Experiment: (+)-Arabinogalactan 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17380 and HMPREF1058_RS17375 are separated by 198 nucleotides HMPREF1058_RS17375 and HMPREF1058_RS17370 are separated by 277 nucleotides HMPREF1058_RS17370 and HMPREF1058_RS17365 are separated by 67 nucleotides
HMPREF1058_RS17380: HMPREF1058_RS17380 - DUF3987 domain-containing protein, at 456,609 to 458,987
_RS17380
HMPREF1058_RS17375: HMPREF1058_RS17375 - hypothetical protein, at 459,186 to 459,383
_RS17375
HMPREF1058_RS17370: HMPREF1058_RS17370 - UpxY family transcription antiterminator, at 459,661 to 460,161
_RS17370
HMPREF1058_RS17365: HMPREF1058_RS17365 - nucleotidyltransferase domain-containing protein, at 460,229 to 460,519
_RS17365
Position (kb) 459
460 Strain fitness (log2 ratio) -2
-1
0
1
2 at 458.479 kb on + strand, within HMPREF1058_RS17380 at 458.480 kb on - strand, within HMPREF1058_RS17380 at 458.959 kb on + strand at 458.959 kb on + strand at 459.047 kb on + strand at 459.466 kb on - strand at 459.682 kb on + strand at 459.683 kb on - strand at 459.756 kb on - strand, within HMPREF1058_RS17370 at 459.836 kb on + strand, within HMPREF1058_RS17370 at 459.837 kb on - strand, within HMPREF1058_RS17370 at 459.887 kb on - strand, within HMPREF1058_RS17370 at 460.095 kb on - strand, within HMPREF1058_RS17370 at 460.160 kb on - strand at 460.160 kb on - strand at 460.270 kb on - strand, within HMPREF1058_RS17365 at 460.303 kb on - strand, within HMPREF1058_RS17365
Per-strain Table
Position Strand Gene LocusTag Fraction (+)-Arabinogalactan 5 mg/ml (C) remove 458,479 + HMPREF1058_RS17380 0.79 -1.5 458,480 - HMPREF1058_RS17380 0.79 +2.1 458,959 + -2.2 458,959 + +0.9 459,047 + +1.4 459,466 - -1.0 459,682 + -1.1 459,683 - -0.0 459,756 - HMPREF1058_RS17370 0.19 -0.6 459,836 + HMPREF1058_RS17370 0.35 +0.4 459,837 - HMPREF1058_RS17370 0.35 -1.6 459,887 - HMPREF1058_RS17370 0.45 -0.3 460,095 - HMPREF1058_RS17370 0.87 -0.9 460,160 - +0.7 460,160 - -0.4 460,270 - HMPREF1058_RS17365 0.14 -1.2 460,303 - HMPREF1058_RS17365 0.25 +1.2
Or see this region's nucleotide sequence