Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS07405

Experiment: (+)-Arabinogalactan 5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS07415 and HMPREF1058_RS07410 are separated by 1 nucleotidesHMPREF1058_RS07410 and HMPREF1058_RS07405 overlap by 4 nucleotidesHMPREF1058_RS07405 and HMPREF1058_RS07400 are separated by 26 nucleotides HMPREF1058_RS07415: HMPREF1058_RS07415 - family 20 glycosylhydrolase, at 232,765 to 234,771 _RS07415 HMPREF1058_RS07410: HMPREF1058_RS07410 - sialate O-acetylesterase, at 234,773 to 235,438 _RS07410 HMPREF1058_RS07405: HMPREF1058_RS07405 - sialate O-acetylesterase, at 235,435 to 237,498 _RS07405 HMPREF1058_RS07400: HMPREF1058_RS07400 - glycoside hydrolase family 2 protein, at 237,525 to 240,092 _RS07400 Position (kb) 235 236 237 238Strain fitness (log2 ratio) -2 -1 0 1 2 3at 234.466 kb on - strand, within HMPREF1058_RS07415at 234.476 kb on - strand, within HMPREF1058_RS07415at 234.477 kb on + strand, within HMPREF1058_RS07415at 234.489 kb on + strand, within HMPREF1058_RS07415at 234.615 kb on + strandat 234.697 kb on - strandat 234.748 kb on + strandat 234.782 kb on - strandat 234.789 kb on + strandat 234.790 kb on - strandat 234.843 kb on - strand, within HMPREF1058_RS07410at 234.848 kb on - strand, within HMPREF1058_RS07410at 235.011 kb on + strand, within HMPREF1058_RS07410at 235.013 kb on + strand, within HMPREF1058_RS07410at 235.126 kb on + strand, within HMPREF1058_RS07410at 235.226 kb on - strand, within HMPREF1058_RS07410at 235.226 kb on - strand, within HMPREF1058_RS07410at 235.355 kb on + strand, within HMPREF1058_RS07410at 235.356 kb on - strand, within HMPREF1058_RS07410at 235.356 kb on - strand, within HMPREF1058_RS07410at 235.524 kb on + strandat 235.531 kb on - strandat 235.541 kb on + strandat 235.542 kb on - strandat 235.542 kb on - strandat 235.542 kb on - strandat 235.542 kb on - strandat 235.639 kb on - strandat 235.668 kb on + strand, within HMPREF1058_RS07405at 235.715 kb on + strand, within HMPREF1058_RS07405at 235.932 kb on - strand, within HMPREF1058_RS07405at 235.949 kb on - strand, within HMPREF1058_RS07405at 235.986 kb on - strand, within HMPREF1058_RS07405at 235.986 kb on - strand, within HMPREF1058_RS07405at 235.986 kb on - strand, within HMPREF1058_RS07405at 236.063 kb on - strand, within HMPREF1058_RS07405at 236.183 kb on + strand, within HMPREF1058_RS07405at 236.281 kb on - strand, within HMPREF1058_RS07405at 236.428 kb on - strand, within HMPREF1058_RS07405at 236.443 kb on + strand, within HMPREF1058_RS07405at 236.522 kb on - strand, within HMPREF1058_RS07405at 236.525 kb on - strand, within HMPREF1058_RS07405at 236.527 kb on - strand, within HMPREF1058_RS07405at 236.527 kb on - strand, within HMPREF1058_RS07405at 236.613 kb on + strand, within HMPREF1058_RS07405at 236.678 kb on + strand, within HMPREF1058_RS07405at 236.718 kb on - strand, within HMPREF1058_RS07405at 236.743 kb on - strand, within HMPREF1058_RS07405at 236.780 kb on + strand, within HMPREF1058_RS07405at 236.780 kb on + strand, within HMPREF1058_RS07405at 236.781 kb on - strand, within HMPREF1058_RS07405at 236.828 kb on - strand, within HMPREF1058_RS07405at 236.880 kb on + strand, within HMPREF1058_RS07405at 236.902 kb on - strand, within HMPREF1058_RS07405at 237.014 kb on + strand, within HMPREF1058_RS07405at 237.015 kb on - strand, within HMPREF1058_RS07405at 237.233 kb on + strand, within HMPREF1058_RS07405at 237.254 kb on - strand, within HMPREF1058_RS07405at 237.256 kb on - strand, within HMPREF1058_RS07405at 237.310 kb on - strandat 237.312 kb on - strandat 237.339 kb on - strandat 237.384 kb on - strandat 237.508 kb on + strandat 237.512 kb on - strandat 237.517 kb on + strandat 237.521 kb on + strandat 237.522 kb on - strandat 237.591 kb on + strandat 237.710 kb on + strandat 237.730 kb on - strandat 237.782 kb on + strand, within HMPREF1058_RS07400at 237.783 kb on - strand, within HMPREF1058_RS07400at 237.794 kb on + strand, within HMPREF1058_RS07400at 237.859 kb on - strand, within HMPREF1058_RS07400at 238.000 kb on + strand, within HMPREF1058_RS07400at 238.067 kb on + strand, within HMPREF1058_RS07400at 238.067 kb on + strand, within HMPREF1058_RS07400at 238.068 kb on - strand, within HMPREF1058_RS07400at 238.071 kb on + strand, within HMPREF1058_RS07400at 238.188 kb on + strand, within HMPREF1058_RS07400at 238.189 kb on - strandat 238.189 kb on - strand, within HMPREF1058_RS07400at 238.192 kb on + strand, within HMPREF1058_RS07400at 238.294 kb on - strand, within HMPREF1058_RS07400at 238.302 kb on - strand, within HMPREF1058_RS07400at 238.302 kb on - strand, within HMPREF1058_RS07400at 238.381 kb on + strand, within HMPREF1058_RS07400at 238.407 kb on - strand, within HMPREF1058_RS07400at 238.407 kb on - strand, within HMPREF1058_RS07400at 238.472 kb on - strand, within HMPREF1058_RS07400

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Per-strain Table

Position Strand Gene LocusTag Fraction (+)-Arabinogalactan 5 mg/ml (C)
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234,466 - HMPREF1058_RS07415 0.85 -0.5
234,476 - HMPREF1058_RS07415 0.85 -0.6
234,477 + HMPREF1058_RS07415 0.85 -1.2
234,489 + HMPREF1058_RS07415 0.86 -1.3
234,615 + +0.1
234,697 - -1.5
234,748 + -0.4
234,782 - -1.4
234,789 + +2.1
234,790 - +0.7
234,843 - HMPREF1058_RS07410 0.11 +2.0
234,848 - HMPREF1058_RS07410 0.11 +0.5
235,011 + HMPREF1058_RS07410 0.36 +1.4
235,013 + HMPREF1058_RS07410 0.36 -1.0
235,126 + HMPREF1058_RS07410 0.53 +0.3
235,226 - HMPREF1058_RS07410 0.68 -1.1
235,226 - HMPREF1058_RS07410 0.68 -0.2
235,355 + HMPREF1058_RS07410 0.87 -0.1
235,356 - HMPREF1058_RS07410 0.88 +3.5
235,356 - HMPREF1058_RS07410 0.88 +1.5
235,524 + -0.5
235,531 - -1.9
235,541 + +1.1
235,542 - +1.5
235,542 - +0.4
235,542 - +0.4
235,542 - -1.2
235,639 - -1.4
235,668 + HMPREF1058_RS07405 0.11 +0.9
235,715 + HMPREF1058_RS07405 0.14 -0.1
235,932 - HMPREF1058_RS07405 0.24 +1.3
235,949 - HMPREF1058_RS07405 0.25 -0.4
235,986 - HMPREF1058_RS07405 0.27 -0.3
235,986 - HMPREF1058_RS07405 0.27 -0.4
235,986 - HMPREF1058_RS07405 0.27 +2.2
236,063 - HMPREF1058_RS07405 0.30 -0.3
236,183 + HMPREF1058_RS07405 0.36 -0.6
236,281 - HMPREF1058_RS07405 0.41 -0.5
236,428 - HMPREF1058_RS07405 0.48 -1.4
236,443 + HMPREF1058_RS07405 0.49 -1.0
236,522 - HMPREF1058_RS07405 0.53 +0.6
236,525 - HMPREF1058_RS07405 0.53 -1.6
236,527 - HMPREF1058_RS07405 0.53 -1.3
236,527 - HMPREF1058_RS07405 0.53 -0.5
236,613 + HMPREF1058_RS07405 0.57 -0.1
236,678 + HMPREF1058_RS07405 0.60 -0.5
236,718 - HMPREF1058_RS07405 0.62 -0.1
236,743 - HMPREF1058_RS07405 0.63 -0.7
236,780 + HMPREF1058_RS07405 0.65 -0.6
236,780 + HMPREF1058_RS07405 0.65 -0.1
236,781 - HMPREF1058_RS07405 0.65 -1.8
236,828 - HMPREF1058_RS07405 0.67 -1.9
236,880 + HMPREF1058_RS07405 0.70 -0.8
236,902 - HMPREF1058_RS07405 0.71 -1.0
237,014 + HMPREF1058_RS07405 0.77 -2.6
237,015 - HMPREF1058_RS07405 0.77 -2.7
237,233 + HMPREF1058_RS07405 0.87 +0.8
237,254 - HMPREF1058_RS07405 0.88 +0.5
237,256 - HMPREF1058_RS07405 0.88 -1.3
237,310 - +0.1
237,312 - -0.9
237,339 - -0.2
237,384 - +0.1
237,508 + -0.9
237,512 - -1.6
237,517 + -0.8
237,521 + -0.7
237,522 - -2.0
237,591 + +0.1
237,710 + +0.7
237,730 - +0.7
237,782 + HMPREF1058_RS07400 0.10 +2.0
237,783 - HMPREF1058_RS07400 0.10 -0.3
237,794 + HMPREF1058_RS07400 0.10 -0.6
237,859 - HMPREF1058_RS07400 0.13 +0.5
238,000 + HMPREF1058_RS07400 0.18 -0.1
238,067 + HMPREF1058_RS07400 0.21 +0.1
238,067 + HMPREF1058_RS07400 0.21 -0.6
238,068 - HMPREF1058_RS07400 0.21 -2.1
238,071 + HMPREF1058_RS07400 0.21 +0.9
238,188 + HMPREF1058_RS07400 0.26 -1.8
238,189 - +1.1
238,189 - HMPREF1058_RS07400 0.26 -0.5
238,192 + HMPREF1058_RS07400 0.26 -1.7
238,294 - HMPREF1058_RS07400 0.30 -0.1
238,302 - HMPREF1058_RS07400 0.30 +0.5
238,302 - HMPREF1058_RS07400 0.30 -0.7
238,381 + HMPREF1058_RS07400 0.33 -1.5
238,407 - HMPREF1058_RS07400 0.34 -2.2
238,407 - HMPREF1058_RS07400 0.34 -1.3
238,472 - HMPREF1058_RS07400 0.37 +2.7

Or see this region's nucleotide sequence