Experiment: (+)-Arabinogalactan 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10630 and HMPREF1058_RS10625 are separated by 113 nucleotides HMPREF1058_RS10625 and HMPREF1058_RS10620 are separated by 3 nucleotides
HMPREF1058_RS10630: HMPREF1058_RS10630 - KilA-N domain-containing protein, at 613,327 to 614,181
_RS10630
HMPREF1058_RS10625: HMPREF1058_RS10625 - beta-ketoacyl synthase chain length factor, at 614,295 to 615,248
_RS10625
HMPREF1058_RS10620: HMPREF1058_RS10620 - beta-ketoacyl-[acyl-carrier-protein] synthase family protein, at 615,252 to 616,442
_RS10620
Position (kb) 614
615
616 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 613.333 kb on + strand at 613.347 kb on + strand at 613.441 kb on - strand, within HMPREF1058_RS10630 at 613.441 kb on - strand, within HMPREF1058_RS10630 at 613.523 kb on - strand, within HMPREF1058_RS10630 at 613.539 kb on + strand, within HMPREF1058_RS10630 at 613.540 kb on - strand, within HMPREF1058_RS10630 at 613.545 kb on + strand, within HMPREF1058_RS10630 at 613.587 kb on + strand, within HMPREF1058_RS10630 at 613.672 kb on - strand, within HMPREF1058_RS10630 at 613.692 kb on + strand, within HMPREF1058_RS10630 at 613.714 kb on - strand, within HMPREF1058_RS10630 at 613.716 kb on + strand, within HMPREF1058_RS10630 at 613.716 kb on + strand, within HMPREF1058_RS10630 at 613.716 kb on + strand, within HMPREF1058_RS10630 at 613.745 kb on - strand, within HMPREF1058_RS10630 at 613.803 kb on + strand, within HMPREF1058_RS10630 at 614.035 kb on - strand, within HMPREF1058_RS10630 at 614.035 kb on - strand, within HMPREF1058_RS10630 at 614.038 kb on - strand, within HMPREF1058_RS10630 at 614.059 kb on + strand, within HMPREF1058_RS10630 at 614.062 kb on - strand, within HMPREF1058_RS10630 at 614.067 kb on - strand, within HMPREF1058_RS10630 at 614.067 kb on - strand, within HMPREF1058_RS10630 at 614.067 kb on - strand, within HMPREF1058_RS10630 at 614.074 kb on - strand, within HMPREF1058_RS10630 at 614.115 kb on + strand at 614.115 kb on + strand at 614.118 kb on - strand at 614.124 kb on + strand at 614.138 kb on - strand at 614.150 kb on - strand at 614.152 kb on - strand at 614.244 kb on + strand at 614.276 kb on - strand at 614.279 kb on - strand at 614.336 kb on + strand at 614.353 kb on + strand at 614.353 kb on + strand at 614.354 kb on - strand at 614.354 kb on - strand at 614.417 kb on - strand, within HMPREF1058_RS10625 at 614.640 kb on - strand, within HMPREF1058_RS10625 at 614.643 kb on + strand, within HMPREF1058_RS10625 at 614.756 kb on + strand, within HMPREF1058_RS10625 at 614.772 kb on + strand, within HMPREF1058_RS10625 at 614.797 kb on - strand, within HMPREF1058_RS10625 at 614.835 kb on + strand, within HMPREF1058_RS10625 at 614.836 kb on - strand, within HMPREF1058_RS10625 at 614.868 kb on + strand, within HMPREF1058_RS10625 at 614.872 kb on + strand, within HMPREF1058_RS10625 at 614.881 kb on + strand, within HMPREF1058_RS10625 at 614.883 kb on - strand, within HMPREF1058_RS10625 at 614.884 kb on + strand, within HMPREF1058_RS10625 at 614.885 kb on - strand, within HMPREF1058_RS10625 at 614.885 kb on - strand, within HMPREF1058_RS10625 at 614.892 kb on + strand, within HMPREF1058_RS10625 at 614.911 kb on - strand, within HMPREF1058_RS10625 at 614.927 kb on + strand, within HMPREF1058_RS10625 at 614.996 kb on + strand, within HMPREF1058_RS10625 at 615.052 kb on - strand, within HMPREF1058_RS10625 at 615.160 kb on + strand at 615.235 kb on + strand at 615.236 kb on - strand at 615.236 kb on - strand at 615.236 kb on - strand at 615.236 kb on - strand at 615.249 kb on - strand at 615.249 kb on - strand at 615.249 kb on - strand at 615.249 kb on - strand at 615.249 kb on - strand at 615.318 kb on + strand at 615.318 kb on + strand at 615.401 kb on + strand, within HMPREF1058_RS10620 at 615.442 kb on - strand, within HMPREF1058_RS10620 at 615.576 kb on - strand, within HMPREF1058_RS10620 at 615.583 kb on - strand, within HMPREF1058_RS10620 at 615.591 kb on - strand, within HMPREF1058_RS10620 at 615.592 kb on + strand, within HMPREF1058_RS10620 at 615.592 kb on + strand, within HMPREF1058_RS10620 at 615.593 kb on - strand, within HMPREF1058_RS10620 at 615.593 kb on - strand, within HMPREF1058_RS10620 at 615.598 kb on - strand, within HMPREF1058_RS10620 at 615.737 kb on + strand, within HMPREF1058_RS10620 at 615.737 kb on + strand, within HMPREF1058_RS10620 at 615.737 kb on + strand, within HMPREF1058_RS10620 at 615.738 kb on - strand, within HMPREF1058_RS10620 at 615.741 kb on - strand, within HMPREF1058_RS10620 at 616.056 kb on - strand, within HMPREF1058_RS10620 at 616.065 kb on + strand, within HMPREF1058_RS10620 at 616.065 kb on + strand, within HMPREF1058_RS10620 at 616.065 kb on + strand, within HMPREF1058_RS10620 at 616.237 kb on + strand, within HMPREF1058_RS10620 at 616.237 kb on + strand, within HMPREF1058_RS10620
Per-strain Table
Position Strand Gene LocusTag Fraction (+)-Arabinogalactan 5 mg/ml (C) remove 613,333 + -0.4 613,347 + -0.1 613,441 - HMPREF1058_RS10630 0.13 -1.0 613,441 - HMPREF1058_RS10630 0.13 +0.3 613,523 - HMPREF1058_RS10630 0.23 +1.0 613,539 + HMPREF1058_RS10630 0.25 +0.5 613,540 - HMPREF1058_RS10630 0.25 +4.9 613,545 + HMPREF1058_RS10630 0.25 +5.8 613,587 + HMPREF1058_RS10630 0.30 -1.5 613,672 - HMPREF1058_RS10630 0.40 +5.6 613,692 + HMPREF1058_RS10630 0.43 -0.6 613,714 - HMPREF1058_RS10630 0.45 -0.3 613,716 + HMPREF1058_RS10630 0.45 +0.8 613,716 + HMPREF1058_RS10630 0.45 -0.6 613,716 + HMPREF1058_RS10630 0.45 +0.0 613,745 - HMPREF1058_RS10630 0.49 -0.3 613,803 + HMPREF1058_RS10630 0.56 -0.2 614,035 - HMPREF1058_RS10630 0.83 -2.6 614,035 - HMPREF1058_RS10630 0.83 -0.4 614,038 - HMPREF1058_RS10630 0.83 +1.2 614,059 + HMPREF1058_RS10630 0.86 -0.0 614,062 - HMPREF1058_RS10630 0.86 +0.2 614,067 - HMPREF1058_RS10630 0.87 +0.1 614,067 - HMPREF1058_RS10630 0.87 +0.4 614,067 - HMPREF1058_RS10630 0.87 -1.4 614,074 - HMPREF1058_RS10630 0.87 +1.3 614,115 + +1.7 614,115 + +0.1 614,118 - -0.3 614,124 + +1.1 614,138 - -0.6 614,150 - +0.3 614,152 - +2.3 614,244 + -1.2 614,276 - -0.5 614,279 - -0.6 614,336 + -0.8 614,353 + -1.3 614,353 + +1.7 614,354 - +1.4 614,354 - -0.1 614,417 - HMPREF1058_RS10625 0.13 -2.0 614,640 - HMPREF1058_RS10625 0.36 -0.9 614,643 + HMPREF1058_RS10625 0.36 +1.0 614,756 + HMPREF1058_RS10625 0.48 -1.0 614,772 + HMPREF1058_RS10625 0.50 -0.1 614,797 - HMPREF1058_RS10625 0.53 +0.2 614,835 + HMPREF1058_RS10625 0.57 +4.4 614,836 - HMPREF1058_RS10625 0.57 +0.1 614,868 + HMPREF1058_RS10625 0.60 +0.2 614,872 + HMPREF1058_RS10625 0.60 -0.2 614,881 + HMPREF1058_RS10625 0.61 +4.0 614,883 - HMPREF1058_RS10625 0.62 -0.8 614,884 + HMPREF1058_RS10625 0.62 +0.3 614,885 - HMPREF1058_RS10625 0.62 -0.6 614,885 - HMPREF1058_RS10625 0.62 -1.9 614,892 + HMPREF1058_RS10625 0.63 -0.6 614,911 - HMPREF1058_RS10625 0.65 +0.0 614,927 + HMPREF1058_RS10625 0.66 -0.7 614,996 + HMPREF1058_RS10625 0.73 -0.2 615,052 - HMPREF1058_RS10625 0.79 +0.8 615,160 + -0.5 615,235 + +0.1 615,236 - -0.1 615,236 - -0.9 615,236 - -0.3 615,236 - -0.7 615,249 - -0.8 615,249 - -0.3 615,249 - +0.3 615,249 - -0.7 615,249 - +1.6 615,318 + +1.7 615,318 + -0.3 615,401 + HMPREF1058_RS10620 0.13 +0.9 615,442 - HMPREF1058_RS10620 0.16 -0.1 615,576 - HMPREF1058_RS10620 0.27 -1.4 615,583 - HMPREF1058_RS10620 0.28 +1.6 615,591 - HMPREF1058_RS10620 0.28 +0.8 615,592 + HMPREF1058_RS10620 0.29 +1.0 615,592 + HMPREF1058_RS10620 0.29 -1.1 615,593 - HMPREF1058_RS10620 0.29 +0.9 615,593 - HMPREF1058_RS10620 0.29 -0.8 615,598 - HMPREF1058_RS10620 0.29 +1.8 615,737 + HMPREF1058_RS10620 0.41 -0.9 615,737 + HMPREF1058_RS10620 0.41 -0.1 615,737 + HMPREF1058_RS10620 0.41 +0.4 615,738 - HMPREF1058_RS10620 0.41 -0.3 615,741 - HMPREF1058_RS10620 0.41 +1.0 616,056 - HMPREF1058_RS10620 0.68 +0.1 616,065 + HMPREF1058_RS10620 0.68 +1.6 616,065 + HMPREF1058_RS10620 0.68 -0.2 616,065 + HMPREF1058_RS10620 0.68 -0.9 616,237 + HMPREF1058_RS10620 0.83 +0.8 616,237 + HMPREF1058_RS10620 0.83 +0.5
Or see this region's nucleotide sequence