Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08160

Experiment: (+)-Arabinogalactan 5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS08165 and HMPREF1058_RS08160 are separated by 113 nucleotidesHMPREF1058_RS08160 and HMPREF1058_RS08155 are separated by 27 nucleotides HMPREF1058_RS08165: HMPREF1058_RS08165 - RagB/SusD family nutrient uptake outer membrane protein, at 29,865 to 31,805 _RS08165 HMPREF1058_RS08160: HMPREF1058_RS08160 - alpha-L-arabinofuranosidase, at 31,919 to 34,402 _RS08160 HMPREF1058_RS08155: HMPREF1058_RS08155 - glycosyl hydrolase family 30, at 34,430 to 35,857 _RS08155 Position (kb) 31 32 33 34 35Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 30.934 kb on + strand, within HMPREF1058_RS08165at 30.945 kb on + strand, within HMPREF1058_RS08165at 30.960 kb on - strand, within HMPREF1058_RS08165at 30.969 kb on - strand, within HMPREF1058_RS08165at 30.969 kb on - strand, within HMPREF1058_RS08165at 30.983 kb on + strand, within HMPREF1058_RS08165at 30.987 kb on + strand, within HMPREF1058_RS08165at 30.987 kb on + strand, within HMPREF1058_RS08165at 30.987 kb on + strand, within HMPREF1058_RS08165at 30.989 kb on + strand, within HMPREF1058_RS08165at 31.042 kb on - strand, within HMPREF1058_RS08165at 31.070 kb on + strand, within HMPREF1058_RS08165at 31.086 kb on - strand, within HMPREF1058_RS08165at 31.095 kb on + strand, within HMPREF1058_RS08165at 31.096 kb on - strand, within HMPREF1058_RS08165at 31.096 kb on - strand, within HMPREF1058_RS08165at 31.096 kb on - strand, within HMPREF1058_RS08165at 31.096 kb on - strand, within HMPREF1058_RS08165at 31.206 kb on + strand, within HMPREF1058_RS08165at 31.209 kb on - strand, within HMPREF1058_RS08165at 31.209 kb on - strand, within HMPREF1058_RS08165at 31.230 kb on - strand, within HMPREF1058_RS08165at 31.259 kb on - strand, within HMPREF1058_RS08165at 31.280 kb on + strand, within HMPREF1058_RS08165at 31.281 kb on - strand, within HMPREF1058_RS08165at 31.321 kb on + strand, within HMPREF1058_RS08165at 31.373 kb on + strand, within HMPREF1058_RS08165at 31.401 kb on - strand, within HMPREF1058_RS08165at 31.401 kb on - strand, within HMPREF1058_RS08165at 31.478 kb on - strand, within HMPREF1058_RS08165at 31.478 kb on - strand, within HMPREF1058_RS08165at 31.656 kb on + strandat 31.697 kb on + strandat 31.719 kb on - strandat 31.730 kb on + strandat 31.730 kb on + strandat 31.737 kb on + strandat 31.771 kb on + strandat 31.862 kb on - strandat 31.862 kb on - strandat 31.894 kb on + strandat 31.899 kb on - strandat 31.925 kb on - strandat 31.948 kb on + strandat 31.948 kb on + strandat 31.966 kb on - strandat 31.966 kb on - strandat 32.037 kb on + strandat 32.038 kb on - strandat 32.097 kb on + strandat 32.214 kb on + strand, within HMPREF1058_RS08160at 32.253 kb on + strand, within HMPREF1058_RS08160at 32.253 kb on + strand, within HMPREF1058_RS08160at 32.254 kb on - strand, within HMPREF1058_RS08160at 32.305 kb on + strand, within HMPREF1058_RS08160at 32.450 kb on - strand, within HMPREF1058_RS08160at 32.450 kb on - strand, within HMPREF1058_RS08160at 32.470 kb on + strand, within HMPREF1058_RS08160at 32.470 kb on + strand, within HMPREF1058_RS08160at 32.471 kb on - strand, within HMPREF1058_RS08160at 32.573 kb on - strand, within HMPREF1058_RS08160at 32.573 kb on - strand, within HMPREF1058_RS08160at 32.652 kb on - strand, within HMPREF1058_RS08160at 32.783 kb on - strand, within HMPREF1058_RS08160at 32.847 kb on - strand, within HMPREF1058_RS08160at 32.848 kb on + strand, within HMPREF1058_RS08160at 32.849 kb on - strand, within HMPREF1058_RS08160at 32.849 kb on - strand, within HMPREF1058_RS08160at 32.915 kb on - strand, within HMPREF1058_RS08160at 32.946 kb on + strand, within HMPREF1058_RS08160at 32.998 kb on - strand, within HMPREF1058_RS08160at 33.003 kb on - strand, within HMPREF1058_RS08160at 33.019 kb on + strand, within HMPREF1058_RS08160at 33.019 kb on + strand, within HMPREF1058_RS08160at 33.020 kb on - strand, within HMPREF1058_RS08160at 33.113 kb on + strand, within HMPREF1058_RS08160at 33.114 kb on - strand, within HMPREF1058_RS08160at 33.114 kb on - strand, within HMPREF1058_RS08160at 33.173 kb on + strand, within HMPREF1058_RS08160at 33.174 kb on - strand, within HMPREF1058_RS08160at 33.328 kb on + strand, within HMPREF1058_RS08160at 33.332 kb on + strand, within HMPREF1058_RS08160at 33.332 kb on + strand, within HMPREF1058_RS08160at 33.333 kb on - strand, within HMPREF1058_RS08160at 33.333 kb on - strand, within HMPREF1058_RS08160at 33.349 kb on - strand, within HMPREF1058_RS08160at 33.369 kb on - strand, within HMPREF1058_RS08160at 33.377 kb on - strand, within HMPREF1058_RS08160at 33.400 kb on + strand, within HMPREF1058_RS08160at 33.505 kb on + strand, within HMPREF1058_RS08160at 33.506 kb on - strand, within HMPREF1058_RS08160at 33.560 kb on - strand, within HMPREF1058_RS08160at 33.569 kb on + strand, within HMPREF1058_RS08160at 33.569 kb on + strand, within HMPREF1058_RS08160at 33.570 kb on - strand, within HMPREF1058_RS08160at 33.696 kb on + strand, within HMPREF1058_RS08160at 33.711 kb on + strand, within HMPREF1058_RS08160at 33.808 kb on + strand, within HMPREF1058_RS08160at 33.821 kb on - strand, within HMPREF1058_RS08160at 33.895 kb on + strand, within HMPREF1058_RS08160at 33.900 kb on - strand, within HMPREF1058_RS08160at 33.902 kb on - strand, within HMPREF1058_RS08160at 33.905 kb on - strand, within HMPREF1058_RS08160at 33.906 kb on + strand, within HMPREF1058_RS08160at 33.907 kb on - strand, within HMPREF1058_RS08160at 33.907 kb on - strand, within HMPREF1058_RS08160at 33.907 kb on - strand, within HMPREF1058_RS08160at 33.911 kb on - strand, within HMPREF1058_RS08160at 34.036 kb on - strand, within HMPREF1058_RS08160at 34.184 kb on + strandat 34.319 kb on + strandat 34.319 kb on + strandat 34.319 kb on + strandat 34.320 kb on - strandat 34.441 kb on + strandat 34.453 kb on - strandat 34.502 kb on + strandat 34.579 kb on - strand, within HMPREF1058_RS08155at 34.603 kb on - strand, within HMPREF1058_RS08155at 34.738 kb on + strand, within HMPREF1058_RS08155at 34.784 kb on - strand, within HMPREF1058_RS08155at 34.803 kb on - strand, within HMPREF1058_RS08155at 34.804 kb on + strand, within HMPREF1058_RS08155at 34.804 kb on + strand, within HMPREF1058_RS08155at 34.804 kb on + strand, within HMPREF1058_RS08155at 34.804 kb on + strand, within HMPREF1058_RS08155at 34.804 kb on + strand, within HMPREF1058_RS08155at 34.805 kb on - strand, within HMPREF1058_RS08155at 34.805 kb on - strand, within HMPREF1058_RS08155at 34.805 kb on - strand, within HMPREF1058_RS08155at 34.805 kb on - strand, within HMPREF1058_RS08155at 34.854 kb on - strand, within HMPREF1058_RS08155at 35.096 kb on + strand, within HMPREF1058_RS08155at 35.146 kb on - strand, within HMPREF1058_RS08155at 35.231 kb on - strand, within HMPREF1058_RS08155at 35.292 kb on - strand, within HMPREF1058_RS08155at 35.323 kb on - strand, within HMPREF1058_RS08155at 35.331 kb on - strand, within HMPREF1058_RS08155

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Per-strain Table

Position Strand Gene LocusTag Fraction (+)-Arabinogalactan 5 mg/ml (C)
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30,934 + HMPREF1058_RS08165 0.55 -1.3
30,945 + HMPREF1058_RS08165 0.56 +0.9
30,960 - HMPREF1058_RS08165 0.56 -1.2
30,969 - HMPREF1058_RS08165 0.57 -0.5
30,969 - HMPREF1058_RS08165 0.57 -0.5
30,983 + HMPREF1058_RS08165 0.58 +0.2
30,987 + HMPREF1058_RS08165 0.58 -0.1
30,987 + HMPREF1058_RS08165 0.58 -0.7
30,987 + HMPREF1058_RS08165 0.58 -0.5
30,989 + HMPREF1058_RS08165 0.58 -0.1
31,042 - HMPREF1058_RS08165 0.61 -0.2
31,070 + HMPREF1058_RS08165 0.62 -2.1
31,086 - HMPREF1058_RS08165 0.63 +2.0
31,095 + HMPREF1058_RS08165 0.63 -0.8
31,096 - HMPREF1058_RS08165 0.63 -1.2
31,096 - HMPREF1058_RS08165 0.63 -0.5
31,096 - HMPREF1058_RS08165 0.63 -1.6
31,096 - HMPREF1058_RS08165 0.63 +1.2
31,206 + HMPREF1058_RS08165 0.69 +0.6
31,209 - HMPREF1058_RS08165 0.69 -1.4
31,209 - HMPREF1058_RS08165 0.69 +0.1
31,230 - HMPREF1058_RS08165 0.70 -1.1
31,259 - HMPREF1058_RS08165 0.72 -1.3
31,280 + HMPREF1058_RS08165 0.73 -1.8
31,281 - HMPREF1058_RS08165 0.73 -0.3
31,321 + HMPREF1058_RS08165 0.75 +0.8
31,373 + HMPREF1058_RS08165 0.78 -1.1
31,401 - HMPREF1058_RS08165 0.79 +0.9
31,401 - HMPREF1058_RS08165 0.79 -1.7
31,478 - HMPREF1058_RS08165 0.83 +1.5
31,478 - HMPREF1058_RS08165 0.83 -0.0
31,656 + +4.3
31,697 + -0.9
31,719 - -0.1
31,730 + -0.7
31,730 + +0.3
31,737 + -1.3
31,771 + -0.4
31,862 - +0.6
31,862 - -0.3
31,894 + +0.6
31,899 - +1.2
31,925 - +0.5
31,948 + +3.9
31,948 + -0.2
31,966 - -0.7
31,966 - +1.7
32,037 + -0.7
32,038 - +0.7
32,097 + +0.7
32,214 + HMPREF1058_RS08160 0.12 -0.7
32,253 + HMPREF1058_RS08160 0.13 -1.1
32,253 + HMPREF1058_RS08160 0.13 +0.0
32,254 - HMPREF1058_RS08160 0.13 -0.3
32,305 + HMPREF1058_RS08160 0.16 +0.6
32,450 - HMPREF1058_RS08160 0.21 -1.3
32,450 - HMPREF1058_RS08160 0.21 +0.2
32,470 + HMPREF1058_RS08160 0.22 +2.1
32,470 + HMPREF1058_RS08160 0.22 +0.3
32,471 - HMPREF1058_RS08160 0.22 +0.1
32,573 - HMPREF1058_RS08160 0.26 -0.6
32,573 - HMPREF1058_RS08160 0.26 +0.1
32,652 - HMPREF1058_RS08160 0.30 +2.8
32,783 - HMPREF1058_RS08160 0.35 -2.3
32,847 - HMPREF1058_RS08160 0.37 -1.2
32,848 + HMPREF1058_RS08160 0.37 +0.8
32,849 - HMPREF1058_RS08160 0.37 -0.5
32,849 - HMPREF1058_RS08160 0.37 +0.8
32,915 - HMPREF1058_RS08160 0.40 +1.3
32,946 + HMPREF1058_RS08160 0.41 -0.5
32,998 - HMPREF1058_RS08160 0.43 -0.5
33,003 - HMPREF1058_RS08160 0.44 -0.9
33,019 + HMPREF1058_RS08160 0.44 -0.6
33,019 + HMPREF1058_RS08160 0.44 +0.4
33,020 - HMPREF1058_RS08160 0.44 -0.1
33,113 + HMPREF1058_RS08160 0.48 -0.5
33,114 - HMPREF1058_RS08160 0.48 -1.0
33,114 - HMPREF1058_RS08160 0.48 -1.9
33,173 + HMPREF1058_RS08160 0.50 +0.3
33,174 - HMPREF1058_RS08160 0.51 -0.3
33,328 + HMPREF1058_RS08160 0.57 -1.1
33,332 + HMPREF1058_RS08160 0.57 +1.9
33,332 + HMPREF1058_RS08160 0.57 -0.7
33,333 - HMPREF1058_RS08160 0.57 -1.4
33,333 - HMPREF1058_RS08160 0.57 -0.3
33,349 - HMPREF1058_RS08160 0.58 -1.7
33,369 - HMPREF1058_RS08160 0.58 -0.1
33,377 - HMPREF1058_RS08160 0.59 -1.1
33,400 + HMPREF1058_RS08160 0.60 -1.7
33,505 + HMPREF1058_RS08160 0.64 -0.8
33,506 - HMPREF1058_RS08160 0.64 -0.5
33,560 - HMPREF1058_RS08160 0.66 +1.7
33,569 + HMPREF1058_RS08160 0.66 -1.7
33,569 + HMPREF1058_RS08160 0.66 -1.1
33,570 - HMPREF1058_RS08160 0.66 -0.1
33,696 + HMPREF1058_RS08160 0.72 -1.0
33,711 + HMPREF1058_RS08160 0.72 -1.1
33,808 + HMPREF1058_RS08160 0.76 +0.1
33,821 - HMPREF1058_RS08160 0.77 -0.1
33,895 + HMPREF1058_RS08160 0.80 -1.2
33,900 - HMPREF1058_RS08160 0.80 -0.5
33,902 - HMPREF1058_RS08160 0.80 -0.4
33,905 - HMPREF1058_RS08160 0.80 +1.2
33,906 + HMPREF1058_RS08160 0.80 +0.1
33,907 - HMPREF1058_RS08160 0.80 +0.8
33,907 - HMPREF1058_RS08160 0.80 -1.0
33,907 - HMPREF1058_RS08160 0.80 -1.7
33,911 - HMPREF1058_RS08160 0.80 -0.7
34,036 - HMPREF1058_RS08160 0.85 +0.3
34,184 + -0.5
34,319 + -1.9
34,319 + -1.1
34,319 + -0.5
34,320 - -0.0
34,441 + -1.6
34,453 - -0.6
34,502 + -1.6
34,579 - HMPREF1058_RS08155 0.10 -0.4
34,603 - HMPREF1058_RS08155 0.12 +1.2
34,738 + HMPREF1058_RS08155 0.22 -0.7
34,784 - HMPREF1058_RS08155 0.25 -1.1
34,803 - HMPREF1058_RS08155 0.26 -1.2
34,804 + HMPREF1058_RS08155 0.26 +2.0
34,804 + HMPREF1058_RS08155 0.26 -1.2
34,804 + HMPREF1058_RS08155 0.26 -1.3
34,804 + HMPREF1058_RS08155 0.26 -0.2
34,804 + HMPREF1058_RS08155 0.26 -1.0
34,805 - HMPREF1058_RS08155 0.26 -1.4
34,805 - HMPREF1058_RS08155 0.26 -1.8
34,805 - HMPREF1058_RS08155 0.26 -1.2
34,805 - HMPREF1058_RS08155 0.26 +1.5
34,854 - HMPREF1058_RS08155 0.30 +1.1
35,096 + HMPREF1058_RS08155 0.47 -0.7
35,146 - HMPREF1058_RS08155 0.50 +0.4
35,231 - HMPREF1058_RS08155 0.56 -0.2
35,292 - HMPREF1058_RS08155 0.60 +1.6
35,323 - HMPREF1058_RS08155 0.63 +0.9
35,331 - HMPREF1058_RS08155 0.63 +0.7

Or see this region's nucleotide sequence