Experiment: (+)-Arabinogalactan 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16085 and HMPREF1058_RS16080 overlap by 1 nucleotides HMPREF1058_RS16080 and HMPREF1058_RS16075 are separated by 90 nucleotides
HMPREF1058_RS16085: HMPREF1058_RS16085 - hypothetical protein, at 760,976 to 762,733
_RS16085
HMPREF1058_RS16080: HMPREF1058_RS16080 - SIR2 family protein, at 762,733 to 766,209
_RS16080
HMPREF1058_RS16075: HMPREF1058_RS16075 - hypothetical protein, at 766,300 to 767,286
_RS16075
Position (kb) 762
763
764
765
766
767 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 761.815 kb on - strand, within HMPREF1058_RS16085 at 761.825 kb on + strand, within HMPREF1058_RS16085 at 761.857 kb on + strand, within HMPREF1058_RS16085 at 761.899 kb on + strand, within HMPREF1058_RS16085 at 761.900 kb on - strand, within HMPREF1058_RS16085 at 761.906 kb on + strand, within HMPREF1058_RS16085 at 761.912 kb on - strand, within HMPREF1058_RS16085 at 761.943 kb on + strand, within HMPREF1058_RS16085 at 761.960 kb on + strand, within HMPREF1058_RS16085 at 761.992 kb on + strand, within HMPREF1058_RS16085 at 761.992 kb on + strand, within HMPREF1058_RS16085 at 761.993 kb on - strand, within HMPREF1058_RS16085 at 761.993 kb on - strand, within HMPREF1058_RS16085 at 761.993 kb on - strand, within HMPREF1058_RS16085 at 761.998 kb on + strand, within HMPREF1058_RS16085 at 762.049 kb on - strand, within HMPREF1058_RS16085 at 762.147 kb on - strand, within HMPREF1058_RS16085 at 762.147 kb on - strand, within HMPREF1058_RS16085 at 762.205 kb on - strand, within HMPREF1058_RS16085 at 762.230 kb on - strand, within HMPREF1058_RS16085 at 762.247 kb on + strand, within HMPREF1058_RS16085 at 762.271 kb on - strand, within HMPREF1058_RS16085 at 762.293 kb on + strand, within HMPREF1058_RS16085 at 762.408 kb on - strand, within HMPREF1058_RS16085 at 762.453 kb on - strand, within HMPREF1058_RS16085 at 762.526 kb on + strand, within HMPREF1058_RS16085 at 762.526 kb on + strand, within HMPREF1058_RS16085 at 762.560 kb on - strand at 762.596 kb on - strand at 762.625 kb on + strand at 762.627 kb on + strand at 762.628 kb on - strand at 762.651 kb on - strand at 762.687 kb on - strand at 762.787 kb on + strand at 762.787 kb on + strand at 762.888 kb on + strand at 762.982 kb on + strand at 762.983 kb on - strand at 762.998 kb on - strand at 763.022 kb on + strand at 763.022 kb on + strand at 763.023 kb on - strand at 763.023 kb on - strand at 763.027 kb on - strand at 763.049 kb on + strand at 763.060 kb on - strand at 763.063 kb on + strand at 763.063 kb on + strand at 763.064 kb on - strand at 763.064 kb on - strand at 763.064 kb on - strand at 763.117 kb on - strand, within HMPREF1058_RS16080 at 763.155 kb on + strand, within HMPREF1058_RS16080 at 763.155 kb on + strand, within HMPREF1058_RS16080 at 763.197 kb on + strand, within HMPREF1058_RS16080 at 763.197 kb on + strand, within HMPREF1058_RS16080 at 763.198 kb on - strand, within HMPREF1058_RS16080 at 763.203 kb on + strand, within HMPREF1058_RS16080 at 763.204 kb on - strand, within HMPREF1058_RS16080 at 763.237 kb on - strand, within HMPREF1058_RS16080 at 763.246 kb on + strand, within HMPREF1058_RS16080 at 763.343 kb on + strand, within HMPREF1058_RS16080 at 763.370 kb on - strand, within HMPREF1058_RS16080 at 763.438 kb on - strand, within HMPREF1058_RS16080 at 763.618 kb on - strand, within HMPREF1058_RS16080 at 763.652 kb on - strand, within HMPREF1058_RS16080 at 763.666 kb on + strand, within HMPREF1058_RS16080 at 763.688 kb on - strand, within HMPREF1058_RS16080 at 763.688 kb on - strand, within HMPREF1058_RS16080 at 763.702 kb on - strand, within HMPREF1058_RS16080 at 763.798 kb on + strand, within HMPREF1058_RS16080 at 763.859 kb on + strand, within HMPREF1058_RS16080 at 763.860 kb on - strand, within HMPREF1058_RS16080 at 764.011 kb on + strand, within HMPREF1058_RS16080 at 764.011 kb on + strand, within HMPREF1058_RS16080 at 764.029 kb on - strand, within HMPREF1058_RS16080 at 764.077 kb on + strand, within HMPREF1058_RS16080 at 764.199 kb on + strand, within HMPREF1058_RS16080 at 764.199 kb on + strand, within HMPREF1058_RS16080 at 764.200 kb on - strand, within HMPREF1058_RS16080 at 764.254 kb on - strand, within HMPREF1058_RS16080 at 764.273 kb on + strand, within HMPREF1058_RS16080 at 764.278 kb on - strand, within HMPREF1058_RS16080 at 764.278 kb on - strand, within HMPREF1058_RS16080 at 764.350 kb on - strand, within HMPREF1058_RS16080 at 764.406 kb on - strand, within HMPREF1058_RS16080 at 764.456 kb on - strand, within HMPREF1058_RS16080 at 764.579 kb on + strand, within HMPREF1058_RS16080 at 764.583 kb on + strand, within HMPREF1058_RS16080 at 764.583 kb on + strand, within HMPREF1058_RS16080 at 764.586 kb on - strand, within HMPREF1058_RS16080 at 764.723 kb on - strand, within HMPREF1058_RS16080 at 764.846 kb on - strand, within HMPREF1058_RS16080 at 764.846 kb on - strand, within HMPREF1058_RS16080 at 764.846 kb on - strand, within HMPREF1058_RS16080 at 764.850 kb on - strand, within HMPREF1058_RS16080 at 764.873 kb on + strand, within HMPREF1058_RS16080 at 764.922 kb on - strand, within HMPREF1058_RS16080 at 764.922 kb on - strand, within HMPREF1058_RS16080 at 764.990 kb on + strand, within HMPREF1058_RS16080 at 764.994 kb on + strand, within HMPREF1058_RS16080 at 764.994 kb on + strand, within HMPREF1058_RS16080 at 764.994 kb on + strand, within HMPREF1058_RS16080 at 764.995 kb on - strand, within HMPREF1058_RS16080 at 765.046 kb on + strand, within HMPREF1058_RS16080 at 765.046 kb on + strand, within HMPREF1058_RS16080 at 765.047 kb on - strand, within HMPREF1058_RS16080 at 765.047 kb on - strand, within HMPREF1058_RS16080 at 765.051 kb on - strand, within HMPREF1058_RS16080 at 765.125 kb on - strand, within HMPREF1058_RS16080 at 765.126 kb on + strand, within HMPREF1058_RS16080 at 765.149 kb on + strand, within HMPREF1058_RS16080 at 765.150 kb on - strand, within HMPREF1058_RS16080 at 765.150 kb on - strand, within HMPREF1058_RS16080 at 765.150 kb on - strand, within HMPREF1058_RS16080 at 765.151 kb on + strand, within HMPREF1058_RS16080 at 765.152 kb on - strand, within HMPREF1058_RS16080 at 765.152 kb on - strand, within HMPREF1058_RS16080 at 765.152 kb on - strand, within HMPREF1058_RS16080 at 765.170 kb on - strand, within HMPREF1058_RS16080 at 765.171 kb on + strand, within HMPREF1058_RS16080 at 765.218 kb on - strand, within HMPREF1058_RS16080 at 765.281 kb on + strand, within HMPREF1058_RS16080 at 765.282 kb on - strand, within HMPREF1058_RS16080 at 765.307 kb on - strand, within HMPREF1058_RS16080 at 765.358 kb on - strand, within HMPREF1058_RS16080 at 765.359 kb on + strand, within HMPREF1058_RS16080 at 765.359 kb on + strand, within HMPREF1058_RS16080 at 765.360 kb on - strand, within HMPREF1058_RS16080 at 765.360 kb on - strand, within HMPREF1058_RS16080 at 765.460 kb on - strand, within HMPREF1058_RS16080 at 765.480 kb on + strand, within HMPREF1058_RS16080 at 765.481 kb on - strand, within HMPREF1058_RS16080 at 765.482 kb on + strand, within HMPREF1058_RS16080 at 765.599 kb on - strand, within HMPREF1058_RS16080 at 765.676 kb on - strand, within HMPREF1058_RS16080 at 765.685 kb on + strand, within HMPREF1058_RS16080 at 765.685 kb on + strand, within HMPREF1058_RS16080 at 765.685 kb on + strand, within HMPREF1058_RS16080 at 765.735 kb on - strand, within HMPREF1058_RS16080 at 765.735 kb on - strand, within HMPREF1058_RS16080 at 765.740 kb on - strand, within HMPREF1058_RS16080 at 765.784 kb on + strand, within HMPREF1058_RS16080 at 765.877 kb on + strand at 765.878 kb on - strand at 765.916 kb on + strand at 765.972 kb on + strand at 765.973 kb on - strand at 765.979 kb on + strand at 765.980 kb on - strand at 765.980 kb on - strand at 766.010 kb on - strand at 766.053 kb on + strand at 766.054 kb on - strand at 766.100 kb on - strand at 766.103 kb on - strand at 766.126 kb on + strand at 766.127 kb on - strand at 766.127 kb on - strand at 766.127 kb on - strand at 766.134 kb on + strand at 766.134 kb on + strand at 766.134 kb on + strand at 766.134 kb on + strand at 766.138 kb on + strand at 766.138 kb on + strand at 766.179 kb on + strand at 766.180 kb on - strand at 766.184 kb on - strand at 766.197 kb on + strand at 766.197 kb on + strand at 766.228 kb on - strand at 766.242 kb on + strand at 766.243 kb on - strand at 766.248 kb on + strand at 766.273 kb on - strand at 766.273 kb on - strand at 766.351 kb on + strand at 766.351 kb on + strand at 766.351 kb on + strand at 766.352 kb on - strand at 766.377 kb on + strand at 766.378 kb on - strand at 766.378 kb on - strand at 766.378 kb on - strand at 766.446 kb on - strand, within HMPREF1058_RS16075 at 766.526 kb on - strand, within HMPREF1058_RS16075 at 766.665 kb on + strand, within HMPREF1058_RS16075 at 766.666 kb on - strand, within HMPREF1058_RS16075 at 766.676 kb on + strand, within HMPREF1058_RS16075 at 766.811 kb on - strand, within HMPREF1058_RS16075 at 766.960 kb on - strand, within HMPREF1058_RS16075 at 767.043 kb on - strand, within HMPREF1058_RS16075 at 767.043 kb on - strand, within HMPREF1058_RS16075 at 767.048 kb on + strand, within HMPREF1058_RS16075 at 767.049 kb on - strand, within HMPREF1058_RS16075 at 767.101 kb on + strand, within HMPREF1058_RS16075 at 767.131 kb on + strand, within HMPREF1058_RS16075 at 767.159 kb on - strand, within HMPREF1058_RS16075 at 767.195 kb on + strand at 767.195 kb on + strand at 767.196 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction (+)-Arabinogalactan 5 mg/ml (C) remove 761,815 - HMPREF1058_RS16085 0.48 -2.6 761,825 + HMPREF1058_RS16085 0.48 +0.7 761,857 + HMPREF1058_RS16085 0.50 -0.0 761,899 + HMPREF1058_RS16085 0.53 -0.2 761,900 - HMPREF1058_RS16085 0.53 +0.7 761,906 + HMPREF1058_RS16085 0.53 -1.6 761,912 - HMPREF1058_RS16085 0.53 -0.6 761,943 + HMPREF1058_RS16085 0.55 +0.9 761,960 + HMPREF1058_RS16085 0.56 +0.9 761,992 + HMPREF1058_RS16085 0.58 +0.7 761,992 + HMPREF1058_RS16085 0.58 +0.4 761,993 - HMPREF1058_RS16085 0.58 -0.3 761,993 - HMPREF1058_RS16085 0.58 +4.8 761,993 - HMPREF1058_RS16085 0.58 +1.4 761,998 + HMPREF1058_RS16085 0.58 +1.5 762,049 - HMPREF1058_RS16085 0.61 +0.3 762,147 - HMPREF1058_RS16085 0.67 +0.7 762,147 - HMPREF1058_RS16085 0.67 -0.3 762,205 - HMPREF1058_RS16085 0.70 -0.9 762,230 - HMPREF1058_RS16085 0.71 -1.2 762,247 + HMPREF1058_RS16085 0.72 -1.2 762,271 - HMPREF1058_RS16085 0.74 +1.0 762,293 + HMPREF1058_RS16085 0.75 +0.6 762,408 - HMPREF1058_RS16085 0.81 +0.4 762,453 - HMPREF1058_RS16085 0.84 +2.9 762,526 + HMPREF1058_RS16085 0.88 +2.5 762,526 + HMPREF1058_RS16085 0.88 -0.7 762,560 - -0.0 762,596 - +0.2 762,625 + -1.5 762,627 + +0.4 762,628 - +0.2 762,651 - -0.2 762,687 - -0.7 762,787 + -0.8 762,787 + +1.5 762,888 + +0.2 762,982 + -1.4 762,983 - -1.1 762,998 - -0.1 763,022 + -2.6 763,022 + -0.0 763,023 - -0.0 763,023 - -0.3 763,027 - -0.1 763,049 + -0.8 763,060 - -0.5 763,063 + -0.4 763,063 + -0.9 763,064 - +0.1 763,064 - -1.4 763,064 - -0.9 763,117 - HMPREF1058_RS16080 0.11 +0.1 763,155 + HMPREF1058_RS16080 0.12 +0.6 763,155 + HMPREF1058_RS16080 0.12 -1.6 763,197 + HMPREF1058_RS16080 0.13 -0.0 763,197 + HMPREF1058_RS16080 0.13 -1.0 763,198 - HMPREF1058_RS16080 0.13 -0.1 763,203 + HMPREF1058_RS16080 0.14 -0.1 763,204 - HMPREF1058_RS16080 0.14 +0.4 763,237 - HMPREF1058_RS16080 0.14 +0.4 763,246 + HMPREF1058_RS16080 0.15 -0.2 763,343 + HMPREF1058_RS16080 0.18 -0.7 763,370 - HMPREF1058_RS16080 0.18 +0.9 763,438 - HMPREF1058_RS16080 0.20 +2.4 763,618 - HMPREF1058_RS16080 0.25 +0.4 763,652 - HMPREF1058_RS16080 0.26 -0.5 763,666 + HMPREF1058_RS16080 0.27 +0.7 763,688 - HMPREF1058_RS16080 0.27 -0.7 763,688 - HMPREF1058_RS16080 0.27 -1.5 763,702 - HMPREF1058_RS16080 0.28 +1.1 763,798 + HMPREF1058_RS16080 0.31 -0.2 763,859 + HMPREF1058_RS16080 0.32 +0.2 763,860 - HMPREF1058_RS16080 0.32 -0.1 764,011 + HMPREF1058_RS16080 0.37 -0.3 764,011 + HMPREF1058_RS16080 0.37 -1.8 764,029 - HMPREF1058_RS16080 0.37 +0.6 764,077 + HMPREF1058_RS16080 0.39 -0.1 764,199 + HMPREF1058_RS16080 0.42 +1.5 764,199 + HMPREF1058_RS16080 0.42 -1.1 764,200 - HMPREF1058_RS16080 0.42 -0.3 764,254 - HMPREF1058_RS16080 0.44 +0.3 764,273 + HMPREF1058_RS16080 0.44 +0.2 764,278 - HMPREF1058_RS16080 0.44 -0.2 764,278 - HMPREF1058_RS16080 0.44 -2.3 764,350 - HMPREF1058_RS16080 0.47 +0.0 764,406 - HMPREF1058_RS16080 0.48 -1.2 764,456 - HMPREF1058_RS16080 0.50 -0.4 764,579 + HMPREF1058_RS16080 0.53 -1.2 764,583 + HMPREF1058_RS16080 0.53 -2.0 764,583 + HMPREF1058_RS16080 0.53 +0.5 764,586 - HMPREF1058_RS16080 0.53 -0.2 764,723 - HMPREF1058_RS16080 0.57 +0.4 764,846 - HMPREF1058_RS16080 0.61 -0.1 764,846 - HMPREF1058_RS16080 0.61 -0.1 764,846 - HMPREF1058_RS16080 0.61 +1.3 764,850 - HMPREF1058_RS16080 0.61 -1.5 764,873 + HMPREF1058_RS16080 0.62 +0.1 764,922 - HMPREF1058_RS16080 0.63 -0.3 764,922 - HMPREF1058_RS16080 0.63 +0.9 764,990 + HMPREF1058_RS16080 0.65 +1.0 764,994 + HMPREF1058_RS16080 0.65 +0.7 764,994 + HMPREF1058_RS16080 0.65 -0.4 764,994 + HMPREF1058_RS16080 0.65 -2.1 764,995 - HMPREF1058_RS16080 0.65 +0.3 765,046 + HMPREF1058_RS16080 0.67 +0.5 765,046 + HMPREF1058_RS16080 0.67 +0.5 765,047 - HMPREF1058_RS16080 0.67 -1.1 765,047 - HMPREF1058_RS16080 0.67 -1.4 765,051 - HMPREF1058_RS16080 0.67 +1.0 765,125 - HMPREF1058_RS16080 0.69 -0.1 765,126 + HMPREF1058_RS16080 0.69 -0.2 765,149 + HMPREF1058_RS16080 0.69 +0.2 765,150 - HMPREF1058_RS16080 0.70 -2.6 765,150 - HMPREF1058_RS16080 0.70 -0.1 765,150 - HMPREF1058_RS16080 0.70 +0.0 765,151 + HMPREF1058_RS16080 0.70 -0.3 765,152 - HMPREF1058_RS16080 0.70 -0.2 765,152 - HMPREF1058_RS16080 0.70 +1.4 765,152 - HMPREF1058_RS16080 0.70 -0.2 765,170 - HMPREF1058_RS16080 0.70 -0.5 765,171 + HMPREF1058_RS16080 0.70 -1.7 765,218 - HMPREF1058_RS16080 0.71 -0.3 765,281 + HMPREF1058_RS16080 0.73 +2.6 765,282 - HMPREF1058_RS16080 0.73 +0.5 765,307 - HMPREF1058_RS16080 0.74 -0.5 765,358 - HMPREF1058_RS16080 0.75 +0.2 765,359 + HMPREF1058_RS16080 0.76 -0.6 765,359 + HMPREF1058_RS16080 0.76 +0.5 765,360 - HMPREF1058_RS16080 0.76 -1.1 765,360 - HMPREF1058_RS16080 0.76 -0.4 765,460 - HMPREF1058_RS16080 0.78 +2.9 765,480 + HMPREF1058_RS16080 0.79 -0.3 765,481 - HMPREF1058_RS16080 0.79 +0.3 765,482 + HMPREF1058_RS16080 0.79 +0.9 765,599 - HMPREF1058_RS16080 0.82 +0.1 765,676 - HMPREF1058_RS16080 0.85 -0.3 765,685 + HMPREF1058_RS16080 0.85 +0.3 765,685 + HMPREF1058_RS16080 0.85 +0.2 765,685 + HMPREF1058_RS16080 0.85 -1.1 765,735 - HMPREF1058_RS16080 0.86 -0.1 765,735 - HMPREF1058_RS16080 0.86 +0.3 765,740 - HMPREF1058_RS16080 0.86 -0.5 765,784 + HMPREF1058_RS16080 0.88 -1.4 765,877 + -0.8 765,878 - -1.5 765,916 + +0.3 765,972 + -0.2 765,973 - -1.0 765,979 + +1.2 765,980 - +1.7 765,980 - -0.0 766,010 - +0.3 766,053 + -0.6 766,054 - +1.4 766,100 - -0.4 766,103 - -0.9 766,126 + +1.4 766,127 - -0.3 766,127 - +1.3 766,127 - +0.7 766,134 + -1.1 766,134 + +4.8 766,134 + -0.4 766,134 + -0.8 766,138 + +0.4 766,138 + -0.5 766,179 + -1.6 766,180 - -0.4 766,184 - +1.0 766,197 + -1.3 766,197 + -0.3 766,228 - -0.7 766,242 + -0.2 766,243 - -0.7 766,248 + -0.0 766,273 - -2.0 766,273 - +0.4 766,351 + -0.2 766,351 + +0.8 766,351 + -0.8 766,352 - +1.0 766,377 + +0.0 766,378 - -2.1 766,378 - -1.0 766,378 - +0.2 766,446 - HMPREF1058_RS16075 0.15 -1.0 766,526 - HMPREF1058_RS16075 0.23 +0.0 766,665 + HMPREF1058_RS16075 0.37 -0.3 766,666 - HMPREF1058_RS16075 0.37 -0.4 766,676 + HMPREF1058_RS16075 0.38 -0.4 766,811 - HMPREF1058_RS16075 0.52 -0.5 766,960 - HMPREF1058_RS16075 0.67 -0.2 767,043 - HMPREF1058_RS16075 0.75 +0.8 767,043 - HMPREF1058_RS16075 0.75 -0.5 767,048 + HMPREF1058_RS16075 0.76 -1.6 767,049 - HMPREF1058_RS16075 0.76 -0.2 767,101 + HMPREF1058_RS16075 0.81 +0.9 767,131 + HMPREF1058_RS16075 0.84 -1.7 767,159 - HMPREF1058_RS16075 0.87 +0.8 767,195 + -0.3 767,195 + +0.1 767,196 - -0.6
Or see this region's nucleotide sequence