Experiment: (+)-Arabinogalactan 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11295 and HMPREF1058_RS11290 are separated by 137 nucleotides HMPREF1058_RS11290 and HMPREF1058_RS11285 are separated by 9 nucleotides HMPREF1058_RS11285 and HMPREF1058_RS11280 overlap by 1 nucleotides
HMPREF1058_RS11295: HMPREF1058_RS11295 - methyltransferase domain-containing protein, at 407,362 to 408,258
_RS11295
HMPREF1058_RS11290: HMPREF1058_RS11290 - PspC domain-containing protein, at 408,396 to 408,632
_RS11290
HMPREF1058_RS11285: HMPREF1058_RS11285 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 408,642 to 409,043
_RS11285
HMPREF1058_RS11280: HMPREF1058_RS11280 - tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB, at 409,043 to 410,413
_RS11280
Position (kb) 408
409
410 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 407.652 kb on - strand, within HMPREF1058_RS11295 at 407.936 kb on - strand, within HMPREF1058_RS11295 at 407.978 kb on - strand, within HMPREF1058_RS11295 at 408.003 kb on + strand, within HMPREF1058_RS11295 at 408.004 kb on - strand, within HMPREF1058_RS11295 at 408.004 kb on - strand, within HMPREF1058_RS11295 at 408.006 kb on - strand, within HMPREF1058_RS11295 at 408.006 kb on - strand, within HMPREF1058_RS11295 at 408.026 kb on - strand, within HMPREF1058_RS11295 at 408.067 kb on - strand, within HMPREF1058_RS11295 at 408.084 kb on - strand, within HMPREF1058_RS11295 at 408.180 kb on - strand at 408.238 kb on - strand at 408.251 kb on - strand at 408.327 kb on - strand at 408.362 kb on + strand at 408.497 kb on + strand, within HMPREF1058_RS11290 at 408.498 kb on - strand, within HMPREF1058_RS11290 at 408.548 kb on + strand, within HMPREF1058_RS11290 at 408.550 kb on + strand, within HMPREF1058_RS11290 at 408.550 kb on + strand, within HMPREF1058_RS11290 at 408.551 kb on - strand, within HMPREF1058_RS11290 at 408.551 kb on - strand, within HMPREF1058_RS11290 at 408.567 kb on - strand, within HMPREF1058_RS11290 at 408.643 kb on + strand at 408.681 kb on - strand at 408.728 kb on + strand, within HMPREF1058_RS11285 at 408.728 kb on + strand, within HMPREF1058_RS11285 at 408.728 kb on + strand, within HMPREF1058_RS11285 at 408.729 kb on - strand, within HMPREF1058_RS11285 at 408.729 kb on - strand, within HMPREF1058_RS11285 at 408.729 kb on - strand, within HMPREF1058_RS11285 at 408.729 kb on - strand, within HMPREF1058_RS11285 at 408.729 kb on - strand, within HMPREF1058_RS11285 at 408.729 kb on - strand, within HMPREF1058_RS11285 at 408.729 kb on - strand, within HMPREF1058_RS11285 at 408.731 kb on - strand, within HMPREF1058_RS11285 at 408.739 kb on + strand, within HMPREF1058_RS11285 at 408.740 kb on - strand, within HMPREF1058_RS11285 at 408.753 kb on - strand, within HMPREF1058_RS11285 at 408.760 kb on - strand, within HMPREF1058_RS11285 at 408.767 kb on + strand, within HMPREF1058_RS11285 at 408.796 kb on + strand, within HMPREF1058_RS11285 at 408.796 kb on - strand, within HMPREF1058_RS11285 at 408.846 kb on - strand, within HMPREF1058_RS11285 at 408.896 kb on + strand, within HMPREF1058_RS11285 at 408.896 kb on + strand, within HMPREF1058_RS11285 at 408.897 kb on - strand, within HMPREF1058_RS11285 at 408.908 kb on + strand, within HMPREF1058_RS11285 at 408.940 kb on - strand, within HMPREF1058_RS11285 at 408.944 kb on + strand, within HMPREF1058_RS11285 at 408.957 kb on - strand, within HMPREF1058_RS11285 at 408.957 kb on - strand, within HMPREF1058_RS11285 at 408.986 kb on + strand, within HMPREF1058_RS11285 at 409.004 kb on - strand at 409.023 kb on - strand at 409.025 kb on - strand at 409.094 kb on + strand at 409.095 kb on - strand at 409.095 kb on - strand at 409.338 kb on + strand, within HMPREF1058_RS11280 at 409.338 kb on + strand, within HMPREF1058_RS11280 at 409.359 kb on + strand, within HMPREF1058_RS11280 at 409.363 kb on + strand, within HMPREF1058_RS11280 at 409.364 kb on - strand, within HMPREF1058_RS11280 at 409.369 kb on + strand, within HMPREF1058_RS11280 at 409.531 kb on - strand, within HMPREF1058_RS11280 at 409.531 kb on - strand, within HMPREF1058_RS11280 at 409.588 kb on + strand, within HMPREF1058_RS11280 at 409.588 kb on + strand, within HMPREF1058_RS11280 at 409.589 kb on - strand, within HMPREF1058_RS11280 at 409.724 kb on - strand, within HMPREF1058_RS11280 at 409.782 kb on - strand, within HMPREF1058_RS11280 at 409.789 kb on + strand, within HMPREF1058_RS11280 at 409.790 kb on - strand, within HMPREF1058_RS11280 at 409.828 kb on + strand, within HMPREF1058_RS11280 at 409.867 kb on - strand, within HMPREF1058_RS11280 at 409.959 kb on - strand, within HMPREF1058_RS11280 at 409.996 kb on + strand, within HMPREF1058_RS11280
Per-strain Table
Position Strand Gene LocusTag Fraction (+)-Arabinogalactan 5 mg/ml (C) remove 407,652 - HMPREF1058_RS11295 0.32 -0.9 407,936 - HMPREF1058_RS11295 0.64 -1.0 407,978 - HMPREF1058_RS11295 0.69 -2.8 408,003 + HMPREF1058_RS11295 0.71 -1.0 408,004 - HMPREF1058_RS11295 0.72 -0.8 408,004 - HMPREF1058_RS11295 0.72 +0.8 408,006 - HMPREF1058_RS11295 0.72 -0.5 408,006 - HMPREF1058_RS11295 0.72 -2.1 408,026 - HMPREF1058_RS11295 0.74 +1.5 408,067 - HMPREF1058_RS11295 0.79 -1.3 408,084 - HMPREF1058_RS11295 0.80 -1.7 408,180 - -0.5 408,238 - -3.4 408,251 - -1.4 408,327 - +0.6 408,362 + +0.2 408,497 + HMPREF1058_RS11290 0.43 -0.2 408,498 - HMPREF1058_RS11290 0.43 -0.5 408,548 + HMPREF1058_RS11290 0.64 +0.1 408,550 + HMPREF1058_RS11290 0.65 -0.1 408,550 + HMPREF1058_RS11290 0.65 +0.4 408,551 - HMPREF1058_RS11290 0.65 -0.1 408,551 - HMPREF1058_RS11290 0.65 -1.8 408,567 - HMPREF1058_RS11290 0.72 -0.8 408,643 + -0.9 408,681 - -0.5 408,728 + HMPREF1058_RS11285 0.21 -1.1 408,728 + HMPREF1058_RS11285 0.21 +0.2 408,728 + HMPREF1058_RS11285 0.21 +0.1 408,729 - HMPREF1058_RS11285 0.22 +1.5 408,729 - HMPREF1058_RS11285 0.22 +0.1 408,729 - HMPREF1058_RS11285 0.22 -0.2 408,729 - HMPREF1058_RS11285 0.22 -0.6 408,729 - HMPREF1058_RS11285 0.22 -2.2 408,729 - HMPREF1058_RS11285 0.22 -2.2 408,729 - HMPREF1058_RS11285 0.22 -1.3 408,731 - HMPREF1058_RS11285 0.22 +0.1 408,739 + HMPREF1058_RS11285 0.24 -0.8 408,740 - HMPREF1058_RS11285 0.24 -0.9 408,753 - HMPREF1058_RS11285 0.28 +0.7 408,760 - HMPREF1058_RS11285 0.29 +0.8 408,767 + HMPREF1058_RS11285 0.31 -0.3 408,796 + HMPREF1058_RS11285 0.38 -2.4 408,796 - HMPREF1058_RS11285 0.38 -0.0 408,846 - HMPREF1058_RS11285 0.51 -0.4 408,896 + HMPREF1058_RS11285 0.63 +0.9 408,896 + HMPREF1058_RS11285 0.63 +1.1 408,897 - HMPREF1058_RS11285 0.63 -1.5 408,908 + HMPREF1058_RS11285 0.66 +0.7 408,940 - HMPREF1058_RS11285 0.74 +0.4 408,944 + HMPREF1058_RS11285 0.75 -2.0 408,957 - HMPREF1058_RS11285 0.78 -0.0 408,957 - HMPREF1058_RS11285 0.78 +0.3 408,986 + HMPREF1058_RS11285 0.86 -0.4 409,004 - -0.6 409,023 - -0.3 409,025 - -0.1 409,094 + -1.4 409,095 - +0.0 409,095 - -0.7 409,338 + HMPREF1058_RS11280 0.22 -0.9 409,338 + HMPREF1058_RS11280 0.22 +0.9 409,359 + HMPREF1058_RS11280 0.23 -0.5 409,363 + HMPREF1058_RS11280 0.23 -0.0 409,364 - HMPREF1058_RS11280 0.23 +0.6 409,369 + HMPREF1058_RS11280 0.24 +0.1 409,531 - HMPREF1058_RS11280 0.36 +0.9 409,531 - HMPREF1058_RS11280 0.36 -1.3 409,588 + HMPREF1058_RS11280 0.40 -0.3 409,588 + HMPREF1058_RS11280 0.40 -0.1 409,589 - HMPREF1058_RS11280 0.40 -1.7 409,724 - HMPREF1058_RS11280 0.50 -0.7 409,782 - HMPREF1058_RS11280 0.54 -0.8 409,789 + HMPREF1058_RS11280 0.54 -2.3 409,790 - HMPREF1058_RS11280 0.54 +0.4 409,828 + HMPREF1058_RS11280 0.57 +0.9 409,867 - HMPREF1058_RS11280 0.60 +0.3 409,959 - HMPREF1058_RS11280 0.67 +0.3 409,996 + HMPREF1058_RS11280 0.70 -1.3
Or see this region's nucleotide sequence