Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS05725

Experiment: (+)-Arabinogalactan 5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	(+)-Arabinogalactan 5 mg/ml (C)
91,909	-				-0.1
91,912	+		HMPREF1058_RS05730	0.39	-0.3
91,913	-		HMPREF1058_RS05730	0.39	-0.3
92,523	+				-0.6
92,597	+				-0.4
92,598	-				-0.9
92,598	-				+0.7
92,599	+				+0.2
92,600	-				+0.3
92,602	-				+0.3
92,604	-				-0.7
92,638	+				-0.7
92,638	+				-0.4
92,649	+				+0.1
92,649	+				+1.9
92,650	-				+0.1
92,650	-				+1.0
92,650	-				+0.0
92,664	+				+1.3
92,750	+				-1.6
92,774	+				+0.5
92,774	+				-0.7
92,775	-				+0.2
92,775	-				-0.3
92,798	+				-0.1
92,799	-				-1.3
92,838	-				+1.3
92,839	+				+1.9
92,840	-				-0.1
92,840	-				+2.4
92,946	-		HMPREF1058_RS05725	0.22	+0.1
92,947	+		HMPREF1058_RS05725	0.22	-1.5
93,007	-		HMPREF1058_RS05725	0.37	-0.4
93,008	+		HMPREF1058_RS05725	0.37	+0.6
93,883	+		HMPREF1058_RS05720	0.51	-1.6
93,909	-		HMPREF1058_RS05720	0.53	-1.4
93,909	-		HMPREF1058_RS05720	0.53	-1.5
93,909	-		HMPREF1058_RS05720	0.53	+4.1
93,909	-		HMPREF1058_RS05720	0.53	-2.3
93,980	+		HMPREF1058_RS05720	0.59	-0.8
94,075	+		HMPREF1058_RS05720	0.67	-0.2
94,084	+		HMPREF1058_RS05720	0.67	+4.8
94,085	-		HMPREF1058_RS05720	0.67	-0.1
94,117	+		HMPREF1058_RS05720	0.70	-2.4
94,212	-		HMPREF1058_RS05720	0.78	+1.6