				+3.9
33,141	-				+0.5
33,148	+				+4.4
33,198	-				-0.4
33,198	-				-0.3
33,296	-		HMPREF1058_RS19010	0.18	-1.7
33,544	-		HMPREF1058_RS19010	0.49	+0.4
33,544	-		HMPREF1058_RS19010	0.49	-1.2
33,621	-		HMPREF1058_RS19010	0.59	+2.1
33,686	-		HMPREF1058_RS19010	0.68	-2.9
33,686	-		HMPREF1058_RS19010	0.68	-1.7
33,688	-		HMPREF1058_RS19010	0.68	-0.6
33,688	-		HMPREF1058_RS19010	0.68	+0.8
33,688	-		HMPREF1058_RS19010	0.68	-1.4
33,692	+		HMPREF1058_RS19010	0.68	-1.5
33,758	+		HMPREF1058_RS19010	0.77	-1.3
33,759	-		HMPREF1058_RS19010	0.77	+0.2
33,770	-		HMPREF1058_RS19010	0.78	+0.7
33,791	+		HMPREF1058_RS19010	0.81	-1.6
33,869	-				+1.3
33,869	-				+0.3
33,932	+				+0.8
33,935	-				-1.4
33,988	+				+0.3
34,028	-				-1.0
34,030	-				+4.1
34,055	+				-1.7
34,055	+				-1.1
34,056	-				+0.5
34,056	-				-1.7
34,056	-				+0.7
34,056	-				-0.8
34,069	+				-1.4
34,467	-				-0.3
34,512	-		HMPREF1058_RS19000	0.24	-0.3
34,598	-		HMPREF1058_RS19000	0.51	-1.0
34,642	-		HMPREF1058_RS19000	0.64	-0.1
34,653	-		HMPREF1058_RS19000	0.68	+0.3
34,653	-		HMPREF1058_RS19000	0.68	+0.3
34,655	-		HMPREF1058_RS19000	0.69	+0.9
34,655	-		HMPREF1058_RS19000	0.69	-0.5
34,659	-		HMPREF1058_RS19000	0.70	-0.9
34,715	-		HMPREF1058_RS19000	0.87	-0.3
34,789	-				-0.3
34,863	-				+1.3
34,866	+				-0.3
34,872	-				-2.5
34,898	+				-1.0
34,909	+				-1.1